These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2534#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1078 fasta sequence [ATTCGATCACATTTACTCCTACTCGAGATCAAGATCTTGGTGGTACTACTCATCGATTAATTAACTTGTACTCATCGAGACCCTGATACTGATCAATCAATCAAACAATCAGTCAGTGGTTAGTGCTCGTCGTCAGAGATAGCAAAAAGGCGCAGGCAAGAACGAGGAGAGGACGGACAGGCGCCATCAGAAAAGGAAAGAAACGTGAGAGAGAGAGACACAGATCGCGGCGGCGATGGCCGGAGATGGGGAGGATGGCGGCGAGAGGGTGCGGCTGTTCGTCGGCCAGGTGCCACGCAGCATGGCGGAGGAGGACATCCTCGCCGTGGTCCGCGCCGCCGCACGCGCCGACGACGCCACCGTCATCCGCGACCGCGCCACCGGCGCCTCCCGCGGTTGCTGCTTCGTGGTGTGCTCGTCGAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGCGTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCAGAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTTTTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAAAGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGAAGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTTGGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTCTAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGATGAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT] [+] EMBL AK100642 [ATTCGATCACATTTACTCCTACTCGAGATCAAGATCTTGGTGGTACTACTCATCGATTAATTAACTTGTACTCATCGAGACCCTGATACTGATCAATCAATCAAACAATCAGTCAGTGGTTAGTGCTCGTCGTCAGAGATAGCAAAAAGGCGCAGGCAAGAACGAGGAGAGGACGGACAGGCGCCATCAGAAAAGGAAAGAAACGTGAGAGAGAGAGACACAGATCGCGGCGGCGATGGCCGGAGATGGGGAGGATGGCGGCGAGAGGGTGCGGCTGTTCGTCGGCCAGGTGCCACGCAGCATGGCGGAGGAGGACATCCTCGCCGTGGTCCGCGCCGCCGCACGCGCCGACGACGCCACCGTCATCCGCGACCGCGCCACCGGCGCCTCCCGCGGTTGCTGCTTCGTGGTGTGCTCGTCGAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGCGTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCAGAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTTTTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAAAGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGAAGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTTGGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTCTAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGATGAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT] consensusID : consensus_2534#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 979 fasta sequence [CCATTGATTTGCTCTTGCCCGTGTGTGAGAAGCAGAAGAAGAAGATGATGAAAATTTGGAATTTATTTGGGTTCTTGCAGGTTGCTGCTTCGTGGTGTGCTCGTCGAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGCGTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCAGAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTTTTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAAAGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGAAGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTTGGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTCTAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGATGAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGACTGAAGGAACAACGGATCCAGAATTGAAAGATCTAATGAAGATGACAAACGACAAACTTGAGATGCTAGTGACTGAGCTCAAGAGCGTGGTGAACTTATTAGAGAATCGAGTTACATATAATGATCCAATACAGCCAATTCAGCATTCTCTCTTACCTGTAGAGCATGACGAGAAGCAATATAAGCCTAATGAGTGTGATTCCAAAACGTTAGAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT] [+] EMBL AK070340 [CCATTGATTTGCTCTTGCCCGTGTGTGAGAAGCAGAAGAAGAAGATGATGAAAATTTGGAATTTATTTGGGTTCTTGCAGGTTGCTGCTTCGTGGTGTGCTCGTCGAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGCGTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCAGAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTTTTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAAAGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGAAGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTTGGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTCTAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGATGAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGACTGAAGGAACAACGGATCCAGAATTGAAAGATCTAATGAAGATGACAAACGACAAACTTGAGATGCTAGTGACTGAGCTCAAGAGCGTGGTGAACTTATTAGAGAATCGAGTTACATATAATGATCCAATACAGCCAATTCAGCATTCTCTCTTACCTGTAGAGCATGACGAGAAGCAATATAAGCCTAATGAGTGTGATTCCAAAACGTTAGAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTACAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATATATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2534#0 ATTCGATCACATTTACTCCTACTCGAGATCAAGATCTTGGTGGTACTACTCATCGATTAA 60 consensus_2534#1 ------------------------------------------------------------ consensus_2534#0 TTAACTTGTACTCATCGAGACCCTGATACTGATCAATCAATCAAACAATCAGTCAGTGGT 120 consensus_2534#1 ------------------------------------------------------------ consensus_2534#0 TAGTGCTCGTCGTCAGAGATAGCAAAAAGGCGCAGGCAAGAACGAGGAGAGGACGGACAG 180 consensus_2534#1 ------------------------------------------------------------ consensus_2534#0 GCGCCATCAGAAAAGGAAAGAAACGTGAGAGAGAGAGACACAGATCGCGGCGGCGATGGC 240 consensus_2534#1 ------------------------------------------------------------ consensus_2534#0 CGGAGATGGGGAGGATGGCGGCGAGAGGGTGCGGCTGTTCGTCGGCCAGGTGCCACGCAG 300 consensus_2534#1 ------------------------------------------------------------ consensus_2534#0 CATGGCGGAGGAGGACATCCTCGCCGTGGTCCGCGCCGCCGCACGCGCCGACGACGCCAC 360 consensus_2534#1 ------CCATTGATTTGCTCTTGCCCGTGTGTGAGAAGCAGAAGAAGAAGATGATGAAA- 53 * ** *** ** * * ** * * * ** ** * * consensus_2534#0 CGTCATCCGCGACCGCGCCACCGGCGCCTCCCGCGGTTGCTGCTTCGTGGTGTGCTCGTC 420 consensus_2534#1 ----ATTTGGAATT----TATTTGGGTTCTTGCAGGTTGCTGCTTCGTGGTGTGCTCGTC 105 ** * * * * * ************************** consensus_2534#0 GAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGC 480 consensus_2534#1 GAGGGAGGAGGCAGACAAGGCCATCGCCGCGTACCACAACAAGTGCACCCTCCCAGGAGC 165 ************************************************************ consensus_2534#0 GTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCA 540 consensus_2534#1 GTCCAGGGCAATGCAGGTAAAATACGCGGACGGCGAGCTGGAACGATTAGCCGCAGAGCA 225 ************************************************************ consensus_2534#0 GAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTT 600 consensus_2534#1 GAAGCTTTTCATTGGCATGCTTCCAAGGGATGTGAAGGAGAATGAAGTTTCTGCATTGTT 285 ************************************************************ consensus_2534#0 TTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAA 660 consensus_2534#1 TTCGCAGTACGGAAATATTAGACAACTGAAGGTACTGAGAAGTCCACAGAAAACAAGAAA 345 ************************************************************ consensus_2534#0 AGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGA 720 consensus_2534#1 AGCTGCAGCCTGTGCTATCCTGGAATTTGGAAGCAAAGAACATGCTAGAGCGGCCATTGA 405 ************************************************************ consensus_2534#0 AGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTT 780 consensus_2534#1 AGCTTTGAATGGCACACGTGTTGTGTTCAATGGTTCAAGTGCGACTTTGGTTGTTAAGTT 465 ************************************************************ consensus_2534#0 GGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTC 840 consensus_2534#1 GGCTGACACTGAAAGGGAAAAGCAAGCTAGAAAGGCACAGAAAGCTCAGGCTCAACCTTC 525 ************************************************************ consensus_2534#0 TAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGAT 900 consensus_2534#1 TAAGCCCTTAAGATTTTATCTCTTCCCCCAGCTGCTATCAATATCTGGAGCACCACAGAT 585 ************************************************************ consensus_2534#0 GAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGGTACCAGGGCATTATGGACACA- 959 consensus_2534#1 GAGCTTTCTTCCTCCATATAATGTATTGGATTACAAGAC-TGAAGGAACAACGGATCCAG 644 ************************************* * ** * * *** ** consensus_2534#0 ---CGAAGAACCCATTGGCATTGTACAGCACTATGTACCC-ACATGTCAATCAAGGAAAT 1015 consensus_2534#1 AATTGAAAGATCTAATGAAGATG-ACAA-ACGACAAACTTGAGATGCTAGTGACTGAGCT 702 *** * * * ** ** *** ** * ** * *** * * * ** * consensus_2534#0 TTACTCCAGGG---ACTCAACACA-AATATATTTCCAGGAACAGATCCTAAAATTTCGAA 1071 consensus_2534#1 CAAGAGCGTGGTGAACTTATTAGAGAATCGAGTTACATATAATGATCCAATACAGCCAAT 762 * * ** *** * * * *** * ** ** * ***** * * * * consensus_2534#0 CCTG-ATT---------------------------------------------------- 1078 consensus_2534#1 TCAGCATTCTCTCTTACCTGTAGAGCATGACGAGAAGCAATATAAGCCTAATGAGTGTGA 822 * * *** consensus_2534#0 ------------------------------------------------------------ consensus_2534#1 TTCCAAAACGTTAGAGGTACCAGGGCATTATGGACACACGAAGAACCCATTGGCATTGTA 882 consensus_2534#0 ------------------------------------------------------------ consensus_2534#1 CAGCACTATGTACCCACATGTCAATCAAGGAAATTTACTCCAGGGACTCAACACAAATAT 942 consensus_2534#0 ------------------------------------- consensus_2534#1 ATTTCCAGGAACAGATCCTAAAATTTCGAACCTGATT 979 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||