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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2508#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 919 fasta sequence
[GCTAGACATGGCGATGGGGAAGAATGGGTTGCTGGGGTGGCTGTGCGTCGTCGTGCCGGGGCGGCGGCGGCGGCGGCGAGGGGCGCGGCTGGTGCTGTGGGGAGGGGAGAGGCGGGCGGCGGCGGCCGGGAGGATGGCCGGGGAGGTGATGATGGAGCACGCGGGGCGCCTCGTGGTGTGCCGCGCCGACGGGTTCTGCCTCGGCCGCGCGGCCCCCGTGCTCGCCATCGAGGACCGCCTCGACGCTTGCGCCACCTACCTCGTCCTCCCCGTCGACCGCCTCCCCCAGGGCCGCGACGTCGTCACCGCCGCCTCGCTCGCCGCGCTCACCTACGACAGGGCCGCCGGCGCCCCGCTGCTGGCCGGTGGCGCGAAGAGCCCGTTCGAGTACGTCAAGGACGACGGCGGACGGACGGTGATCAAGGTCACGGAGGAGTTCATCGTCAAGGCCGTCACGGGGAGGCGGCCACCGGCTGGCGGCGGCGGCGAGGGGGAGGACGCGCATGGGGCGGCGGCGCTGTGCAGCACGCCGGAGCTGAGGAAGCACTACGAGCAGCTGGTGGGCGCGGCGAGGGGGCGGCCGTGGTCGCCGCGGCTGGAGACGATCAAGGAGCGGAATGGGCGGCGGAGGGTGGTCGACGTCGTCGTCAGCCCCACCGGCAGGCTGTCTCCGGTGAGGTTGCTCGGGTTGGACAAGGGAATCAAGTAGACATGCATGAAAATTTTCGTCTAATCCTCTCTTCTAATTGGCTGCTGCTAGTTTTGCTTTGAAGATTGAAGCGATTTTTGGTTGGAAATTTGGATTAGATGTACATATGTTTTGGATGGGTATCTCTTGTTTGTTTCTACAAGAATTTTGTACATCCAGACCGATCTCTGTTTGTAAGTAAGGTAAATGATTTACCGTCAAATGGCAAAC]
[+] EMBL AK069789 [GCTAGACATGGCGATGGGGAAGAATGGGTTGCTGGGGTGGCTGTGCGTCGTCGTGCCGGGGCGGCGGCGGCGGCGGCGAGGGGCGCGGCTGGTGCTGTGGGGAGGGGAGAGGCGGGCGGCGGCGGCCGGGAGGATGGCCGGGGAGGTGATGATGGAGCACGCGGGGCGCCTCGTGGTGTGCCGCGCCGACGGGTTCTGCCTCGGCCGCGCGGCCCCCGTGCTCGCCATCGAGGACCGCCTCGACGCTTGCGCCACCTACCTCGTCCTCCCCGTCGACCGCCTCCCCCAGGGCCGCGACGTCGTCACCGCCGCCTCGCTCGCCGCGCTCACCTACGACAGGGCCGCCGGCGCCCCGCTGCTGGCCGGTGGCGCGAAGAGCCCGTTCGAGTACGTCAAGGACGACGGCGGACGGACGGTGATCAAGGTCACGGAGGAGTTCATCGTCAAGGCCGTCACGGGGAGGCGGCCACCGGCTGGCGGCGGCGGCGAGGGGGAGGACGCGCATGGGGCGGCGGCGCTGTGCAGCACGCCGGAGCTGAGGAAGCACTACGAGCAGCTGGTGGGCGCGGCGAGGGGGCGGCCGTGGTCGCCGCGGCTGGAGACGATCAAGGAGCGGAATGGGCGGCGGAGGGTGGTCGACGTCGTCGTCAGCCCCACCGGCAGGCTGTCTCCGGTGAGGTTGCTCGGGTTGGACAAGGGAATCAAGTAGACATGCATGAAAATTTTCGTCTAATCCTCTCTTCTAATTGGCTGCTGCTAGTTTTGCTTTGAAGATTGAAGCGATTTTTGGTTGGAAATTTGGATTAGATGTACATATGTTTTGGATGGGTATCTCTTGTTTGTTTCTACAAGAATTTTGTACATCCAGACCGATCTCTGTTTGTAAGTAAGGTAAATGATTTACCGTCAAATGGCAAAC]
consensusID : consensus_2508#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 852 fasta sequence
[CTAGAATATTCTAGATCGTGGTTAGTGCATCCATGGGCAACGGCATGTCTCCGTGCCTGTGCTCCCCGCCCGTGCACGGCGAGGAGGCGGCGGCGGAGGCGGCGGCGGCGAGGCTGGTGTTCTGGGGCGGGGCGGCGAGCCAGCTGGTGGCGTCCGCGGCGACGACGGCCGGCGACGTCATGGCGGAGCTCCCCGGCCACCTCGTCTGCGCCGGCGACTCGTTCTTCATCGGCCTCCCGATCCCGGCGCTGCCGGCCGGCGAGGAGCTGGCGGCGGGGCGGACGTACTTCGTGCTCCCCGCCGCGCGGTTCTCGTGCCAGCAGGCGCTCACCGCCGCGTCGCTCGCGTCGCTGTCGCCGTCCCCGGCCGCGAAGGTGTCCCTCGCCGGCGGCGCGTCGTCGCCGTTCGAGTACGTGACGGGCGACGACGGCATGGCGCTCATCAGGGTCCTCCCGGAGTTCATCGAGAGGGCGATCACCTGCGTGGCCCGCGTCGCGGGCGGCGGCAAGGCGGGCGGCGAGGCGGCGGCCGACGACCAGCTGTGCAGCACGCCGGAGCTGAGGAAGCACTACATGCAGCTGGTGGGCGCGCGGCAGCAGCGGCCGTGGTCGCCGGGGCTCGAGACGATATCGGAGGCCGAGAAGCGGCGGCGGCGGCGGTCGCCGGTGAGGCTGGTCGCGCTGGCGAAGGCGGCGTCAAGATAGCATTGGCGGCCGCGCCAAAAAAGAGTTCGGATTTGTGCATAGATACGGATGGAGACAAGTATACGGATTTGATTTAGTTCTAGCTCATTTTGAAGACAGTCAAATTAGATGAAAATTTGATGCAAAAATTGGCAAATTGAAGAATTAA]
[+] EMBL AK109014 [CTAGAATATTCTAGATCGTGGTTAGTGCATCCATGGGCAACGGCATGTCTCCGTGCCTGTGCTCCCCGCCCGTGCACGGCGAGGAGGCGGCGGCGGAGGCGGCGGCGGCGAGGCTGGTGTTCTGGGGCGGGGCGGCGAGCCAGCTGGTGGCGTCCGCGGCGACGACGGCCGGCGACGTCATGGCGGAGCTCCCCGGCCACCTCGTCTGCGCCGGCGACTCGTTCTTCATCGGCCTCCCGATCCCGGCGCTGCCGGCCGGCGAGGAGCTGGCGGCGGGGCGGACGTACTTCGTGCTCCCCGCCGCGCGGTTCTCGTGCCAGCAGGCGCTCACCGCCGCGTCGCTCGCGTCGCTGTCGCCGTCCCCGGCCGCGAAGGTGTCCCTCGCCGGCGGCGCGTCGTCGCCGTTCGAGTACGTGACGGGCGACGACGGCATGGCGCTCATCAGGGTCCTCCCGGAGTTCATCGAGAGGGCGATCACCTGCGTGGCCCGCGTCGCGGGCGGCGGCAAGGCGGGCGGCGAGGCGGCGGCCGACGACCAGCTGTGCAGCACGCCGGAGCTGAGGAAGCACTACATGCAGCTGGTGGGCGCGCGGCAGCAGCGGCCGTGGTCGCCGGGGCTCGAGACGATATCGGAGGCCGAGAAGCGGCGGCGGCGGCGGTCGCCGGTGAGGCTGGTCGCGCTGGCGAAGGCGGCGTCAAGATAGCATTGGCGGCCGCGCCAAAAAAGAGTTCGGATTTGTGCATAGATACGGATGGAGACAAGTATACGGATTTGATTTAGTTCTAGCTCATTTTGAAGACAGTCAAATTAGATGAAAATTTGATGCAAAAATTGGCAAATTGAAGAATTAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2508#0 -------------------GCTAGACATGGCGATGGGGAAGAATGGGTTGCTGGGGTGGC 41
consensus_2508#1 CTAGAATATTCTAGATCGTGGTTAGTGCATCCATGGGCAACGGCATGTCTCCGTGCCTGT 60
* * * ***** ** ** * * * *
consensus_2508#0 TGTGCGTCGTCGTGC----CGGGGCGGCGGCGGCGGCGGCGAGGG--GCGCGGCTGGTGC 95
consensus_2508#1 GCTCCCCGCCCGTGCACGGCGAGGAGGCGGCGGCGGAGGCGGCGGCGGCGAGGCTGGTGT 120
* * ***** ** ** *********** **** ** *** ********
consensus_2508#0 TGTGGGGAGGGGAGA------GGCGGGCGGCGGCGGCCGGGAGGATGGCCGGGGAGGTGA 149
consensus_2508#1 TCTGGGGCGGGGCGGCGAGCCAGCTGGTGGCGTCCGCGGCGACGACGGCCGGCGACGTCA 180
* ***** **** * ** ** **** * ** * ** ** ****** ** ** *
consensus_2508#0 TGATGGAGCACGCGGGGCGCCTCGTGGTGTGCCGCGCCGACGGGTTCTGCCTCGGCCGCG 209
consensus_2508#1 TGGCGGAGCTCCCCGGCCACCTCGTC---TGCGCCGGCGACTCGTTCTTCATCGGCCTCC 237
** ***** * * ** * ****** *** ** **** ***** * ****** *
consensus_2508#0 CGGCCCCCGTGCTCGCCATCGAGGACCGCCTCGACGCTTGCGCCACCTACCTCGTCCTCC 269
consensus_2508#1 CGATCCCGGCGCTGCCGGCCGGCGAGGAGCTGGCGGCGGGGCGGACGTACTTCGTGCTCC 297
** *** * *** * ** ** ** * ** * ** *** **** ****
consensus_2508#0 CCGTCGACCGCCTCCCCCAGGGCCGCGACGTCGTCACCGCCGCCTCGCTCGCCGCGCTCA 329
consensus_2508#1 CCGCCGCGCGGTTCTC---GTGCCAGCAGGCGCTCACCGCCGCGTCGCTCGCGTCGCTGT 354
*** ** ** ** * * *** * * ********** ******** ****
consensus_2508#0 CCTACGACAGGGCCGCCGGCGCCCCGCTGCTGGCCGGTGGCGCGAAGAGCCCGTTCGAGT 389
consensus_2508#1 CGCCGTCCCCGGCCGCGAAGGT---GTCCCTCGCCGGCGGCGCGTCGTCGCCGTTCGAGT 411
* * ****** * * ** ***** ****** * **********
consensus_2508#0 ACGTCAAGGACGACGGCGGACGGACGGTGATCAAGGTCACGGAGGAGTTCATCGTCAAGG 449
consensus_2508#1 ACGTGACGGGCGACGACGGCATGGCGCTCATCAGGGTCCTCCCGGAGTTCATCGAGAGGG 471
**** * ** ***** *** * ** * **** **** *********** * **
consensus_2508#0 CCGTCACGGGGAGGCGGCCACCGGCTGGCGGCGGCGGCGAGGGGGAGGACGCG-CATGGG 508
consensus_2508#1 CGATCACCTGC--GTGGCC-CGCGTCGCGGGCGGCGGCAAGGCGGGCGGCGAGGCGGCGG 528
* **** * * **** * * * ********* *** ** * ** * * **
consensus_2508#0 GCGGCGGC--GCTGTGCAGCACGCCGGAGCTGAGGAAGCACTACGAGCAGCTGGTGGGCG 566
consensus_2508#1 CCGACGACCAGCTGTGCAGCACGCCGGAGCTGAGGAAGCACTACATGCAGCTGGTGGGCG 588
** ** * ********************************** **************
consensus_2508#0 CGGCGAGGGGGCGGCCGTGGTCGCCGCGGCTGGAGACGATCAAGGAGCGGAATGGGCGGC 626
consensus_2508#1 CGCGGCAGCAGCGGCCGTGGTCGCCGGGGCTCGAGACGATATCGGAGGCCGAGAAGCGGC 648
** * * **************** **** ******** **** * *****
consensus_2508#0 GGAGG--GTGGTCGACGTCGTCGTCAGCCCCACCGGC--AGGCTGTCTCCGGTGAGGTTG 682
consensus_2508#1 GGCGGCGGCGGTCGCCGGTGAGGCTGGTCGCGCTGGCGAAGGCGGCGTCAAGATAGCATT 708
** ** * ***** ** * * * * * * *** **** * ** * ** *
consensus_2508#0 CTCGGGTTGGACAAGGGAATCAAGTAGACATGCATGAAAATTTTCGTCTAATCCTCTCTT 742
consensus_2508#1 GGCGG-CCGCGCCAAAAAAGAGTTCGGATTTGTGCATAGATACGGATGGAGACAAGTATA 767
*** * * * ** ** ** * ** * * * * *
consensus_2508#0 CTAATTGG--CTGCTGCTAGTTTTGCTTTGAAGATTGAAGCGATTTTTGGTTGGAAATTT 800
consensus_2508#1 CGGATTTGATTTAGTTCTAGCTC-ATTTTGAAGAC--AGTCAAAT--TAGATGAAAATTT 822
* *** * * * **** * ******** * * * * * * ** ******
consensus_2508#0 GGATTAGATGTACATATGTTTTGGATGGGTATCTCTTGTTTGTTTCTACAAGAATTTTGT 860
consensus_2508#1 GATGCAAAAATTGGCAAAT--TGAAGAATTAA---------------------------- 852
* * * * * * ** * **
consensus_2508#0 ACATCCAGACCGATCTCTGTTTGTAAGTAAGGTAAATGATTTACCGTCAAATGGCAAAC 919
consensus_2508#1 -----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||