cluster # 2505

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Oryza sativa
cluster # 2505 cluster # 2505 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2505#0 length = 327 sequences # 1

consensus_2505#1 length = 321 sequences # 1

consensusID : consensus_2505#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 327
fasta sequence

                              [ATTCGCCCTCCACGAGCACCACGAGAAGAAGGAAGCCAAGAAGCACCGCCGCCATGCCCACCACCACCACTAATCCATCCCATCCATTCGTGCATTGCTACCTTTAAGCATCTTGCATGTTGATGTCTCGTGTGTATATATTATTAGCCCATCGAGATATATACCTCTCCGTCGTCATCGTATGTGCTATATATGTGTATATACTTGTTATTTGTTCGTTAGTTTGTCATCGCTGAGTGCATAGCTCTCGTTCTTGTAGTATAGTTTGTATGTACAAAATAAATAAGAGAATACATATTATGTTCTCATTGTCAGGGTAAAAAAAAA]

[+] EMBL AU100845             [ATTCGCCCTCCACGAGCACCACGAGAAGAAGGAAGCCAAGAAGCACCGCCGCCATGCCCACCACCACCACTAATCCATCCCATCCATTCGTGCATTGCTACCTTTAAGCATCTTGCATGTTGATGTCTCGTGTGTATATATTATTAGCCCATCGAGATATATACCTCTCCGTCGTCATCGTATGTGCTATATATGTGTATATACTTGTTATTTGTTCGTTAGTTTGTCATCGCTGAGTGCATAGCTCTCGTTCTTGTAGTATAGTTTGTATGTACAAAATAAATAAGAGAATACATATTATGTTCTCATTGTCAGGGTAAAAAAAAA]




>consensus_2505#0
ATTCGCCCTCCACGAGCACCACGAGAAGAAGGAAGCCAAGAAGCACCGCCGCCATGCCCA
CCACCACCACTAATCCATCCCATCCATTCGTGCATTGCTACCTTTAAGCATCTTGCATGT
TGATGTCTCGTGTGTATATATTATTAGCCCATCGAGATATATACCTCTCCGTCGTCATCG
TATGTGCTATATATGTGTATATACTTGTTATTTGTTCGTTAGTTTGTCATCGCTGAGTGC
ATAGCTCTCGTTCTTGTAGTATAGTTTGTATGTACAAAATAAATAAGAGAATACATATTA
TGTTCTCATTGTCAGGGTAAAAAAAAA

consensusID : consensus_2505#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 321
fasta sequence

                              [TTCGCCCTCCACGAGCCCCACGAGAAGAAGGAAGCCAAGAAGCACCGCCGCCATGCCCACCACCCACCACTAATCCATCCCATCCATTCGTGCATTGCTACCTTTAAGCATCTTGCATGTTGATGTCTCGTGTGTATATATTATTAGCCCATCGAGATATATACCTCTCCGTCGTCATCGTATGTGCTATATATGTGTATATACTTGTTATTTGTTCGTTAGTTTGTCATCGCTGAGTGCATAGTTCTCGTTCTTGTAGTATAGTTTGTATGTACAAAATAAATAAGAGANATACATATTATGTTTTAAAAAAAAAAAAAA]

[-] EMBL CF313838             [TTCGCCCTCCACGAGCCCCACGAGAAGAAGGAAGCCAAGAAGCACCGCCGCCATGCCCACCACCCACCACTAATCCATCCCATCCATTCGTGCATTGCTACCTTTAAGCATCTTGCATGTTGATGTCTCGTGTGTATATATTATTAGCCCATCGAGATATATACCTCTCCGTCGTCATCGTATGTGCTATATATGTGTATATACTTGTTATTTGTTCGTTAGTTTGTCATCGCTGAGTGCATAGTTCTCGTTCTTGTAGTATAGTTTGTATGTACAAAATAAATAAGAGANATACATATTATGTTTTAAAAAAAAAAAAAA]




>consensus_2505#1
TTCGCCCTCCACGAGCCCCACGAGAAGAAGGAAGCCAAGAAGCACCGCCGCCATGCCCAC
CACCCACCACTAATCCATCCCATCCATTCGTGCATTGCTACCTTTAAGCATCTTGCATGT
TGATGTCTCGTGTGTATATATTATTAGCCCATCGAGATATATACCTCTCCGTCGTCATCG
TATGTGCTATATATGTGTATATACTTGTTATTTGTTCGTTAGTTTGTCATCGCTGAGTGC
ATAGTTCTCGTTCTTGTAGTATAGTTTGTATGTACAAAATAAATAAGAGANATACATATT
ATGTTTTAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2505#0      ATTCGCCCTCCACGAGCACCACGAGAAGAAGGAAGCCAAGAAGCACCGCCGCCATGCCCA 60
consensus_2505#1      -TTCGCCCTCCACGAGCCCCACGAGAAGAAGGAAGCCAAGAAGCACCGCCGCCATGCCCA 59
                       **************** ******************************************

consensus_2505#0      CCACC-ACCACTAATCCATCCCATCCATTCGTGCATTGCTACCTTTAAGCATCTTGCATG 119
consensus_2505#1      CCACCCACCACTAATCCATCCCATCCATTCGTGCATTGCTACCTTTAAGCATCTTGCATG 119
                      ***** ******************************************************

consensus_2505#0      TTGATGTCTCGTGTGTATATATTATTAGCCCATCGAGATATATACCTCTCCGTCGTCATC 179
consensus_2505#1      TTGATGTCTCGTGTGTATATATTATTAGCCCATCGAGATATATACCTCTCCGTCGTCATC 179
                      ************************************************************

consensus_2505#0      GTATGTGCTATATATGTGTATATACTTGTTATTTGTTCGTTAGTTTGTCATCGCTGAGTG 239
consensus_2505#1      GTATGTGCTATATATGTGTATATACTTGTTATTTGTTCGTTAGTTTGTCATCGCTGAGTG 239
                      ************************************************************

consensus_2505#0      CATAGCTCTCGTTCTTGTAGTATAGTTTGTATGTACAAAATAAATAAGAGAA-TACATAT 298
consensus_2505#1      CATAGTTCTCGTTCTTGTAGTATAGTTTGTATGTACAAAATAAATAAGAGANATACATAT 299
                      ***** *********************************************  *******

consensus_2505#0      TATGTTCTCATTGTCAGGGTAAAAAAAAA 327
consensus_2505#1      TATGTTTT-------AAAAAAAAAAAAAA 321
                      ****** *       *    *********