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Oryza sativa
cluster # 2534 cluster # 2534       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2534#0 length = 1078 sequences # 1  
consensus_2534#1 length = 979 sequences # 1  

consensusID : consensus_2534#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1078
fasta sequence
                              [ATTCGATCACATTTACTCCTACTCGAGATCAAGATCTTGGTGGTACTACTCATCGATTAATTAACTTGTACTCATCGAGACCCTGATACTGATCAATCAATCAAACAATCAGTCAGTGGTTAGTGCTCGTCGTCAGAGATAGCAAAAAGGCGCAGGCAAGAACGAGGAGAGGACGGACAGGCGCCATCAGAAAAGGAAAGAAACGTGAGAGAGAGAGACACAGATCGCGGCGGCGATGGCCGGAGATGGGGAGGATGGCGGCGAGAGGGTGCGGCTGTTCGTCGGCCAGGTGCCACGCAGCATGGCGGAGGAGGACATCCTCGCCGTGGTCCGCGCCGCCGCACGCGCCGACGACGCCACCGTCATCCGCGACCGCGCCACCGGCGCCTCCCGCGGTTGCTGCTTCGTGGTGTGCTCGTCGAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGCGTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCAGAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTTTTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAAAGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGAAGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTTGGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTCTAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGATGAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT]

[+] EMBL AK100642             [ATTCGATCACATTTACTCCTACTCGAGATCAAGATCTTGGTGGTACTACTCATCGATTAATTAACTTGTACTCATCGAGACCCTGATACTGATCAATCAATCAAACAATCAGTCAGTGGTTAGTGCTCGTCGTCAGAGATAGCAAAAAGGCGCAGGCAAGAACGAGGAGAGGACGGACAGGCGCCATCAGAAAAGGAAAGAAACGTGAGAGAGAGAGACACAGATCGCGGCGGCGATGGCCGGAGATGGGGAGGATGGCGGCGAGAGGGTGCGGCTGTTCGTCGGCCAGGTGCCACGCAGCATGGCGGAGGAGGACATCCTCGCCGTGGTCCGCGCCGCCGCACGCGCCGACGACGCCACCGTCATCCGCGACCGCGCCACCGGCGCCTCCCGCGGTTGCTGCTTCGTGGTGTGCTCGTCGAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGCGTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCAGAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTTTTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAAAGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGAAGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTTGGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTCTAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGATGAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT]


>consensus_2534#0 ATTCGATCACATTTACTCCTACTCGAGATCAAGATCTTGGTGGTACTACTCATCGATTAA TTAACTTGTACTCATCGAGACCCTGATACTGATCAATCAATCAAACAATCAGTCAGTGGT TAGTGCTCGTCGTCAGAGATAGCAAAAAGGCGCAGGCAAGAACGAGGAGAGGACGGACAG GCGCCATCAGAAAAGGAAAGAAACGTGAGAGAGAGAGACACAGATCGCGGCGGCGATGGC CGGAGATGGGGAGGATGGCGGCGAGAGGGTGCGGCTGTTCGTCGGCCAGGTGCCACGCAG CATGGCGGAGGAGGACATCCTCGCCGTGGTCCGCGCCGCCGCACGCGCCGACGACGCCAC CGTCATCCGCGACCGCGCCACCGGCGCCTCCCGCGGTTGCTGCTTCGTGGTGTGCTCGTC GAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGC GTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCA GAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTT TTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAA AGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGA AGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTT GGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTC TAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGAT GAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGGTACCAGGGCATTATGGACACAC GAAGAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACT CCAGGGACTCAACACAAATATATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT



consensusID : consensus_2534#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 979
fasta sequence
                              [CCATTGATTTGCTCTTGCCCGTGTGTGAGAAGCAGAAGAAGAAGATGATGAAAATTTGGAATTTATTTGGGTTCTTGCAGGTTGCTGCTTCGTGGTGTGCTCGTCGAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGCGTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCAGAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTTTTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAAAGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGAAGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTTGGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTCTAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGATGAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGACTGAAGGAACAACGGATCCAGAATTGAAAGATCTAATGAAGATGACAAACGACAAACTTGAGATGCTAGTGACTGAGCTCAAGAGCGTGGTGAACTTATTAGAGAATCGAGTTACATATAATGATCCAATACAGCCAATTCAGCATTCTCTCTTACCTGTAGAGCATGACGAGAAGCAATATAAGCCTAATGAGTGTGATTCCAAAACGTTAGAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT]

[+] EMBL AK070340             [CCATTGATTTGCTCTTGCCCGTGTGTGAGAAGCAGAAGAAGAAGATGATGAAAATTTGGAATTTATTTGGGTTCTTGCAGGTTGCTGCTTCGTGGTGTGCTCGTCGAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGCGTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCAGAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTTTTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAAAGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGAAGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTTGGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTCTAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGATGAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGACTGAAGGAACAACGGATCCAGAATTGAAAGATCTAATGAAGATGACAAACGACAAACTTGAGATGCTAGTGACTGAGCTCAAGAGCGTGGTGAACTTATTAGAGAATCGAGTTACATATAATGATCCAATACAGCCAATTCAGCATTCTCTCTTACCTGTAGAGCATGACGAGAAGCAATATAAGCCTAATGAGTGTGATTCCAAAACGTTAGAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT]


>consensus_2534#1 CCATTGATTTGCTCTTGCCCGTGTGTGAGAAGCAGAAGAAGAAGATGATGAAAATTTGGA ATTTATTTGGGTTCTTGCAGGTTGCTGCTTCGTGGTGTGCTCGTCGAGGGAGGAGGCAGA CAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGCGTCCAGGGCAATGCA GGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCAGAAGCTTTTCATTGG CATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTTTTCGCAGTACGGAAA TATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAAAGCTGCAGCCTGTGC TATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGAAGCTTTGAATGGCAC ACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTTGGCTGACACTGAAAG GGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTCTAAGCCCTTAAGATT TTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGATGAGCTTTCTTCCTCC ATATAATGTATTGGATTACAAGACTGAAGGAACAACGGATCCAGAATTGAAAGATCTAAT GAAGATGACAAACGACAAACTTGAGATGCTAGTGACTGAGCTCAAGAGCGTGGTGAACTT ATTAGAGAATCGAGTTACATATAATGATCCAATACAGCCAATTCAGCATTCTCTCTTACC TGTAGAGCATGACGAGAAGCAATATAAGCCTAATGAGTGTGATTCCAAAACGTTAGAGGT ACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTACAGCACTATGTACCCACA TGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATATTTCCAGGAACAGATCC TAAAATTTCGAACCTGATT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2534#0      ATTCGATCACATTTACTCCTACTCGAGATCAAGATCTTGGTGGTACTACTCATCGATTAA 60
consensus_2534#1      ------------------------------------------------------------
                                                                                  

consensus_2534#0      TTAACTTGTACTCATCGAGACCCTGATACTGATCAATCAATCAAACAATCAGTCAGTGGT 120
consensus_2534#1      ------------------------------------------------------------
                                                                                  

consensus_2534#0      TAGTGCTCGTCGTCAGAGATAGCAAAAAGGCGCAGGCAAGAACGAGGAGAGGACGGACAG 180
consensus_2534#1      ------------------------------------------------------------
                                                                                  

consensus_2534#0      GCGCCATCAGAAAAGGAAAGAAACGTGAGAGAGAGAGACACAGATCGCGGCGGCGATGGC 240
consensus_2534#1      ------------------------------------------------------------
                                                                                  

consensus_2534#0      CGGAGATGGGGAGGATGGCGGCGAGAGGGTGCGGCTGTTCGTCGGCCAGGTGCCACGCAG 300
consensus_2534#1      ------------------------------------------------------------
                                                                                  

consensus_2534#0      CATGGCGGAGGAGGACATCCTCGCCGTGGTCCGCGCCGCCGCACGCGCCGACGACGCCAC 360
consensus_2534#1      ------CCATTGATTTGCTCTTGCCCGTGTGTGAGAAGCAGAAGAAGAAGATGATGAAA- 53
                              *          ** ***   **  * *  ** * *   *  ** ** *  * 

consensus_2534#0      CGTCATCCGCGACCGCGCCACCGGCGCCTCCCGCGGTTGCTGCTTCGTGGTGTGCTCGTC 420
consensus_2534#1      ----ATTTGGAATT----TATTTGGGTTCTTGCAGGTTGCTGCTTCGTGGTGTGCTCGTC 105
                          **  *  *       *   * *        **************************

consensus_2534#0      GAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGC 480
consensus_2534#1      GAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGC 165
                      ************************************************************

consensus_2534#0      GTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCA 540
consensus_2534#1      GTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCA 225
                      ************************************************************

consensus_2534#0      GAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTT 600
consensus_2534#1      GAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTT 285
                      ************************************************************

consensus_2534#0      TTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAA 660
consensus_2534#1      TTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAA 345
                      ************************************************************

consensus_2534#0      AGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGA 720
consensus_2534#1      AGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGA 405
                      ************************************************************

consensus_2534#0      AGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTT 780
consensus_2534#1      AGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTT 465
                      ************************************************************

consensus_2534#0      GGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTC 840
consensus_2534#1      GGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTC 525
                      ************************************************************

consensus_2534#0      TAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGAT 900
consensus_2534#1      TAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGAT 585
                      ************************************************************

consensus_2534#0      GAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGGTACCAGGGCATTATGGACACA- 959
consensus_2534#1      GAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGAC-TGAAGGAACAACGGATCCAG 644
                      *************************************     * ** *  * ***  ** 

consensus_2534#0      ---CGAAGAACCCATTGGCATTGTACAGCACTATGTACCC-ACATGTCAATCAAGGAAAT 1015
consensus_2534#1      AATTGAAAGATCTAATGAAGATG-ACAA-ACGACAAACTTGAGATGCTAGTGACTGAGCT 702
                          ***  * * * **    ** ***  ** *   **   * ***  * * *  **  *

consensus_2534#0      TTACTCCAGGG---ACTCAACACA-AATATATTTCCAGGAACAGATCCTAAAATTTCGAA 1071
consensus_2534#1      CAAGAGCGTGGTGAACTTATTAGAGAATCGAGTTACATATAATGATCCAATACAGCCAAT 762
                        *   *  **   *** *  * * ***  * ** **   *  ***** * *    * * 

consensus_2534#0      CCTG-ATT---------------------------------------------------- 1078
consensus_2534#1      TCAGCATTCTCTCTTACCTGTAGAGCATGACGAGAAGCAATATAAGCCTAATGAGTGTGA 822
                       * * ***                                                    

consensus_2534#0      ------------------------------------------------------------
consensus_2534#1      TTCCAAAACGTTAGAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTA 882
                                                                                  

consensus_2534#0      ------------------------------------------------------------
consensus_2534#1      CAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATAT 942
                                                                                  

consensus_2534#0      -------------------------------------
consensus_2534#1      ATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT 979
                                                           




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)