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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2517#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1567 fasta sequence
[GATCCGATCCACTCCCCGCCGCCGGTAGCCGGGGCGGCGGCAGGGATGGCGTGTTCGCTGTTGCTGACCATCCTCCCCGAGGAGCTTGTGGTGGAGATCCTAATCCGCCTCACCGACCTCGCCGACCTCGCCCGCGCCGCCTCCGCCTGCAAGCCCCTCCGCCGCCTCATCACCTCCCGCGCCTTCCTCGCCCGCCTCCACGCGCTCCACGCCAAGCCCCTCCTCGGACTCCTCCTGCTGGAGAGAGACCGCTGCGGCTTCCTCCCCGCCGCTACCGCCGTCGCCGCCGCCGTCGCCCGCGCGTCCGACTTCGCCTTCTCCTTCCTCCCCGACCACGCCGCCGGGTGGCGCCTCCGCGACGTCCGCCACGGCCTCGCCCTCCTATCATCATCATCATCGTCATCATACCTCTCCCCCCTCGGCGACCGCGGCTTCTTCCCCGACGTCGTCGTCTGCGACCCCATGCGCCGGCGACACGTGCGGGTTCCCCCTATCCCCGACGACCTCACGGCCGGCGTCCGGCGGATCGCCGTCGAGCACTTCGACTACCTGCTCGCTCCCGCCGGCCGAGACGGCTCGTCGTTCCGGGTGGTGTGCAGGCCCAAGCTGCCGAAGCAGTGCGACGTCACCGTCTTCGTCTTCTCCTCAGGCGCCGCGTTCTGGCGAGCCGCCGTGCTGGACGCCTGCGCCGCCACCGAGAAGTTGTTCCTCCCCCAATCCGTGCACGGCTACGTCTACTGGCGGACGCATTCCTCCGGCACATTGCTCATGCTGGACACTCGCGACATGGATTTCTTCTTTGTTAACATTCAGACCAACAAGTGTGTCATTGGGGAGGCAGAGGAAGTAGGCAGGCTTGCGGTGTTCAACACCATTGTTGATGTTGGTGTCCACAAGGTGGAGATCCTCTCCAAGGCAATTAGGGGCGGTGCCGACGAACCGTGGCGGCACGACAGGACTATCCCATTGCTCCCTGGTTACAAATGGAGGGCTGCAAGAATGGCTGAGGGGTACTTACTCCTACATGGGATTGTAGGTAACAACTCCTGGTCTACTCCTGGTATTCAGCTACAGCATTTCACACTGGACCTCAAGACGCTTAAGCTTGAGAGTCTGTGTGACTCGATATCCCGAGGAAGGCATCATCATCCTCAATTCGACTTGTACAGAAGCTTCCCGCCACCATTATCGCTTTCAAGCATATGACAATAACTTGCCAAGGGGGACTGAGCAACTTCGGTTGTCAAGCTGTATCTGATGCCTTAAGGAGGATGCCATGGAAGAGGAAGACCAGCTGCTATACTGCCGTTGTTGGTATCATATTTATGTACTACCGTACTAGCTAGTTCGATCAGCTGTTCCATTTGAATTCCACAGTGGTTTAACTTCTGAAGCCATGCTACTCTTTTTTTGCCCTTCTGCTGCATTCTGGAACTAAACAGAGTAGTCGGTCTGCAAAGCAAGGCATTCAAGCTCCCCAGCCACTGATGTAGGATGCACTTCAGTGTATGCTCGTTGTTGTTAAGTTCATAGTTATCCTTAATCTGATGTCATCAGTATAAACATG]
[+] EMBL AK069878 [GATCCGATCCACTCCCCGCCGCCGGTAGCCGGGGCGGCGGCAGGGATGGCGTGTTCGCTGTTGCTGACCATCCTCCCCGAGGAGCTTGTGGTGGAGATCCTAATCCGCCTCACCGACCTCGCCGACCTCGCCCGCGCCGCCTCCGCCTGCAAGCCCCTCCGCCGCCTCATCACCTCCCGCGCCTTCCTCGCCCGCCTCCACGCGCTCCACGCCAAGCCCCTCCTCGGACTCCTCCTGCTGGAGAGAGACCGCTGCGGCTTCCTCCCCGCCGCTACCGCCGTCGCCGCCGCCGTCGCCCGCGCGTCCGACTTCGCCTTCTCCTTCCTCCCCGACCACGCCGCCGGGTGGCGCCTCCGCGACGTCCGCCACGGCCTCGCCCTCCTATCATCATCATCATCGTCATCATACCTCTCCCCCCTCGGCGACCGCGGCTTCTTCCCCGACGTCGTCGTCTGCGACCCCATGCGCCGGCGACACGTGCGGGTTCCCCCTATCCCCGACGACCTCACGGCCGGCGTCCGGCGGATCGCCGTCGAGCACTTCGACTACCTGCTCGCTCCCGCCGGCCGAGACGGCTCGTCGTTCCGGGTGGTGTGCAGGCCCAAGCTGCCGAAGCAGTGCGACGTCACCGTCTTCGTCTTCTCCTCAGGCGCCGCGTTCTGGCGAGCCGCCGTGCTGGACGCCTGCGCCGCCACCGAGAAGTTGTTCCTCCCCCAATCCGTGCACGGCTACGTCTACTGGCGGACGCATTCCTCCGGCACATTGCTCATGCTGGACACTCGCGACATGGATTTCTTCTTTGTTAACATTCAGACCAACAAGTGTGTCATTGGGGAGGCAGAGGAAGTAGGCAGGCTTGCGGTGTTCAACACCATTGTTGATGTTGGTGTCCACAAGGTGGAGATCCTCTCCAAGGCAATTAGGGGCGGTGCCGACGAACCGTGGCGGCACGACAGGACTATCCCATTGCTCCCTGGTTACAAATGGAGGGCTGCAAGAATGGCTGAGGGGTACTTACTCCTACATGGGATTGTAGGTAACAACTCCTGGTCTACTCCTGGTATTCAGCTACAGCATTTCACACTGGACCTCAAGACGCTTAAGCTTGAGAGTCTGTGTGACTCGATATCCCGAGGAAGGCATCATCATCCTCAATTCGACTTGTACAGAAGCTTCCCGCCACCATTATCGCTTTCAAGCATATGACAATAACTTGCCAAGGGGGACTGAGCAACTTCGGTTGTCAAGCTGTATCTGATGCCTTAAGGAGGATGCCATGGAAGAGGAAGACCAGCTGCTATACTGCCGTTGTTGGTATCATATTTATGTACTACCGTACTAGCTAGTTCGATCAGCTGTTCCATTTGAATTCCACAGTGGTTTAACTTCTGAAGCCATGCTACTCTTTTTTTGCCCTTCTGCTGCATTCTGGAACTAAACAGAGTAGTCGGTCTGCAAAGCAAGGCATTCAAGCTCCCCAGCCACTGATGTAGGATGCACTTCAGTGTATGCTCGTTGTTGTTAAGTTCATAGTTATCCTTAATCTGATGTCATCAGTATAAACATG]
consensusID : consensus_2517#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 775 fasta sequence
[AGGCAGGCTTGCGGTGTTCAACACCATTGTTGATGTTGGTGTCCACAAGGTGGAGATCCTCTCCAAGGCAATTAGGGGCGGTGCCGACGAACCGTGGCGGCACGACAGGACTATCCCATTGCTCCCTGGTTACAAATGGAGGGCTGCAAGAATGGCTGAGGGGTACTTACTCCTACATGGGATTGTAGGTAACAACTCCTGGTCTACTCCTGGTATTCAGCTACAGCATTTCACACTGGACCTCAAGACGCTTAAGCTTGAGAGTCTGTGTGACTCGATATCCCGAGGAAGGCATCATCATCCTCAATTCGACTTGTACAGAAGCTTCCCGCCACCATTATCGCTTTCAAGCATATGACAATAACTTGCCAAGGGGGACTGAGCAACTTCGGTTGTCAAGCTGTATCTGATGCCTTAAGGAGGATGCCATGGAAGAGGAAGACCAGCTGCTATACTGCCGTTGTTGAGTAGTCGGTCTGCAAAGCAAGGCATTCAAGCTCCCCAGCCACTGATGTAGGATGCACTTCAGTGTATGCTCGTTGTTGTTAAGTTCATAGTTATCCTTAATCTGATGTCATCAGTATAAACATGTTTTTCCATCCTTTGGTTGACAGCAAGCAATGCCTCTAAAGATATCCATAAATTGACAGATATCTCTCTACCAGAAAGCCTCTAGGGGATGTATCATGTGGCACCTTGTTCATGTAGTATGTGTTCCAGATCAATTTAACCCAGGGAAGAGGCATCCTATTATAAACCTTACGCAGGCTTTTCA]
[-] EMBL CB670699 [AGGCAGGCTTGCGGTGTTCAACACCATTGTTGATGTTGGTGTCCACAAGGTGGAGATCCTCTCCAAGGCAATTAGGGGCGGTGCCGACGAACCGTGGCGGCACGACAGGACTATCCCATTGCTCCCTGGTTACAAATGGAGGGCTGCAAGAATGGCTGAGGGGTACTTACTCCTACATGGGATTGTAGGTAACAACTCCTGGTCTACTCCTGGTATTCAGCTACAGCATTTCACACTGGACCTCAAGACGCTTAAGCTTGAGAGTCTGTGTGACTCGATATCCCGAGGAAGGCATCATCATCCTCAATTCGACTTGTACAGAAGCTTCCCGCCACCATTATCGCTTTCAAGCATATGACAATAACTTGCCAAGGGGGACTGAGCAACTTCGGTTGTCAAGCTGTATCTGATGCCTTAAGGAGGATGCCATGGAAGAGGAAGACCAGCTGCTATACTGCCGTTGTTGAGTAGTCGGTCTGCAAAGCAAGGCATTCAAGCTCCCCAGCCACTGATGTAGGATGCACTTCAGTGTATGCTCGTTGTTGTTAAGTTCATAGTTATCCTTAATCTGATGTCATCAGTATAAACATGTTTTTCCATCCTTTGGTTGACAGCAAGCAATGCCTCTAAAGATATCCATAAATTGACAGATATCTCTCTACCAGAAAGCCTCTAGGGGATGTATCATGTGGCACCTTGTTCATGTAGTATGTGTTCCAGATCAATTTAACCCAGGGAAGAGGCATCCTATTATAAACCTTACGCAGGCTTTTCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2517#0 GATCCGATCCACTCCCCGCCGCCGGTAGCCGGGGCGGCGGCAGGGATGGCGTGTTCGCTG 60
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 TTGCTGACCATCCTCCCCGAGGAGCTTGTGGTGGAGATCCTAATCCGCCTCACCGACCTC 120
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 GCCGACCTCGCCCGCGCCGCCTCCGCCTGCAAGCCCCTCCGCCGCCTCATCACCTCCCGC 180
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 GCCTTCCTCGCCCGCCTCCACGCGCTCCACGCCAAGCCCCTCCTCGGACTCCTCCTGCTG 240
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 GAGAGAGACCGCTGCGGCTTCCTCCCCGCCGCTACCGCCGTCGCCGCCGCCGTCGCCCGC 300
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 GCGTCCGACTTCGCCTTCTCCTTCCTCCCCGACCACGCCGCCGGGTGGCGCCTCCGCGAC 360
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 GTCCGCCACGGCCTCGCCCTCCTATCATCATCATCATCGTCATCATACCTCTCCCCCCTC 420
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 GGCGACCGCGGCTTCTTCCCCGACGTCGTCGTCTGCGACCCCATGCGCCGGCGACACGTG 480
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 CGGGTTCCCCCTATCCCCGACGACCTCACGGCCGGCGTCCGGCGGATCGCCGTCGAGCAC 540
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 TTCGACTACCTGCTCGCTCCCGCCGGCCGAGACGGCTCGTCGTTCCGGGTGGTGTGCAGG 600
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 CCCAAGCTGCCGAAGCAGTGCGACGTCACCGTCTTCGTCTTCTCCTCAGGCGCCGCGTTC 660
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 TGGCGAGCCGCCGTGCTGGACGCCTGCGCCGCCACCGAGAAGTTGTTCCTCCCCCAATCC 720
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 GTGCACGGCTACGTCTACTGGCGGACGCATTCCTCCGGCACATTGCTCATGCTGGACACT 780
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 CGCGACATGGATTTCTTCTTTGTTAACATTCAGACCAACAAGTGTGTCATTGGGGAGGCA 840
consensus_2517#1 ------------------------------------------------------------
consensus_2517#0 GAGGAAGTAGGCAGGCTTGCGGTGTTCAACACCATTGTTGATGTTGGTGTCCACAAGGTG 900
consensus_2517#1 --------AGGCAGGCTTGCGGTGTTCAACACCATTGTTGATGTTGGTGTCCACAAGGTG 52
****************************************************
consensus_2517#0 GAGATCCTCTCCAAGGCAATTAGGGGCGGTGCCGACGAACCGTGGCGGCACGACAGGACT 960
consensus_2517#1 GAGATCCTCTCCAAGGCAATTAGGGGCGGTGCCGACGAACCGTGGCGGCACGACAGGACT 112
************************************************************
consensus_2517#0 ATCCCATTGCTCCCTGGTTACAAATGGAGGGCTGCAAGAATGGCTGAGGGGTACTTACTC 1020
consensus_2517#1 ATCCCATTGCTCCCTGGTTACAAATGGAGGGCTGCAAGAATGGCTGAGGGGTACTTACTC 172
************************************************************
consensus_2517#0 CTACATGGGATTGTAGGTAACAACTCCTGGTCTACTCCTGGTATTCAGCTACAGCATTTC 1080
consensus_2517#1 CTACATGGGATTGTAGGTAACAACTCCTGGTCTACTCCTGGTATTCAGCTACAGCATTTC 232
************************************************************
consensus_2517#0 ACACTGGACCTCAAGACGCTTAAGCTTGAGAGTCTGTGTGACTCGATATCCCGAGGAAGG 1140
consensus_2517#1 ACACTGGACCTCAAGACGCTTAAGCTTGAGAGTCTGTGTGACTCGATATCCCGAGGAAGG 292
************************************************************
consensus_2517#0 CATCATCATCCTCAATTCGACTTGTACAGAAGCTTCCCGCCACCATTATCGCTTTCAAGC 1200
consensus_2517#1 CATCATCATCCTCAATTCGACTTGTACAGAAGCTTCCCGCCACCATTATCGCTTTCAAGC 352
************************************************************
consensus_2517#0 ATATGACAATAACTTGCCAAGGGGGACTGAGCAACTTCGGTTGTCAAGCTGTATCTGATG 1260
consensus_2517#1 ATATGACAATAACTTGCCAAGGGGGACTGAGCAACTTCGGTTGTCAAGCTGTATCTGATG 412
************************************************************
consensus_2517#0 CCTTAAGGAGGATGCCATGGAAGAGGAAGACCAGCTGCTATACTGCCGTTGTTG-GTATC 1319
consensus_2517#1 CCTTAAGGAGGATGCCATGGAAGAGGAAGACCAGCTGCTATACTGCCGTTGTTGAGTAGT 472
****************************************************** ***
consensus_2517#0 ATATTTATGTACTACCGTACTAGCTAGTTCGATCAGCTGTTCCATT-TGAATTCCACAGT 1378
consensus_2517#1 CGGTCTGCAAAGCAAGGCATTCAAGCTCCCCAGCCACTGATGTAGGATGCACTTCAGTGT 532
* * * * * * * * * * *** * * ** * * ** **
consensus_2517#0 GGTTTAACTTCTG---AAGCCAT-GCTACTCTTTTTTTGCCCT--TCTGCTGCATTCTGG 1432
consensus_2517#1 ATGCTCGTTGTTGTTAAGTTCATAGTTATCCTTAATCTGATGTCATCAGTATAAACATGT 592
* * ** * *** * ** *** * ** * ** * * **
consensus_2517#0 AACTAAACAGAGTAGTCGGTCTGCAAAGCAAGGCATTCAAGCTCCCCAGCCACTGATGTA 1492
consensus_2517#1 TTTTCCATCCTTTGGTTGA-CAGCAAGCAATGCCTCTAAAGATATCCATAAATTGACAGA 651
* * * ** * * **** * * * * *** * *** * *** *
consensus_2517#0 GGATGCACTTCAGTGTATGCTCGTTGTTGTTAAGTTCATAGT-TATCCTTAATCTG--AT 1549
consensus_2517#1 TATCTCTCTACCAGAAAGCCTCTAGGGGATGTATCATGTGGCACCTTGTTCATGTAGTAT 711
* ** * * *** * * * * * * ** ** * **
consensus_2517#0 GTCATCAGTATAAACATG------------------------------------------ 1567
consensus_2517#1 GTGTTCCAGATCAATTTAACCCAGGGAAGAGGCATCCTATTATAAACCTTACGCAGGCTT 771
** ** ** ** *
consensus_2517#0 ----
consensus_2517#1 TTCA 775
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||