cluster # 253

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Oryza sativa
cluster # 253 cluster # 253 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_253#0 length = 1265 sequences # 1

consensus_253#1 length = 224 sequences # 1

consensusID : consensus_253#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1265
fasta sequence

                              [TATAGCAAGCTATCCTACAGCCAGCCACGCTGCACCGAACCCTCCAATCCTTGGAACTTGAACCCCTTCAAATCACACCCAGTAGGCTACTAGTAGTACTTCTCTGCACCAATTCCATCGCCAATAGCAGCCACTACAAGTCTTACATCTCTCCTTTCCTCCTCTCTCTGCCATTGCTAGGAGCTTGCATTTCTTGGTAGCTTCATCAGCTAGCTGCTTTCTCCCTCCCCAATCTCTCATTCTTCAGGCCAGGATATGAAGATTTTCAGCTGGGTAGCCAACAAGATCAGTGGGAAGCAAGAAGCAAATCGGTTTCCCGCAAATTCTTCTGCGCCTTACCGTGCTAACGTGTCAGATTGTCGAGAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATTCGAAACGCTACTAGCAATCAAAGATCAAGCAGAAGCTCAACGCTCGCATGATGATGACCAAGTAGGTTTACAAAAGCGTGCCGATGGGGAAGACAATGAGAAGCATATTAGACAGTTGATCAACAAAAGGATCATTGTAAGTAAATCAAAGAATTCGTTAGGAAAGAAAGGAAATACACTCAAGCCGAGATCAGTCGCTTCGTTGCTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCGTAGTTCCAGAACCAAGGAACACATTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAATATTGCAGAAGAAAATACACCCGCAAAATTCTTCCACGCTAGTTGCTAAGAGGCATTTGGACTGGAAGCCAGATGAGACAGAAATCAATGAGTGCCTGGAGGATGCACTGCGTGATCTAGACGATGATGGTGCAAAATGGGTCAAAACTGATTCAGAGTATATTGTGCTTGAAATGTAAAGTTGGGTGAATATGTTAGTTCGTTCATGCCAGGTTCCAAAGGTCCTGGCAAGCTTGGGGTTTATGGTGTTACTACGTAATGATATAAATATGGGATATAGTTAGCAATGAAGCTCTATGATCATGTAATGCTCCTCCATTATTTCTGACATGAACCATCTGTAATTTGAATCATGATAAGGAGGTTCTGGGACAAAGGCCTATTCCATGTGTCTACTCTCTTCTGCCCTGAAACTGTAAAGAACGCATTCAAT]

[+] EMBL AK068870             [TATAGCAAGCTATCCTACAGCCAGCCACGCTGCACCGAACCCTCCAATCCTTGGAACTTGAACCCCTTCAAATCACACCCAGTAGGCTACTAGTAGTACTTCTCTGCACCAATTCCATCGCCAATAGCAGCCACTACAAGTCTTACATCTCTCCTTTCCTCCTCTCTCTGCCATTGCTAGGAGCTTGCATTTCTTGGTAGCTTCATCAGCTAGCTGCTTTCTCCCTCCCCAATCTCTCATTCTTCAGGCCAGGATATGAAGATTTTCAGCTGGGTAGCCAACAAGATCAGTGGGAAGCAAGAAGCAAATCGGTTTCCCGCAAATTCTTCTGCGCCTTACCGTGCTAACGTGTCAGATTGTCGAGAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATTCGAAACGCTACTAGCAATCAAAGATCAAGCAGAAGCTCAACGCTCGCATGATGATGACCAAGTAGGTTTACAAAAGCGTGCCGATGGGGAAGACAATGAGAAGCATATTAGACAGTTGATCAACAAAAGGATCATTGTAAGTAAATCAAAGAATTCGTTAGGAAAGAAAGGAAATACACTCAAGCCGAGATCAGTCGCTTCGTTGCTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCGTAGTTCCAGAACCAAGGAACACATTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAATATTGCAGAAGAAAATACACCCGCAAAATTCTTCCACGCTAGTTGCTAAGAGGCATTTGGACTGGAAGCCAGATGAGACAGAAATCAATGAGTGCCTGGAGGATGCACTGCGTGATCTAGACGATGATGGTGCAAAATGGGTCAAAACTGATTCAGAGTATATTGTGCTTGAAATGTAAAGTTGGGTGAATATGTTAGTTCGTTCATGCCAGGTTCCAAAGGTCCTGGCAAGCTTGGGGTTTATGGTGTTACTACGTAATGATATAAATATGGGATATAGTTAGCAATGAAGCTCTATGATCATGTAATGCTCCTCCATTATTTCTGACATGAACCATCTGTAATTTGAATCATGATAAGGAGGTTCTGGGACAAAGGCCTATTCCATGTGTCTACTCTCTTCTGCCCTGAAACTGTAAAGAACGCATTCAAT]




>consensus_253#0
TATAGCAAGCTATCCTACAGCCAGCCACGCTGCACCGAACCCTCCAATCCTTGGAACTTG
AACCCCTTCAAATCACACCCAGTAGGCTACTAGTAGTACTTCTCTGCACCAATTCCATCG
CCAATAGCAGCCACTACAAGTCTTACATCTCTCCTTTCCTCCTCTCTCTGCCATTGCTAG
GAGCTTGCATTTCTTGGTAGCTTCATCAGCTAGCTGCTTTCTCCCTCCCCAATCTCTCAT
TCTTCAGGCCAGGATATGAAGATTTTCAGCTGGGTAGCCAACAAGATCAGTGGGAAGCAA
GAAGCAAATCGGTTTCCCGCAAATTCTTCTGCGCCTTACCGTGCTAACGTGTCAGATTGT
CGAGAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAAT
AAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAA
GATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATTCGAAACGCTA
CTAGCAATCAAAGATCAAGCAGAAGCTCAACGCTCGCATGATGATGACCAAGTAGGTTTA
CAAAAGCGTGCCGATGGGGAAGACAATGAGAAGCATATTAGACAGTTGATCAACAAAAGG
ATCATTGTAAGTAAATCAAAGAATTCGTTAGGAAAGAAAGGAAATACACTCAAGCCGAGA
TCAGTCGCTTCGTTGCTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCGTAGTTCCA
GAACCAAGGAACACATTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAATATTGCAG
AAGAAAATACACCCGCAAAATTCTTCCACGCTAGTTGCTAAGAGGCATTTGGACTGGAAG
CCAGATGAGACAGAAATCAATGAGTGCCTGGAGGATGCACTGCGTGATCTAGACGATGAT
GGTGCAAAATGGGTCAAAACTGATTCAGAGTATATTGTGCTTGAAATGTAAAGTTGGGTG
AATATGTTAGTTCGTTCATGCCAGGTTCCAAAGGTCCTGGCAAGCTTGGGGTTTATGGTG
TTACTACGTAATGATATAAATATGGGATATAGTTAGCAATGAAGCTCTATGATCATGTAA
TGCTCCTCCATTATTTCTGACATGAACCATCTGTAATTTGAATCATGATAAGGAGGTTCT
GGGACAAAGGCCTATTCCATGTGTCTACTCTCTTCTGCCCTGAAACTGTAAAGAACGCAT
TCAAT

consensusID : consensus_253#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 224
fasta sequence

                              [TGATCTTGCGGCTTAATCGAGTTCTAATGCGCAGGTGCTAACGTGTCAGATTGTCGAAAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATT]

[+] EMBL AA750519             [TGATCTTGCGGCTTAATCGAGTTCTAATGCGCAGGTGCTAACGTGTCAGATTGTCGAAAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATT]




>consensus_253#1
TGATCTTGCGGCTTAATCGAGTTCTAATGCGCAGGTGCTAACGTGTCAGATTGTCGAAAG
GATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAATAAGCAG
ATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAAGATACC
GTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_253#0      TATAGCAAGCTATCCTACAGCCAGCCACGCTGCACCGAACCCTCCAATCCTTGGAACTTG 60
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      AACCCCTTCAAATCACACCCAGTAGGCTACTAGTAGTACTTCTCTGCACCAATTCCATCG 120
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      CCAATAGCAGCCACTACAAGTCTTACATCTCTCCTTTCCTCCTCTCTCTGCCATTGCTAG 180
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      GAGCTTGCATTTCTTGGTAGCTTCATCAGCTAGCTGCTTTCTCCCTCCCCAATCTCTCAT 240
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      TCTTCAGGCCAGGATATGAAGATTTTCAGCTGGGTAGCCAACAAGATCAGTGGGAAGCAA 300
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      GAAGCAAATCGGTTTCCCGCAAATTCTTCTGCGCCTTACCGTGCTAACGTGTCAGATTGT 360
consensus_253#1      -TGATCTTGCGGCTTAAT-CGAGTTCTAATGCGCAG----GTGCTAACGTGTCAGATTGT 54
                              *** **    * * ****  *****      ********************

consensus_253#0      CGAGAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAAT 420
consensus_253#1      CGAAAGGATGAATTCAGTGATTGGCCCCAATCATTGCTTGCTATTGGGACATTTGGAAAT 114
                     *** ********************************************************

consensus_253#0      AAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAA 480
consensus_253#1      AAGCAGATTGAGGAGGTAGCTCAGGTGGAGAATTCATCCGACAATGTGCAGTCAGTGCAA 174
                     ************************************************************

consensus_253#0      GATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATTCGAAACGCTA 540
consensus_253#1      GATACCGTCAAATTTACAGAGGAAGAAGTAGACAAGATACGGAAAGAATT---------- 224
                     **************************************************          

consensus_253#0      CTAGCAATCAAAGATCAAGCAGAAGCTCAACGCTCGCATGATGATGACCAAGTAGGTTTA 600
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      CAAAAGCGTGCCGATGGGGAAGACAATGAGAAGCATATTAGACAGTTGATCAACAAAAGG 660
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      ATCATTGTAAGTAAATCAAAGAATTCGTTAGGAAAGAAAGGAAATACACTCAAGCCGAGA 720
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      TCAGTCGCTTCGTTGCTCAAGTTATTCATGTGTAAGGGTGGCTTTACCTCCGTAGTTCCA 780
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      GAACCAAGGAACACATTTCCTCAATCAAGAATGGAGAAGTTGCTCAAGGCAATATTGCAG 840
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      AAGAAAATACACCCGCAAAATTCTTCCACGCTAGTTGCTAAGAGGCATTTGGACTGGAAG 900
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      CCAGATGAGACAGAAATCAATGAGTGCCTGGAGGATGCACTGCGTGATCTAGACGATGAT 960
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      GGTGCAAAATGGGTCAAAACTGATTCAGAGTATATTGTGCTTGAAATGTAAAGTTGGGTG 1020
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      AATATGTTAGTTCGTTCATGCCAGGTTCCAAAGGTCCTGGCAAGCTTGGGGTTTATGGTG 1080
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      TTACTACGTAATGATATAAATATGGGATATAGTTAGCAATGAAGCTCTATGATCATGTAA 1140
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      TGCTCCTCCATTATTTCTGACATGAACCATCTGTAATTTGAATCATGATAAGGAGGTTCT 1200
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      GGGACAAAGGCCTATTCCATGTGTCTACTCTCTTCTGCCCTGAAACTGTAAAGAACGCAT 1260
consensus_253#1      ------------------------------------------------------------
                                                                                 

consensus_253#0      TCAAT 1265
consensus_253#1      -----