These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2556#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2249 fasta sequence [GAAGACTATCGTCGCAATTGTCAGTGTCCACACGTGGTTCAACAAATGGTTTTAATAAATATCAAGGATATGTTGCGGTCCATGGGCAAAGATATACGGTCGTTTCCTCTTCCTGGGGTCGATATGCTACACGACACGACAAATGGTGTCCCTAAGGAGATCATTGAGGAATCCATGATCAAGGTGGACCCTGAGGACACAGCTTTGTGCAACTCCCTCAACACCGAGCAAAGGGCCGCCTACGATGAGATTCTAGCTACAGTTGATCACAACGAAGGAGGCCTATTCTTCATAGATGGCCCAGGAGGCACAGGAAAAACTTTTCTATACAGGGCATTGCTCGCAACAGTTCGTGAACAAGGAAAGATTGCTATCGCGACAGCTACCTCTGGTGTTGCCGCTTCCATAATGCCCGGAGGAAGGACTGCACACTCTCGATTCAAGATACCACTAAGGATAGATGATGGGGCTATTTGTACTTTCACAAAACAAAGTGGAACAGCCAAGTTGCTACAAATGGCATCGTTGATCATTTGGGACGAAGCCTCTATGACTAAGAGGCAAGCGGTGGAGGCACTGGATAATAGTATGCGAGACATAATGGACAAGCCAAACCTTCCATTCGGTGGGAAAACAGTTGTTTGGAGGTGATTTTAGACAAGTTCTCCCCATTGTACGACATGGGTCAAGGGGTCAGATATTAGATGCATCATTGCGGAGGTCCAACTTATGGGGTTGCATGCGTCACTTGCAATTGGTACGCAACATGAGGGCACAAAACGATCCTTGGTTTGTAGAATATCTACTACGGATCGGTAATGGCACTGAAGAGATCAACGATAATGGTGATATACATCTTCCTGACAATATATGTGTGCCATACACAGGGGATGACAGTGACCTAGATAAATTGATGGAGAGTGTTTATCCAACGCTCAATGATTGCCTAGCTGATCCAAATTACATCACATCAAGAGCTATTTTATCCACACGGAACGACTGTGTGGACAACATAAATCTGAAAATGATTGACCGCTTTCAAGGGGAGGAGATGGTGTATCACAGCTTTGATAGTGCGGAAGATGATCCTCATAACTACTATCCCCCAAAATTCCTTAACACTCTTACCCCATATGGACTGCCTCCACACATGCTAAAGCTCAAAATTAATTGTCCTATCATATTGCTCAGGAATATCGACCCAGCTAATGGACTTTGTAATGGCACAAGGTTGGTGGTGCGAGGATTTCAGAAAAATGCCATTGATGTAGAAATTGTGCTAGGACAACATTCTAGGACACGAGTTCTCTTGCCTTGAATCCCACTATGCCCTTCTGATCATGAGATGTTCCCGTTCCGATTTAAAAGGAAACAATTTCCGGTCAGGCTCAGCTTTGCCATGACGATAAACAAGGCACAAGGGCAGAGCATACCAAATGTCGGCGTGTACTTACCTGAACCAGTATTCTCTCACGGTCAGCTATATGTCGCACTTTCGAGAGCCACCGCAAGAAAGAATATAAAGATCCTCGTTGTACATGACGACAATCCAAAGAAAAGGAATAGACATTCTGAGCAGAATTTGAATGAGAACAATCCGAAGAAGCATTCTGACAACCTTAAGAGTGGGACATATACAAGAAATATTGTGTATACAGAGGTCCTCACAACATAGCTGGTGTATTTGGGAAATAAGAATTGTCACTGTTCTAGAGATAGCTGGTGTATTTATATTATATGAGATTATTATGAGGAGTTCATACTCTCATGCATAAATATCGATGTGTCACATAACTTCAAAACTTTTGATACATAAGCACTTCATGATAAATTTACCTCCTCTTTCATTTTTCCTAGATAGAAACCATGAATATCGAGGTCATATTAACATTAACAGATTGGAAAGGTACTGACAAAAATGGAATTGCAACAGCACGACAATTCAATTTTCGTTTGTCCCGTTAATAACAAATTTTAACAGTTCAATTTTCGTTTGTCCTGTTTATTATTATAACAGTTGATGTTGAGGGACATGGGAGTGAATAAGACTGCTAGGAAGAAACGGAGAAAAGGAACATGCAGAAGATTCAGTTTCTAGCTAGCCTAGGATTGACTACAATGTCTCAAAATGCAAACTGGTAAGTTAGCTTCTCTTTTCCCGTTGATACCATTGTTTTTGCTACCCTACTAACTCTTAGATTTTTGCAGATTTTCACCCCTGTAGAATACTGCAGTACATGTCCACTACC] [+] EMBL AK102855 [GAAGACTATCGTCGCAATTGTCAGTGTCCACACGTGGTTCAACAAATGGTTTTAATAAATATCAAGGATATGTTGCGGTCCATGGGCAAAGATATACGGTCGTTTCCTCTTCCTGGGGTCGATATGCTACACGACACGACAAATGGTGTCCCTAAGGAGATCATTGAGGAATCCATGATCAAGGTGGACCCTGAGGACACAGCTTTGTGCAACTCCCTCAACACCGAGCAAAGGGCCGCCTACGATGAGATTCTAGCTACAGTTGATCACAACGAAGGAGGCCTATTCTTCATAGATGGCCCAGGAGGCACAGGAAAAACTTTTCTATACAGGGCATTGCTCGCAACAGTTCGTGAACAAGGAAAGATTGCTATCGCGACAGCTACCTCTGGTGTTGCCGCTTCCATAATGCCCGGAGGAAGGACTGCACACTCTCGATTCAAGATACCACTAAGGATAGATGATGGGGCTATTTGTACTTTCACAAAACAAAGTGGAACAGCCAAGTTGCTACAAATGGCATCGTTGATCATTTGGGACGAAGCCTCTATGACTAAGAGGCAAGCGGTGGAGGCACTGGATAATAGTATGCGAGACATAATGGACAAGCCAAACCTTCCATTCGGTGGGAAAACAGTTGTTTGGAGGTGATTTTAGACAAGTTCTCCCCATTGTACGACATGGGTCAAGGGGTCAGATATTAGATGCATCATTGCGGAGGTCCAACTTATGGGGTTGCATGCGTCACTTGCAATTGGTACGCAACATGAGGGCACAAAACGATCCTTGGTTTGTAGAATATCTACTACGGATCGGTAATGGCACTGAAGAGATCAACGATAATGGTGATATACATCTTCCTGACAATATATGTGTGCCATACACAGGGGATGACAGTGACCTAGATAAATTGATGGAGAGTGTTTATCCAACGCTCAATGATTGCCTAGCTGATCCAAATTACATCACATCAAGAGCTATTTTATCCACACGGAACGACTGTGTGGACAACATAAATCTGAAAATGATTGACCGCTTTCAAGGGGAGGAGATGGTGTATCACAGCTTTGATAGTGCGGAAGATGATCCTCATAACTACTATCCCCCAAAATTCCTTAACACTCTTACCCCATATGGACTGCCTCCACACATGCTAAAGCTCAAAATTAATTGTCCTATCATATTGCTCAGGAATATCGACCCAGCTAATGGACTTTGTAATGGCACAAGGTTGGTGGTGCGAGGATTTCAGAAAAATGCCATTGATGTAGAAATTGTGCTAGGACAACATTCTAGGACACGAGTTCTCTTGCCTTGAATCCCACTATGCCCTTCTGATCATGAGATGTTCCCGTTCCGATTTAAAAGGAAACAATTTCCGGTCAGGCTCAGCTTTGCCATGACGATAAACAAGGCACAAGGGCAGAGCATACCAAATGTCGGCGTGTACTTACCTGAACCAGTATTCTCTCACGGTCAGCTATATGTCGCACTTTCGAGAGCCACCGCAAGAAAGAATATAAAGATCCTCGTTGTACATGACGACAATCCAAAGAAAAGGAATAGACATTCTGAGCAGAATTTGAATGAGAACAATCCGAAGAAGCATTCTGACAACCTTAAGAGTGGGACATATACAAGAAATATTGTGTATACAGAGGTCCTCACAACATAGCTGGTGTATTTGGGAAATAAGAATTGTCACTGTTCTAGAGATAGCTGGTGTATTTATATTATATGAGATTATTATGAGGAGTTCATACTCTCATGCATAAATATCGATGTGTCACATAACTTCAAAACTTTTGATACATAAGCACTTCATGATAAATTTACCTCCTCTTTCATTTTTCCTAGATAGAAACCATGAATATCGAGGTCATATTAACATTAACAGATTGGAAAGGTACTGACAAAAATGGAATTGCAACAGCACGACAATTCAATTTTCGTTTGTCCCGTTAATAACAAATTTTAACAGTTCAATTTTCGTTTGTCCTGTTTATTATTATAACAGTTGATGTTGAGGGACATGGGAGTGAATAAGACTGCTAGGAAGAAACGGAGAAAAGGAACATGCAGAAGATTCAGTTTCTAGCTAGCCTAGGATTGACTACAATGTCTCAAAATGCAAACTGGTAAGTTAGCTTCTCTTTTCCCGTTGATACCATTGTTTTTGCTACCCTACTAACTCTTAGATTTTTGCAGATTTTCACCCCTGTAGAATACTGCAGTACATGTCCACTACC] consensusID : consensus_2556#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 689 fasta sequence [TCCNCCAAAATTCCTTAACACTCTTACCCCATATGGACTGCCTCCACACATGCTAAAGCTCAAAATTAATTGTCCTATCATATTGCTCAGGAATATCGACCCAGCTAATGGACTTTGTAATGGCACAAGGTTGGTGGTGCGAGGATTTCAGAAAAATGCCATTGATGTAGAAATTGTGCTAGGACAACATTCTAGGACACGAGTTCTCTTGCCTTGAATCCCACTATGCCCTTCTGATCATGAGATGTTCCCGTTCCGATTTAAAAGGAAACAATTTCCGGTCAGGCTCAGCTTTGCCATGACGATAAACAAGGCACAAGGGCAGAGCATACCAAATGTCGGCGTGTACTTACCTGAACCAGTATTCTCTCACGGTCAGCTATATGTCGCACTTTCGAGAGCCCCCGCAAGAAAGAATATAAAGATCCTCGTTGTACATGACGCCAATCCAAAGAAAAGGAATAGCCATTTTGAGCAGAATTTGAATGAGAACAATTCGAAGAAGCATTCTGACACCATTAAGAGTGGGACATATCCAAGAAATATTGTGTATACAGAGGTCCTCACAACATAGCTGGTGTATTTTTGGAAATAAGAATTGTCACTGTTCTAGAGATAGCTGGTGTATTTATATTATATGAGATTATTATGAGGAGTTCATACTCTCATGCATAAAAAAAAAAAAAAAA] [-] EMBL CA762947 [TCCNCCAAAATTCCTTAACACTCTTACCCCATATGGACTGCCTCCACACATGCTAAAGCTCAAAATTAATTGTCCTATCATATTGCTCAGGAATATCGACCCAGCTAATGGACTTTGTAATGGCACAAGGTTGGTGGTGCGAGGATTTCAGAAAAATGCCATTGATGTAGAAATTGTGCTAGGACAACATTCTAGGACACGAGTTCTCTTGCCTTGAATCCCACTATGCCCTTCTGATCATGAGATGTTCCCGTTCCGATTTAAAAGGAAACAATTTCCGGTCAGGCTCAGCTTTGCCATGACGATAAACAAGGCACAAGGGCAGAGCATACCAAATGTCGGCGTGTACTTACCTGAACCAGTATTCTCTCACGGTCAGCTATATGTCGCACTTTCGAGAGCCCCCGCAAGAAAGAATATAAAGATCCTCGTTGTACATGACGCCAATCCAAAGAAAAGGAATAGCCATTTTGAGCAGAATTTGAATGAGAACAATTCGAAGAAGCATTCTGACACCATTAAGAGTGGGACATATCCAAGAAATATTGTGTATACAGAGGTCCTCACAACATAGCTGGTGTATTTTTGGAAATAAGAATTGTCACTGTTCTAGAGATAGCTGGTGTATTTATATTATATGAGATTATTATGAGGAGTTCATACTCTCATGCATAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2556#0 GAAGACTATCGTCGCAATTGTCAGTGTCCACACGTGGTTCAACAAATGGTTTTAATAAAT 60 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 ATCAAGGATATGTTGCGGTCCATGGGCAAAGATATACGGTCGTTTCCTCTTCCTGGGGTC 120 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 GATATGCTACACGACACGACAAATGGTGTCCCTAAGGAGATCATTGAGGAATCCATGATC 180 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 AAGGTGGACCCTGAGGACACAGCTTTGTGCAACTCCCTCAACACCGAGCAAAGGGCCGCC 240 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 TACGATGAGATTCTAGCTACAGTTGATCACAACGAAGGAGGCCTATTCTTCATAGATGGC 300 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 CCAGGAGGCACAGGAAAAACTTTTCTATACAGGGCATTGCTCGCAACAGTTCGTGAACAA 360 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 GGAAAGATTGCTATCGCGACAGCTACCTCTGGTGTTGCCGCTTCCATAATGCCCGGAGGA 420 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 AGGACTGCACACTCTCGATTCAAGATACCACTAAGGATAGATGATGGGGCTATTTGTACT 480 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 TTCACAAAACAAAGTGGAACAGCCAAGTTGCTACAAATGGCATCGTTGATCATTTGGGAC 540 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 GAAGCCTCTATGACTAAGAGGCAAGCGGTGGAGGCACTGGATAATAGTATGCGAGACATA 600 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 ATGGACAAGCCAAACCTTCCATTCGGTGGGAAAACAGTTGTTTGGAGGTGATTTTAGACA 660 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 AGTTCTCCCCATTGTACGACATGGGTCAAGGGGTCAGATATTAGATGCATCATTGCGGAG 720 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 GTCCAACTTATGGGGTTGCATGCGTCACTTGCAATTGGTACGCAACATGAGGGCACAAAA 780 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 CGATCCTTGGTTTGTAGAATATCTACTACGGATCGGTAATGGCACTGAAGAGATCAACGA 840 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 TAATGGTGATATACATCTTCCTGACAATATATGTGTGCCATACACAGGGGATGACAGTGA 900 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 CCTAGATAAATTGATGGAGAGTGTTTATCCAACGCTCAATGATTGCCTAGCTGATCCAAA 960 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 TTACATCACATCAAGAGCTATTTTATCCACACGGAACGACTGTGTGGACAACATAAATCT 1020 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 GAAAATGATTGACCGCTTTCAAGGGGAGGAGATGGTGTATCACAGCTTTGATAGTGCGGA 1080 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 AGATGATCCTCATAACTACTATCCCCCAAAATTCCTTAACACTCTTACCCCATATGGACT 1140 consensus_2556#1 ---------------------TCCNCCAAAATTCCTTAACACTCTTACCCCATATGGACT 39 *** *********************************** consensus_2556#0 GCCTCCACACATGCTAAAGCTCAAAATTAATTGTCCTATCATATTGCTCAGGAATATCGA 1200 consensus_2556#1 GCCTCCACACATGCTAAAGCTCAAAATTAATTGTCCTATCATATTGCTCAGGAATATCGA 99 ************************************************************ consensus_2556#0 CCCAGCTAATGGACTTTGTAATGGCACAAGGTTGGTGGTGCGAGGATTTCAGAAAAATGC 1260 consensus_2556#1 CCCAGCTAATGGACTTTGTAATGGCACAAGGTTGGTGGTGCGAGGATTTCAGAAAAATGC 159 ************************************************************ consensus_2556#0 CATTGATGTAGAAATTGTGCTAGGACAACATTCTAGGACACGAGTTCTCTTGCCTTGAAT 1320 consensus_2556#1 CATTGATGTAGAAATTGTGCTAGGACAACATTCTAGGACACGAGTTCTCTTGCCTTGAAT 219 ************************************************************ consensus_2556#0 CCCACTATGCCCTTCTGATCATGAGATGTTCCCGTTCCGATTTAAAAGGAAACAATTTCC 1380 consensus_2556#1 CCCACTATGCCCTTCTGATCATGAGATGTTCCCGTTCCGATTTAAAAGGAAACAATTTCC 279 ************************************************************ consensus_2556#0 GGTCAGGCTCAGCTTTGCCATGACGATAAACAAGGCACAAGGGCAGAGCATACCAAATGT 1440 consensus_2556#1 GGTCAGGCTCAGCTTTGCCATGACGATAAACAAGGCACAAGGGCAGAGCATACCAAATGT 339 ************************************************************ consensus_2556#0 CGGCGTGTACTTACCTGAACCAGTATTCTCTCACGGTCAGCTATATGTCGCACTTTCGAG 1500 consensus_2556#1 CGGCGTGTACTTACCTGAACCAGTATTCTCTCACGGTCAGCTATATGTCGCACTTTCGAG 399 ************************************************************ consensus_2556#0 AGCCACCGCAAGAAAGAATATAAAGATCCTCGTTGTACATGACGACAATCCAAAGAAAAG 1560 consensus_2556#1 AGCCCCCGCAAGAAAGAATATAAAGATCCTCGTTGTACATGACGCCAATCCAAAGAAAAG 459 **** *************************************** *************** consensus_2556#0 GAATAGACATTCTGAGCAGAATTTGAATGAGAACAATCCGAAGAAGCATTCTGACAACCT 1620 consensus_2556#1 GAATAGCCATTTTGAGCAGAATTTGAATGAGAACAATTCGAAGAAGCATTCTGACACCAT 519 ****** **** ************************* ****************** * * consensus_2556#0 TAAGAGTGGGACATATACAAGAAATATTGTGTATACAGAGGTCCTCACAACATAGCTGGT 1680 consensus_2556#1 TAAGAGTGGGACATATCCAAGAAATATTGTGTATACAGAGGTCCTCACAACATAGCTGGT 579 **************** ******************************************* consensus_2556#0 GTATTTG-GGAAATAAGAATTGTCACTGTTCTAGAGATAGCTGGTGTATTTATATTATAT 1739 consensus_2556#1 GTATTTTTGGAAATAAGAATTGTCACTGTTCTAGAGATAGCTGGTGTATTTATATTATAT 639 ****** **************************************************** consensus_2556#0 GAGATTATTATGAGGAGTTCATACTCTCATGCATAAATATCGATGTGTCACATAACTTCA 1799 consensus_2556#1 GAGATTATTATGAGGAGTTCATACTCTCATGCATAAAAAAAAAAAAAAAA---------- 689 ************************************* * * * consensus_2556#0 AAACTTTTGATACATAAGCACTTCATGATAAATTTACCTCCTCTTTCATTTTTCCTAGAT 1859 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 AGAAACCATGAATATCGAGGTCATATTAACATTAACAGATTGGAAAGGTACTGACAAAAA 1919 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 TGGAATTGCAACAGCACGACAATTCAATTTTCGTTTGTCCCGTTAATAACAAATTTTAAC 1979 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 AGTTCAATTTTCGTTTGTCCTGTTTATTATTATAACAGTTGATGTTGAGGGACATGGGAG 2039 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 TGAATAAGACTGCTAGGAAGAAACGGAGAAAAGGAACATGCAGAAGATTCAGTTTCTAGC 2099 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 TAGCCTAGGATTGACTACAATGTCTCAAAATGCAAACTGGTAAGTTAGCTTCTCTTTTCC 2159 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 CGTTGATACCATTGTTTTTGCTACCCTACTAACTCTTAGATTTTTGCAGATTTTCACCCC 2219 consensus_2556#1 ------------------------------------------------------------ consensus_2556#0 TGTAGAATACTGCAGTACATGTCCACTACC 2249 consensus_2556#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||