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Oryza sativa
cluster # 2542 cluster # 2542       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2542#0 length = 2439 sequences # 1  
consensus_2542#1 length = 2138 sequences # 1  

consensusID : consensus_2542#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2439
fasta sequence
                              [TCCCGGCAGCCTGGGGTTTCTCTCCCCGTTTCTGTTTCTCGGTGAGGTGAAGTTTTCCGTCTCAGCACACTGCCAGTTCTTCTTCTTGTTCTTCCTACTCGTGGCGCCGCGGCGTCCTCACGGATCGCAAGGTCGGGAATTATCTGGGGTTCTCGGGGTTTGTGGCTCCTTTCCGGTGAAAGGATTCTTTTTTAGCGGGAGATCGGTTGAGTCGGTTTCTTCTGTAGATCTTATCGTTGAGATTTCGTTGTTTATGTTAGGCGAGTCGGGGTGAGACTTATCCGCGTTCCTCCCTGCGATGAAACACGCGATTTTGGATTGTCGTTACGTTTAGGGATTGTGGTTTTAAGGCTGTTCTTCCGTTGTAAATGTTGGTTGCGCCATCCTATAAAAGAAAGGGACTCCTGTCGAGAAACACACCATGCTTCTTCTGTCCTGAAGGTTTGGAAAGGCACATTCTGAGGAGATTTTTCTGTCCTACATCGTAGCCCTTGAATGCAATGGAAGGGGGTGCAACTCTAGCTGATAAGGCTGAATTTAAGGAATGTCTGCGGCTGACCTGGAGCCAGCCTTACATTCTTCAGCTTGTTTTCTCTGCCGGCATCGGTGGTCTTCTTTTCGGATATGATACAGGTGTCATATCTGGAGCACTTCTGTATATTCGAGATGATTTTACTGCGGTCGAAAAGAGCACTGTACTTAGGGAAACGATAGTGAGTATGGCTGTAGCTGGAGCCATAGTTGGAGCAGGATTTGGTGGCTGGATGAACGACAAGTTTGGAAGGAAGCCTTCCATCTTGATCGCCGATTCCCTGTTCCTCGCAGGTGCCTTGATCATGGCCCTTGCCCCAACACCGTTTGTCATCATTATTGGGAGGATCTTTGTTGGTCTTGGGGTTGGAATGGCTTCCATGACAGCACCTTTGTACATTTCTGAAGCCTCTCCAGCTAGAATCAGAGGTGCACTTGTGAGCACAAATGGACTTCTTATTACCGGAGGGCAGTTCATGGCATACCTCATTAATCTGGCCTTCACTAAGGTAAAGGGAACATGGAGGTGGATGCTTGGCATTGCAGGTCTTCCTGCTTTTATTCAGTTCATATTGATGTGTATGCTACCTGAATCACCAAGGTGGCTATACAGACAGGATAGGAAAGAGGAGGCTGAAGCCATATTAAGGAAGATTTACCCCGCGGCTGAGGTTGAAGAAGAGATCGATTCGATGCGCCGATCAATTGAACATGAGAAACAACTGGAGGGCTCCATCGGCGAGCAGAGTCTGGTTGGCAAGCTGACGAAGGCACTGAGCAGCAAGGTCGTCCGCCGTGGGCTCATGGCCGGCGTCATCGCGCAGGTCGCCCAGCAGTTCGTCGGCATCAACACCGTCATGTACTACAGCCCGACGATCGTCCAGCTGGCCGGCTTCGCGTCGAACAACACGGCCATGGCGCTGTCCCTCATCACCTCGGGCCTCAACGCCATCGGGTCCATCGTCAGCATGTTCTTCGTGGACAGGGCCGGCCGCCGTCGCCTGATGATCATCAGCCTCGTCGGCATCGTCCTGTGGCTCGCCGTGCTCGGCGGCACGTTCCTCGGCGCCGCGCACCACGCGCCGCCGGTCAGCGACCTGGAGACGCGGGTGTTCGCCAACCAGACGTGCCCGGAGTACAGCCCGAGCGCCCGCTGGAACTGCATGAACTGCCTCAAGGCCCAGTCCACCTGCGGCTTCTGCGCCCACGGAGGAAACAAGCTCCTCCCCGGCGCGTGCCTGGCGGCGGGCGAAGCGTCGCGGCGGACGTGCCACGCGGGGAACCGGGAGTTCTACACGGAAGGGTGCCCCAACAACTTCGGGTGGCTGGCGCTGGTGGCGCTCGGCGCGTACATCGTCTCCTACTCCCCGGGCATGGGCACCGTGCCATGGATCGTCAACTCGGAGATCTACCCGCTGCGGTTCAGGGGCGTCTGCGGCGGCATCGCGGCGGTGGCCAACTGGGTGTCCAACCTCATCGTCACGCAGACGTTCCTGAGCCTCACCAAGGCGCTGGGCACGTCGGCCACCTTCTTCCTCTTCTGCGCCGTCTCCTTCTTCGCGCTCGTCGTCGTCTTCTTCACCGTGCCGGAGACCAAGGGACTGCAGTTCGAGGAGGTGGAGAAGATGCTCGGGGAGAAGGACTACAAGCCGTGGAAGAGATACCGTCCCGACGTGTCGTCCAAAGGGCGCGACATCGGCCTCTCTGTTCCATGAAAGGAAGAAGAACAGTGTTTGGTTTCAAGTTATTTGGGTTTTAACTAGCAATAATCTGTACTCAGTTTACATGTAGAGTGGCCGTTGCCAATAGAAATTAATCAGTTGTTTCATTGTGTGACACATTTTAGAGCCTTTTCCCCTGTGCTTAGAACGTTTGATGATTTTTATATAAGTAAATTGCGTCTTGGTC]

[+] EMBL AK070476             [TCCCGGCAGCCTGGGGTTTCTCTCCCCGTTTCTGTTTCTCGGTGAGGTGAAGTTTTCCGTCTCAGCACACTGCCAGTTCTTCTTCTTGTTCTTCCTACTCGTGGCGCCGCGGCGTCCTCACGGATCGCAAGGTCGGGAATTATCTGGGGTTCTCGGGGTTTGTGGCTCCTTTCCGGTGAAAGGATTCTTTTTTAGCGGGAGATCGGTTGAGTCGGTTTCTTCTGTAGATCTTATCGTTGAGATTTCGTTGTTTATGTTAGGCGAGTCGGGGTGAGACTTATCCGCGTTCCTCCCTGCGATGAAACACGCGATTTTGGATTGTCGTTACGTTTAGGGATTGTGGTTTTAAGGCTGTTCTTCCGTTGTAAATGTTGGTTGCGCCATCCTATAAAAGAAAGGGACTCCTGTCGAGAAACACACCATGCTTCTTCTGTCCTGAAGGTTTGGAAAGGCACATTCTGAGGAGATTTTTCTGTCCTACATCGTAGCCCTTGAATGCAATGGAAGGGGGTGCAACTCTAGCTGATAAGGCTGAATTTAAGGAATGTCTGCGGCTGACCTGGAGCCAGCCTTACATTCTTCAGCTTGTTTTCTCTGCCGGCATCGGTGGTCTTCTTTTCGGATATGATACAGGTGTCATATCTGGAGCACTTCTGTATATTCGAGATGATTTTACTGCGGTCGAAAAGAGCACTGTACTTAGGGAAACGATAGTGAGTATGGCTGTAGCTGGAGCCATAGTTGGAGCAGGATTTGGTGGCTGGATGAACGACAAGTTTGGAAGGAAGCCTTCCATCTTGATCGCCGATTCCCTGTTCCTCGCAGGTGCCTTGATCATGGCCCTTGCCCCAACACCGTTTGTCATCATTATTGGGAGGATCTTTGTTGGTCTTGGGGTTGGAATGGCTTCCATGACAGCACCTTTGTACATTTCTGAAGCCTCTCCAGCTAGAATCAGAGGTGCACTTGTGAGCACAAATGGACTTCTTATTACCGGAGGGCAGTTCATGGCATACCTCATTAATCTGGCCTTCACTAAGGTAAAGGGAACATGGAGGTGGATGCTTGGCATTGCAGGTCTTCCTGCTTTTATTCAGTTCATATTGATGTGTATGCTACCTGAATCACCAAGGTGGCTATACAGACAGGATAGGAAAGAGGAGGCTGAAGCCATATTAAGGAAGATTTACCCCGCGGCTGAGGTTGAAGAAGAGATCGATTCGATGCGCCGATCAATTGAACATGAGAAACAACTGGAGGGCTCCATCGGCGAGCAGAGTCTGGTTGGCAAGCTGACGAAGGCACTGAGCAGCAAGGTCGTCCGCCGTGGGCTCATGGCCGGCGTCATCGCGCAGGTCGCCCAGCAGTTCGTCGGCATCAACACCGTCATGTACTACAGCCCGACGATCGTCCAGCTGGCCGGCTTCGCGTCGAACAACACGGCCATGGCGCTGTCCCTCATCACCTCGGGCCTCAACGCCATCGGGTCCATCGTCAGCATGTTCTTCGTGGACAGGGCCGGCCGCCGTCGCCTGATGATCATCAGCCTCGTCGGCATCGTCCTGTGGCTCGCCGTGCTCGGCGGCACGTTCCTCGGCGCCGCGCACCACGCGCCGCCGGTCAGCGACCTGGAGACGCGGGTGTTCGCCAACCAGACGTGCCCGGAGTACAGCCCGAGCGCCCGCTGGAACTGCATGAACTGCCTCAAGGCCCAGTCCACCTGCGGCTTCTGCGCCCACGGAGGAAACAAGCTCCTCCCCGGCGCGTGCCTGGCGGCGGGCGAAGCGTCGCGGCGGACGTGCCACGCGGGGAACCGGGAGTTCTACACGGAAGGGTGCCCCAACAACTTCGGGTGGCTGGCGCTGGTGGCGCTCGGCGCGTACATCGTCTCCTACTCCCCGGGCATGGGCACCGTGCCATGGATCGTCAACTCGGAGATCTACCCGCTGCGGTTCAGGGGCGTCTGCGGCGGCATCGCGGCGGTGGCCAACTGGGTGTCCAACCTCATCGTCACGCAGACGTTCCTGAGCCTCACCAAGGCGCTGGGCACGTCGGCCACCTTCTTCCTCTTCTGCGCCGTCTCCTTCTTCGCGCTCGTCGTCGTCTTCTTCACCGTGCCGGAGACCAAGGGACTGCAGTTCGAGGAGGTGGAGAAGATGCTCGGGGAGAAGGACTACAAGCCGTGGAAGAGATACCGTCCCGACGTGTCGTCCAAAGGGCGCGACATCGGCCTCTCTGTTCCATGAAAGGAAGAAGAACAGTGTTTGGTTTCAAGTTATTTGGGTTTTAACTAGCAATAATCTGTACTCAGTTTACATGTAGAGTGGCCGTTGCCAATAGAAATTAATCAGTTGTTTCATTGTGTGACACATTTTAGAGCCTTTTCCCCTGTGCTTAGAACGTTTGATGATTTTTATATAAGTAAATTGCGTCTTGGTC]


>consensus_2542#0 TCCCGGCAGCCTGGGGTTTCTCTCCCCGTTTCTGTTTCTCGGTGAGGTGAAGTTTTCCGT CTCAGCACACTGCCAGTTCTTCTTCTTGTTCTTCCTACTCGTGGCGCCGCGGCGTCCTCA CGGATCGCAAGGTCGGGAATTATCTGGGGTTCTCGGGGTTTGTGGCTCCTTTCCGGTGAA AGGATTCTTTTTTAGCGGGAGATCGGTTGAGTCGGTTTCTTCTGTAGATCTTATCGTTGA GATTTCGTTGTTTATGTTAGGCGAGTCGGGGTGAGACTTATCCGCGTTCCTCCCTGCGAT GAAACACGCGATTTTGGATTGTCGTTACGTTTAGGGATTGTGGTTTTAAGGCTGTTCTTC CGTTGTAAATGTTGGTTGCGCCATCCTATAAAAGAAAGGGACTCCTGTCGAGAAACACAC CATGCTTCTTCTGTCCTGAAGGTTTGGAAAGGCACATTCTGAGGAGATTTTTCTGTCCTA CATCGTAGCCCTTGAATGCAATGGAAGGGGGTGCAACTCTAGCTGATAAGGCTGAATTTA AGGAATGTCTGCGGCTGACCTGGAGCCAGCCTTACATTCTTCAGCTTGTTTTCTCTGCCG GCATCGGTGGTCTTCTTTTCGGATATGATACAGGTGTCATATCTGGAGCACTTCTGTATA TTCGAGATGATTTTACTGCGGTCGAAAAGAGCACTGTACTTAGGGAAACGATAGTGAGTA TGGCTGTAGCTGGAGCCATAGTTGGAGCAGGATTTGGTGGCTGGATGAACGACAAGTTTG GAAGGAAGCCTTCCATCTTGATCGCCGATTCCCTGTTCCTCGCAGGTGCCTTGATCATGG CCCTTGCCCCAACACCGTTTGTCATCATTATTGGGAGGATCTTTGTTGGTCTTGGGGTTG GAATGGCTTCCATGACAGCACCTTTGTACATTTCTGAAGCCTCTCCAGCTAGAATCAGAG GTGCACTTGTGAGCACAAATGGACTTCTTATTACCGGAGGGCAGTTCATGGCATACCTCA TTAATCTGGCCTTCACTAAGGTAAAGGGAACATGGAGGTGGATGCTTGGCATTGCAGGTC TTCCTGCTTTTATTCAGTTCATATTGATGTGTATGCTACCTGAATCACCAAGGTGGCTAT ACAGACAGGATAGGAAAGAGGAGGCTGAAGCCATATTAAGGAAGATTTACCCCGCGGCTG AGGTTGAAGAAGAGATCGATTCGATGCGCCGATCAATTGAACATGAGAAACAACTGGAGG GCTCCATCGGCGAGCAGAGTCTGGTTGGCAAGCTGACGAAGGCACTGAGCAGCAAGGTCG TCCGCCGTGGGCTCATGGCCGGCGTCATCGCGCAGGTCGCCCAGCAGTTCGTCGGCATCA ACACCGTCATGTACTACAGCCCGACGATCGTCCAGCTGGCCGGCTTCGCGTCGAACAACA CGGCCATGGCGCTGTCCCTCATCACCTCGGGCCTCAACGCCATCGGGTCCATCGTCAGCA TGTTCTTCGTGGACAGGGCCGGCCGCCGTCGCCTGATGATCATCAGCCTCGTCGGCATCG TCCTGTGGCTCGCCGTGCTCGGCGGCACGTTCCTCGGCGCCGCGCACCACGCGCCGCCGG TCAGCGACCTGGAGACGCGGGTGTTCGCCAACCAGACGTGCCCGGAGTACAGCCCGAGCG CCCGCTGGAACTGCATGAACTGCCTCAAGGCCCAGTCCACCTGCGGCTTCTGCGCCCACG GAGGAAACAAGCTCCTCCCCGGCGCGTGCCTGGCGGCGGGCGAAGCGTCGCGGCGGACGT GCCACGCGGGGAACCGGGAGTTCTACACGGAAGGGTGCCCCAACAACTTCGGGTGGCTGG CGCTGGTGGCGCTCGGCGCGTACATCGTCTCCTACTCCCCGGGCATGGGCACCGTGCCAT GGATCGTCAACTCGGAGATCTACCCGCTGCGGTTCAGGGGCGTCTGCGGCGGCATCGCGG CGGTGGCCAACTGGGTGTCCAACCTCATCGTCACGCAGACGTTCCTGAGCCTCACCAAGG CGCTGGGCACGTCGGCCACCTTCTTCCTCTTCTGCGCCGTCTCCTTCTTCGCGCTCGTCG TCGTCTTCTTCACCGTGCCGGAGACCAAGGGACTGCAGTTCGAGGAGGTGGAGAAGATGC TCGGGGAGAAGGACTACAAGCCGTGGAAGAGATACCGTCCCGACGTGTCGTCCAAAGGGC GCGACATCGGCCTCTCTGTTCCATGAAAGGAAGAAGAACAGTGTTTGGTTTCAAGTTATT TGGGTTTTAACTAGCAATAATCTGTACTCAGTTTACATGTAGAGTGGCCGTTGCCAATAG AAATTAATCAGTTGTTTCATTGTGTGACACATTTTAGAGCCTTTTCCCCTGTGCTTAGAA CGTTTGATGATTTTTATATAAGTAAATTGCGTCTTGGTC



consensusID : consensus_2542#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 2138
fasta sequence
                              [CGTCGTCCGTGGTGGAGGCGCGGTGGGGTGGGGAAGGAGTGTGTTTCGTGTGCTGTGCTGGGCTCGCGCGGCTCTCGTCCCGGGCTCCCGGCAGCCTGGGGTTTCTCTCCCCGTTTCTGTTTCTCGGTGAGGACAATTTATGTTTCATTCCTGCGTGACCAATCTAATCTGAACCTACGTTGGGTGCGCAAAAGCCCTTGAATGCAATGGAAGGGGGTGCAACTCTAGCTGATAAGGCTGAATTTAAGGAATGTCTGCGGCTGACCTGGAGCCAGCCTTACATTCTTCAGCTTGTTTTCTCTGCCGGCATCGGTGGTCTTCTTTTCGGATATGATACAGGTGTCATATCTGGAGCACTTCTGTATATTCGAGATGATTTTACTGCGGTCGAAAAGAGCACTGTACTTAGGGAAACGATAGTGAGTATGGCTGTAGCTGGAGCCATAGTTGGAGCAGGATTTGGTGGCTGGATGAACGACAAGTTTGGAAGGAAGCCTTCCATCTTGATCGCCGATTCCCTGTTCCTCGCAGGTGCCTTGATCATGGCCCTTGCCCCAACACCGTTTGTCATCATTATTGGGAGGATCTTTGTTGGTCTTGGGGTTGGAATGGCTTCCATGACAGCACCTTTGTACATTTCTGAAGCCTCTCCAGCTAGAATCAGAGGTGCACTTGTGAGCACAAATGGACTTCTTATTACCGGAGGGCAGTTCATGGCATACCTCATTAATCTGGCCTTCACTAAGGTAAAGGGAACATGGAGGTGGATGCTTGGCATTGCAGGTCTTCCTGCTTTTATTCAGTTCATATTGATGTGTATGCTACCTGAATCACCAAGGTGGCTATACAGACAGGATAGGAAAGAGGAGGCTGAAGCCATATTAAGGAAGATTTACCCCGCGGCTGAGGTTGAAGAAGAGATCGATTCGATGCGCCGATCAATTGAACATGAGAAACAACTGGAGGGCTCCATCGGCGAGCAGAGTCTGGTTGGCAAGCTGACGAAGGCACTGAGCAGCAAGGTCGTCCGCCGTGGGCTCATGGCCGGCGTCATCGCGCAGGTCGCCCAGCAGTTCGTCGGCATCAACACCGTCATGTACTACAGCCCGACGATCGTCCAGCTGGCCGGCTTCGCGTCGAACAACACGGCCATGGCGCTGTCCCTCATCACCTCGGACCTCAACGCCATCGGGTCCATCGTCAGCATGTTCTTCGTGGACAGGGCCGGCCGCCGTCGCCTGATGATCATCAGCCTCGTCGGCATCGTCCTGTGGCTCGCCGTGCTCGGCGGCACGTTCCTCGGCGCCGCGCACCACGCGCCGCCGGTCAGCGACCTGGAGACGCGGGTGTTCGCCAACCAGACGTGCCCGGAGTACAGCCCGAGCGCCCGCTGGAACTGCATGAACTGCCTCAAGGCCCAGTCCACCTGCGGCTTCTGCGCCCACGGAGGAAACAAGCTCCTCCCCGGCGCGTGCCTGGCGGCGGGCGAAGCGTCGCGGCGGACGTGCCACGCGGGGAACCGGGAGTTCTACACGGAAGGGTGCCCCAACAACTTCGGGTGGCTGGCGCTGGTGGCGCTCGGCGCGTACATCGTCTCCTACTCCCCGGGCATGGGCACCGTGCCATGGATCGTCAACTCGGAGATCTACCCGCTGCGGTTCAGGGGCGTCTGCGGCGGCATCGCGGCGGTGGCCAACTGGGTGTCCAACCTCATCGTCACGCAGACGTTCCTGAGCCTCACCAAGGCGCTGGGCACGTCGGCCACCTTCTTCCTCTTCTGCGCCGTCTCCTTCTTCGCGCTCGTCGTCGTCTTCTTCACCGTGCCGGAGACCAAGGGACTGCAGTTCGAGGAGGTGGAGAAGATGCTCGGGGAGAAGGACTACAAGCCGTGGAAGAGATACCGTCCCGACGTGTCGTCCAAAGGGCGCGACATCGGCCTCTCTGTTCCATGAAAGGAAGAAGAACAGTGTTTGGTTTCAAGTTATTTGGGTTTTAACTAGCAATAATCTGTACTCAGTTTACATGTAGAGTGGCCGTTGCCAATAGAAATTAATCAGTTGTTTCATTGTGTGACACATTTTAGAGCCTTTTCCCCTGTGCTTAGAACGTTTGATGATTTTTATATAAGTAAATTGCGT]

[+] EMBL AK072430             [CGTCGTCCGTGGTGGAGGCGCGGTGGGGTGGGGAAGGAGTGTGTTTCGTGTGCTGTGCTGGGCTCGCGCGGCTCTCGTCCCGGGCTCCCGGCAGCCTGGGGTTTCTCTCCCCGTTTCTGTTTCTCGGTGAGGACAATTTATGTTTCATTCCTGCGTGACCAATCTAATCTGAACCTACGTTGGGTGCGCAAAAGCCCTTGAATGCAATGGAAGGGGGTGCAACTCTAGCTGATAAGGCTGAATTTAAGGAATGTCTGCGGCTGACCTGGAGCCAGCCTTACATTCTTCAGCTTGTTTTCTCTGCCGGCATCGGTGGTCTTCTTTTCGGATATGATACAGGTGTCATATCTGGAGCACTTCTGTATATTCGAGATGATTTTACTGCGGTCGAAAAGAGCACTGTACTTAGGGAAACGATAGTGAGTATGGCTGTAGCTGGAGCCATAGTTGGAGCAGGATTTGGTGGCTGGATGAACGACAAGTTTGGAAGGAAGCCTTCCATCTTGATCGCCGATTCCCTGTTCCTCGCAGGTGCCTTGATCATGGCCCTTGCCCCAACACCGTTTGTCATCATTATTGGGAGGATCTTTGTTGGTCTTGGGGTTGGAATGGCTTCCATGACAGCACCTTTGTACATTTCTGAAGCCTCTCCAGCTAGAATCAGAGGTGCACTTGTGAGCACAAATGGACTTCTTATTACCGGAGGGCAGTTCATGGCATACCTCATTAATCTGGCCTTCACTAAGGTAAAGGGAACATGGAGGTGGATGCTTGGCATTGCAGGTCTTCCTGCTTTTATTCAGTTCATATTGATGTGTATGCTACCTGAATCACCAAGGTGGCTATACAGACAGGATAGGAAAGAGGAGGCTGAAGCCATATTAAGGAAGATTTACCCCGCGGCTGAGGTTGAAGAAGAGATCGATTCGATGCGCCGATCAATTGAACATGAGAAACAACTGGAGGGCTCCATCGGCGAGCAGAGTCTGGTTGGCAAGCTGACGAAGGCACTGAGCAGCAAGGTCGTCCGCCGTGGGCTCATGGCCGGCGTCATCGCGCAGGTCGCCCAGCAGTTCGTCGGCATCAACACCGTCATGTACTACAGCCCGACGATCGTCCAGCTGGCCGGCTTCGCGTCGAACAACACGGCCATGGCGCTGTCCCTCATCACCTCGGACCTCAACGCCATCGGGTCCATCGTCAGCATGTTCTTCGTGGACAGGGCCGGCCGCCGTCGCCTGATGATCATCAGCCTCGTCGGCATCGTCCTGTGGCTCGCCGTGCTCGGCGGCACGTTCCTCGGCGCCGCGCACCACGCGCCGCCGGTCAGCGACCTGGAGACGCGGGTGTTCGCCAACCAGACGTGCCCGGAGTACAGCCCGAGCGCCCGCTGGAACTGCATGAACTGCCTCAAGGCCCAGTCCACCTGCGGCTTCTGCGCCCACGGAGGAAACAAGCTCCTCCCCGGCGCGTGCCTGGCGGCGGGCGAAGCGTCGCGGCGGACGTGCCACGCGGGGAACCGGGAGTTCTACACGGAAGGGTGCCCCAACAACTTCGGGTGGCTGGCGCTGGTGGCGCTCGGCGCGTACATCGTCTCCTACTCCCCGGGCATGGGCACCGTGCCATGGATCGTCAACTCGGAGATCTACCCGCTGCGGTTCAGGGGCGTCTGCGGCGGCATCGCGGCGGTGGCCAACTGGGTGTCCAACCTCATCGTCACGCAGACGTTCCTGAGCCTCACCAAGGCGCTGGGCACGTCGGCCACCTTCTTCCTCTTCTGCGCCGTCTCCTTCTTCGCGCTCGTCGTCGTCTTCTTCACCGTGCCGGAGACCAAGGGACTGCAGTTCGAGGAGGTGGAGAAGATGCTCGGGGAGAAGGACTACAAGCCGTGGAAGAGATACCGTCCCGACGTGTCGTCCAAAGGGCGCGACATCGGCCTCTCTGTTCCATGAAAGGAAGAAGAACAGTGTTTGGTTTCAAGTTATTTGGGTTTTAACTAGCAATAATCTGTACTCAGTTTACATGTAGAGTGGCCGTTGCCAATAGAAATTAATCAGTTGTTTCATTGTGTGACACATTTTAGAGCCTTTTCCCCTGTGCTTAGAACGTTTGATGATTTTTATATAAGTAAATTGCGT]


>consensus_2542#1 CGTCGTCCGTGGTGGAGGCGCGGTGGGGTGGGGAAGGAGTGTGTTTCGTGTGCTGTGCTG GGCTCGCGCGGCTCTCGTCCCGGGCTCCCGGCAGCCTGGGGTTTCTCTCCCCGTTTCTGT TTCTCGGTGAGGACAATTTATGTTTCATTCCTGCGTGACCAATCTAATCTGAACCTACGT TGGGTGCGCAAAAGCCCTTGAATGCAATGGAAGGGGGTGCAACTCTAGCTGATAAGGCTG AATTTAAGGAATGTCTGCGGCTGACCTGGAGCCAGCCTTACATTCTTCAGCTTGTTTTCT CTGCCGGCATCGGTGGTCTTCTTTTCGGATATGATACAGGTGTCATATCTGGAGCACTTC TGTATATTCGAGATGATTTTACTGCGGTCGAAAAGAGCACTGTACTTAGGGAAACGATAG TGAGTATGGCTGTAGCTGGAGCCATAGTTGGAGCAGGATTTGGTGGCTGGATGAACGACA AGTTTGGAAGGAAGCCTTCCATCTTGATCGCCGATTCCCTGTTCCTCGCAGGTGCCTTGA TCATGGCCCTTGCCCCAACACCGTTTGTCATCATTATTGGGAGGATCTTTGTTGGTCTTG GGGTTGGAATGGCTTCCATGACAGCACCTTTGTACATTTCTGAAGCCTCTCCAGCTAGAA TCAGAGGTGCACTTGTGAGCACAAATGGACTTCTTATTACCGGAGGGCAGTTCATGGCAT ACCTCATTAATCTGGCCTTCACTAAGGTAAAGGGAACATGGAGGTGGATGCTTGGCATTG CAGGTCTTCCTGCTTTTATTCAGTTCATATTGATGTGTATGCTACCTGAATCACCAAGGT GGCTATACAGACAGGATAGGAAAGAGGAGGCTGAAGCCATATTAAGGAAGATTTACCCCG CGGCTGAGGTTGAAGAAGAGATCGATTCGATGCGCCGATCAATTGAACATGAGAAACAAC TGGAGGGCTCCATCGGCGAGCAGAGTCTGGTTGGCAAGCTGACGAAGGCACTGAGCAGCA AGGTCGTCCGCCGTGGGCTCATGGCCGGCGTCATCGCGCAGGTCGCCCAGCAGTTCGTCG GCATCAACACCGTCATGTACTACAGCCCGACGATCGTCCAGCTGGCCGGCTTCGCGTCGA ACAACACGGCCATGGCGCTGTCCCTCATCACCTCGGACCTCAACGCCATCGGGTCCATCG TCAGCATGTTCTTCGTGGACAGGGCCGGCCGCCGTCGCCTGATGATCATCAGCCTCGTCG GCATCGTCCTGTGGCTCGCCGTGCTCGGCGGCACGTTCCTCGGCGCCGCGCACCACGCGC CGCCGGTCAGCGACCTGGAGACGCGGGTGTTCGCCAACCAGACGTGCCCGGAGTACAGCC CGAGCGCCCGCTGGAACTGCATGAACTGCCTCAAGGCCCAGTCCACCTGCGGCTTCTGCG CCCACGGAGGAAACAAGCTCCTCCCCGGCGCGTGCCTGGCGGCGGGCGAAGCGTCGCGGC GGACGTGCCACGCGGGGAACCGGGAGTTCTACACGGAAGGGTGCCCCAACAACTTCGGGT GGCTGGCGCTGGTGGCGCTCGGCGCGTACATCGTCTCCTACTCCCCGGGCATGGGCACCG TGCCATGGATCGTCAACTCGGAGATCTACCCGCTGCGGTTCAGGGGCGTCTGCGGCGGCA TCGCGGCGGTGGCCAACTGGGTGTCCAACCTCATCGTCACGCAGACGTTCCTGAGCCTCA CCAAGGCGCTGGGCACGTCGGCCACCTTCTTCCTCTTCTGCGCCGTCTCCTTCTTCGCGC TCGTCGTCGTCTTCTTCACCGTGCCGGAGACCAAGGGACTGCAGTTCGAGGAGGTGGAGA AGATGCTCGGGGAGAAGGACTACAAGCCGTGGAAGAGATACCGTCCCGACGTGTCGTCCA AAGGGCGCGACATCGGCCTCTCTGTTCCATGAAAGGAAGAAGAACAGTGTTTGGTTTCAA GTTATTTGGGTTTTAACTAGCAATAATCTGTACTCAGTTTACATGTAGAGTGGCCGTTGC CAATAGAAATTAATCAGTTGTTTCATTGTGTGACACATTTTAGAGCCTTTTCCCCTGTGC TTAGAACGTTTGATGATTTTTATATAAGTAAATTGCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2542#0      TCCCGGCAGCCTGGGGTTTCTCTCCCCGTTTCTGTTTCTCGGTGAGGTGAAGTTTTCCGT 60
consensus_2542#1      ------------------------------------------------------------
                                                                                  

consensus_2542#0      CTCAGCACACTGCCAGTTCTTCTTCTTGTTCTTCCTACTCGTGGCGCCGCGGCGTCCTCA 120
consensus_2542#1      ------------------------------------------------------------
                                                                                  

consensus_2542#0      CGGATCGCAAGGTCGGGAATTATCTGGGGTTCTCGGGGTTTGTGGCTCCTTTCCGGTGAA 180
consensus_2542#1      ------------------------------------------------------------
                                                                                  

consensus_2542#0      AGGATTCTTTTTTAGCGGGAGATCGGTTGAGTCGGTTTCTTCTGTAGATCTTATCGTTGA 240
consensus_2542#1      ------------------------------------------------------------
                                                                                  

consensus_2542#0      GATTTCGTTGTTTATGTTAGGCGAGTCGGGGTGAGACTTATCCGCGTTCCTCCCTGCGAT 300
consensus_2542#1      -----------------------------------CGTCGTCCGTGGTGGAGGC-GCGGT 24
                                                           *  **** * *     * *** *

consensus_2542#0      GAAACACGCGATTTTGGATTGTCGTTACGTTTAGGG-ATTGTGGTTTTAAGGCTGTTCTT 359
consensus_2542#1      GGGGTGGGGAA----GGAGTGT-GTTTCGTGTGCTGTGCTGGGCTCGCGCGGCTCTCGTC 79
                      *      *  *    *** *** *** *** *   *   ** * *     **** *  * 

consensus_2542#0      CCGTTGTAAATGTTGGTTGCGCCATCCTATAAAAGAAAGGGACTCCTGTCGAGAAACACA 419
consensus_2542#1      CCGGGCTCCCGGCAGCCTGGGGT-TTCTCTCCCCGTTTCTGTTTCTCGGTGAGGA-CAAT 137
                      ***   *    *  *  ** *   * ** *    *     *  **  *  *** * **  

consensus_2542#0      CCATGCTTCTTCTGTCCTGAAGGTTTGGAAAGGCACATTCTGAGGAGATTTTTCTGTCCT 479
consensus_2542#1      TTATGTTTCAT---TCCTGCGTGACCA-----ATCTAATCTGA----ACCTACGTTGGGT 185
                        *** *** *   *****   *             * *****    *  *   *    *

consensus_2542#0      ACATCGTAGCCCTTGAATGCAATGGAAGGGGGTGCAACTCTAGCTGATAAGGCTGAATTT 539
consensus_2542#1      GCGCAAAAGCCCTTGAATGCAATGGAAGGGGGTGCAACTCTAGCTGATAAGGCTGAATTT 245
                       *     *****************************************************

consensus_2542#0      AAGGAATGTCTGCGGCTGACCTGGAGCCAGCCTTACATTCTTCAGCTTGTTTTCTCTGCC 599
consensus_2542#1      AAGGAATGTCTGCGGCTGACCTGGAGCCAGCCTTACATTCTTCAGCTTGTTTTCTCTGCC 305
                      ************************************************************

consensus_2542#0      GGCATCGGTGGTCTTCTTTTCGGATATGATACAGGTGTCATATCTGGAGCACTTCTGTAT 659
consensus_2542#1      GGCATCGGTGGTCTTCTTTTCGGATATGATACAGGTGTCATATCTGGAGCACTTCTGTAT 365
                      ************************************************************

consensus_2542#0      ATTCGAGATGATTTTACTGCGGTCGAAAAGAGCACTGTACTTAGGGAAACGATAGTGAGT 719
consensus_2542#1      ATTCGAGATGATTTTACTGCGGTCGAAAAGAGCACTGTACTTAGGGAAACGATAGTGAGT 425
                      ************************************************************

consensus_2542#0      ATGGCTGTAGCTGGAGCCATAGTTGGAGCAGGATTTGGTGGCTGGATGAACGACAAGTTT 779
consensus_2542#1      ATGGCTGTAGCTGGAGCCATAGTTGGAGCAGGATTTGGTGGCTGGATGAACGACAAGTTT 485
                      ************************************************************

consensus_2542#0      GGAAGGAAGCCTTCCATCTTGATCGCCGATTCCCTGTTCCTCGCAGGTGCCTTGATCATG 839
consensus_2542#1      GGAAGGAAGCCTTCCATCTTGATCGCCGATTCCCTGTTCCTCGCAGGTGCCTTGATCATG 545
                      ************************************************************

consensus_2542#0      GCCCTTGCCCCAACACCGTTTGTCATCATTATTGGGAGGATCTTTGTTGGTCTTGGGGTT 899
consensus_2542#1      GCCCTTGCCCCAACACCGTTTGTCATCATTATTGGGAGGATCTTTGTTGGTCTTGGGGTT 605
                      ************************************************************

consensus_2542#0      GGAATGGCTTCCATGACAGCACCTTTGTACATTTCTGAAGCCTCTCCAGCTAGAATCAGA 959
consensus_2542#1      GGAATGGCTTCCATGACAGCACCTTTGTACATTTCTGAAGCCTCTCCAGCTAGAATCAGA 665
                      ************************************************************

consensus_2542#0      GGTGCACTTGTGAGCACAAATGGACTTCTTATTACCGGAGGGCAGTTCATGGCATACCTC 1019
consensus_2542#1      GGTGCACTTGTGAGCACAAATGGACTTCTTATTACCGGAGGGCAGTTCATGGCATACCTC 725
                      ************************************************************

consensus_2542#0      ATTAATCTGGCCTTCACTAAGGTAAAGGGAACATGGAGGTGGATGCTTGGCATTGCAGGT 1079
consensus_2542#1      ATTAATCTGGCCTTCACTAAGGTAAAGGGAACATGGAGGTGGATGCTTGGCATTGCAGGT 785
                      ************************************************************

consensus_2542#0      CTTCCTGCTTTTATTCAGTTCATATTGATGTGTATGCTACCTGAATCACCAAGGTGGCTA 1139
consensus_2542#1      CTTCCTGCTTTTATTCAGTTCATATTGATGTGTATGCTACCTGAATCACCAAGGTGGCTA 845
                      ************************************************************

consensus_2542#0      TACAGACAGGATAGGAAAGAGGAGGCTGAAGCCATATTAAGGAAGATTTACCCCGCGGCT 1199
consensus_2542#1      TACAGACAGGATAGGAAAGAGGAGGCTGAAGCCATATTAAGGAAGATTTACCCCGCGGCT 905
                      ************************************************************

consensus_2542#0      GAGGTTGAAGAAGAGATCGATTCGATGCGCCGATCAATTGAACATGAGAAACAACTGGAG 1259
consensus_2542#1      GAGGTTGAAGAAGAGATCGATTCGATGCGCCGATCAATTGAACATGAGAAACAACTGGAG 965
                      ************************************************************

consensus_2542#0      GGCTCCATCGGCGAGCAGAGTCTGGTTGGCAAGCTGACGAAGGCACTGAGCAGCAAGGTC 1319
consensus_2542#1      GGCTCCATCGGCGAGCAGAGTCTGGTTGGCAAGCTGACGAAGGCACTGAGCAGCAAGGTC 1025
                      ************************************************************

consensus_2542#0      GTCCGCCGTGGGCTCATGGCCGGCGTCATCGCGCAGGTCGCCCAGCAGTTCGTCGGCATC 1379
consensus_2542#1      GTCCGCCGTGGGCTCATGGCCGGCGTCATCGCGCAGGTCGCCCAGCAGTTCGTCGGCATC 1085
                      ************************************************************

consensus_2542#0      AACACCGTCATGTACTACAGCCCGACGATCGTCCAGCTGGCCGGCTTCGCGTCGAACAAC 1439
consensus_2542#1      AACACCGTCATGTACTACAGCCCGACGATCGTCCAGCTGGCCGGCTTCGCGTCGAACAAC 1145
                      ************************************************************

consensus_2542#0      ACGGCCATGGCGCTGTCCCTCATCACCTCGGGCCTCAACGCCATCGGGTCCATCGTCAGC 1499
consensus_2542#1      ACGGCCATGGCGCTGTCCCTCATCACCTCGGACCTCAACGCCATCGGGTCCATCGTCAGC 1205
                      ******************************* ****************************

consensus_2542#0      ATGTTCTTCGTGGACAGGGCCGGCCGCCGTCGCCTGATGATCATCAGCCTCGTCGGCATC 1559
consensus_2542#1      ATGTTCTTCGTGGACAGGGCCGGCCGCCGTCGCCTGATGATCATCAGCCTCGTCGGCATC 1265
                      ************************************************************

consensus_2542#0      GTCCTGTGGCTCGCCGTGCTCGGCGGCACGTTCCTCGGCGCCGCGCACCACGCGCCGCCG 1619
consensus_2542#1      GTCCTGTGGCTCGCCGTGCTCGGCGGCACGTTCCTCGGCGCCGCGCACCACGCGCCGCCG 1325
                      ************************************************************

consensus_2542#0      GTCAGCGACCTGGAGACGCGGGTGTTCGCCAACCAGACGTGCCCGGAGTACAGCCCGAGC 1679
consensus_2542#1      GTCAGCGACCTGGAGACGCGGGTGTTCGCCAACCAGACGTGCCCGGAGTACAGCCCGAGC 1385
                      ************************************************************

consensus_2542#0      GCCCGCTGGAACTGCATGAACTGCCTCAAGGCCCAGTCCACCTGCGGCTTCTGCGCCCAC 1739
consensus_2542#1      GCCCGCTGGAACTGCATGAACTGCCTCAAGGCCCAGTCCACCTGCGGCTTCTGCGCCCAC 1445
                      ************************************************************

consensus_2542#0      GGAGGAAACAAGCTCCTCCCCGGCGCGTGCCTGGCGGCGGGCGAAGCGTCGCGGCGGACG 1799
consensus_2542#1      GGAGGAAACAAGCTCCTCCCCGGCGCGTGCCTGGCGGCGGGCGAAGCGTCGCGGCGGACG 1505
                      ************************************************************

consensus_2542#0      TGCCACGCGGGGAACCGGGAGTTCTACACGGAAGGGTGCCCCAACAACTTCGGGTGGCTG 1859
consensus_2542#1      TGCCACGCGGGGAACCGGGAGTTCTACACGGAAGGGTGCCCCAACAACTTCGGGTGGCTG 1565
                      ************************************************************

consensus_2542#0      GCGCTGGTGGCGCTCGGCGCGTACATCGTCTCCTACTCCCCGGGCATGGGCACCGTGCCA 1919
consensus_2542#1      GCGCTGGTGGCGCTCGGCGCGTACATCGTCTCCTACTCCCCGGGCATGGGCACCGTGCCA 1625
                      ************************************************************

consensus_2542#0      TGGATCGTCAACTCGGAGATCTACCCGCTGCGGTTCAGGGGCGTCTGCGGCGGCATCGCG 1979
consensus_2542#1      TGGATCGTCAACTCGGAGATCTACCCGCTGCGGTTCAGGGGCGTCTGCGGCGGCATCGCG 1685
                      ************************************************************

consensus_2542#0      GCGGTGGCCAACTGGGTGTCCAACCTCATCGTCACGCAGACGTTCCTGAGCCTCACCAAG 2039
consensus_2542#1      GCGGTGGCCAACTGGGTGTCCAACCTCATCGTCACGCAGACGTTCCTGAGCCTCACCAAG 1745
                      ************************************************************

consensus_2542#0      GCGCTGGGCACGTCGGCCACCTTCTTCCTCTTCTGCGCCGTCTCCTTCTTCGCGCTCGTC 2099
consensus_2542#1      GCGCTGGGCACGTCGGCCACCTTCTTCCTCTTCTGCGCCGTCTCCTTCTTCGCGCTCGTC 1805
                      ************************************************************

consensus_2542#0      GTCGTCTTCTTCACCGTGCCGGAGACCAAGGGACTGCAGTTCGAGGAGGTGGAGAAGATG 2159
consensus_2542#1      GTCGTCTTCTTCACCGTGCCGGAGACCAAGGGACTGCAGTTCGAGGAGGTGGAGAAGATG 1865
                      ************************************************************

consensus_2542#0      CTCGGGGAGAAGGACTACAAGCCGTGGAAGAGATACCGTCCCGACGTGTCGTCCAAAGGG 2219
consensus_2542#1      CTCGGGGAGAAGGACTACAAGCCGTGGAAGAGATACCGTCCCGACGTGTCGTCCAAAGGG 1925
                      ************************************************************

consensus_2542#0      CGCGACATCGGCCTCTCTGTTCCATGAAAGGAAGAAGAACAGTGTTTGGTTTCAAGTTAT 2279
consensus_2542#1      CGCGACATCGGCCTCTCTGTTCCATGAAAGGAAGAAGAACAGTGTTTGGTTTCAAGTTAT 1985
                      ************************************************************

consensus_2542#0      TTGGGTTTTAACTAGCAATAATCTGTACTCAGTTTACATGTAGAGTGGCCGTTGCCAATA 2339
consensus_2542#1      TTGGGTTTTAACTAGCAATAATCTGTACTCAGTTTACATGTAGAGTGGCCGTTGCCAATA 2045
                      ************************************************************

consensus_2542#0      GAAATTAATCAGTTGTTTCATTGTGTGACACATTTTAGAGCCTTTTCCCCTGTGCTTAGA 2399
consensus_2542#1      GAAATTAATCAGTTGTTTCATTGTGTGACACATTTTAGAGCCTTTTCCCCTGTGCTTAGA 2105
                      ************************************************************

consensus_2542#0      ACGTTTGATGATTTTTATATAAGTAAATTGCGTCTTGGTC 2439
consensus_2542#1      ACGTTTGATGATTTTTATATAAGTAAATTGCGT------- 2138
                      *********************************       




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)