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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2583#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1675 fasta sequence
[TGATTACCAGTCTGTTAACTCTAGGTACATATGGAGTTATTGTCCTGGACATGGACAATTAGGTTAGTACAATCAAACAATAATTAGTCATGTATATTTCTATGCTAAAAAGGCCGAAATTATATTATATTCGCTCTCTGTTCATGTCTATTTGTTATATATTGCTGCTTGTACTCTAAAAAACTGTCACCTACCAAACAACTTTTCTATTTGCTACTATTTCAAATCCAATAATTGTGCTATATCTGCTATATAAACTCTCTGGACTTTGTGCCATGGTTGCTTCCTAATTCAAATTTATATGTTATCTACGCCAAATGACCAATATACTTGTCAAGAATAAATAGGCCATTTTCTAATATGAGATGTGTTGTTTTAGGGGTAACTTACCAATGTGCTAGCATAACTAGCTGAAGCACACTTAGATTTAGCCAGTGAAAAAACTTGGCCAGCAATTACATAACTTCTTTAGTTTGAGAGAATACTTGTTGTTTCAGCTCTCGAGTGTTCCCTGGCATATCTTGAGAGGGGGAGAGCAGCTAAAAAGGAGCTGCTTTGGAAGCTGCTGTGTCATCATAGAATTATTGTTGAATTGAAGGCAAAAGAGGATGTTGCAAGGGTCTTGATTTGGATGGACATCTGAGATACACTTCAAATCCAACTTGATGGAAAATATACAGTTCCTCAACACTACTCAGGAGAGATTCTGGCTTGATGCCAATGGGTTGGATAGGAGGAAAGGACATAAAAACCCATTGCTAAATCTGCTTGTTCAGCTATATGTGAAGTGTTGGCACTGCCTATTTGAAATATAAAGGAATTGGTTTTGTTGTCGAAATGGGTCAACCTAGACTTAAGTTTTTCTTTAACATGCCTTGGTAGTTAGTTTCTGAAGTTTGAGAGAAGATTAGCATCAGGATTACTGTTGATTTGTATGTTCAACAATCTCAATGAACAATTCCAAATTGCAATTAACCTATTCTTGCTGTATTAACCACTATATACCATTGGGCATACGTAGTAAGAATGTAAGATGCAACAATAAAAGTGCTTAAGCCCTGAGCGGGTTAGTATCGATTTGCTGCATGAGTTTATAAACTTTGAGCTTTGTTTTCTCATAAATTGTCCTTAGTAACAATAATACTAATAGTGTCAAAATACCTTCTCACATGAATCAGTGTAGTGAGCAGTTCTGAATAAGAATTACATGTCAAAATATCCTGTAGGAAGTCAACATGAATATACATAGAATCGACAATATATTTGGCGTGTGGCCAATAAATTGAGTTTCATGTTATAATCACTTCGTTGCATCTATCAATATGTAAGATCTTGTTTTTACCTAACAGAATTTATGAATAGAAGGAGACAAATGTATTTGTTCGCTCAAATGGTCAAATTTGAAATCATAAGTATTTTTACTAAAATGTAGTTTAGCAAACCGGTGAACTTTGTTAGCTTTAAAATATTTTTATCCCCGTTGCAACGCACGGACACTTAACTAGTTGGTAAAACAATTCATCGATTCAACTAGTGTCGCATACAGTGAATCTTTCTATATTACTGACTAATTACCGGCTGAAGAAAGGTCGAAAAAAGAAAAGAAAAAACACAGTGAATCAATCACGGTACCAGCATTGTTTAATCAGCCTTTAATACACCTAGACAAACCACG]
[+] EMBL AK064515 [TGATTACCAGTCTGTTAACTCTAGGTACATATGGAGTTATTGTCCTGGACATGGACAATTAGGTTAGTACAATCAAACAATAATTAGTCATGTATATTTCTATGCTAAAAAGGCCGAAATTATATTATATTCGCTCTCTGTTCATGTCTATTTGTTATATATTGCTGCTTGTACTCTAAAAAACTGTCACCTACCAAACAACTTTTCTATTTGCTACTATTTCAAATCCAATAATTGTGCTATATCTGCTATATAAACTCTCTGGACTTTGTGCCATGGTTGCTTCCTAATTCAAATTTATATGTTATCTACGCCAAATGACCAATATACTTGTCAAGAATAAATAGGCCATTTTCTAATATGAGATGTGTTGTTTTAGGGGTAACTTACCAATGTGCTAGCATAACTAGCTGAAGCACACTTAGATTTAGCCAGTGAAAAAACTTGGCCAGCAATTACATAACTTCTTTAGTTTGAGAGAATACTTGTTGTTTCAGCTCTCGAGTGTTCCCTGGCATATCTTGAGAGGGGGAGAGCAGCTAAAAAGGAGCTGCTTTGGAAGCTGCTGTGTCATCATAGAATTATTGTTGAATTGAAGGCAAAAGAGGATGTTGCAAGGGTCTTGATTTGGATGGACATCTGAGATACACTTCAAATCCAACTTGATGGAAAATATACAGTTCCTCAACACTACTCAGGAGAGATTCTGGCTTGATGCCAATGGGTTGGATAGGAGGAAAGGACATAAAAACCCATTGCTAAATCTGCTTGTTCAGCTATATGTGAAGTGTTGGCACTGCCTATTTGAAATATAAAGGAATTGGTTTTGTTGTCGAAATGGGTCAACCTAGACTTAAGTTTTTCTTTAACATGCCTTGGTAGTTAGTTTCTGAAGTTTGAGAGAAGATTAGCATCAGGATTACTGTTGATTTGTATGTTCAACAATCTCAATGAACAATTCCAAATTGCAATTAACCTATTCTTGCTGTATTAACCACTATATACCATTGGGCATACGTAGTAAGAATGTAAGATGCAACAATAAAAGTGCTTAAGCCCTGAGCGGGTTAGTATCGATTTGCTGCATGAGTTTATAAACTTTGAGCTTTGTTTTCTCATAAATTGTCCTTAGTAACAATAATACTAATAGTGTCAAAATACCTTCTCACATGAATCAGTGTAGTGAGCAGTTCTGAATAAGAATTACATGTCAAAATATCCTGTAGGAAGTCAACATGAATATACATAGAATCGACAATATATTTGGCGTGTGGCCAATAAATTGAGTTTCATGTTATAATCACTTCGTTGCATCTATCAATATGTAAGATCTTGTTTTTACCTAACAGAATTTATGAATAGAAGGAGACAAATGTATTTGTTCGCTCAAATGGTCAAATTTGAAATCATAAGTATTTTTACTAAAATGTAGTTTAGCAAACCGGTGAACTTTGTTAGCTTTAAAATATTTTTATCCCCGTTGCAACGCACGGACACTTAACTAGTTGGTAAAACAATTCATCGATTCAACTAGTGTCGCATACAGTGAATCTTTCTATATTACTGACTAATTACCGGCTGAAGAAAGGTCGAAAAAAGAAAAGAAAAAACACAGTGAATCAATCACGGTACCAGCATTGTTTAATCAGCCTTTAATACACCTAGACAAACCACG]
consensusID : consensus_2583#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 755 fasta sequence
[ATAATGCTACAATGGAATGGCAATCTTACTTATTGGATATTGGATTCCTTGCCTCACTGAAATTCAAAGAACCGTTGCTGCTTGTGACTGTAGTTAGACCTTTTTTTTTTGGAGAATATTGATAAAGGATTTGAAGGTATGTTTTCAGAACATTATTTACTTGCATGATTTTTCATGTAGAGATCAACTGTGATCCACTGTTATAGAAACATAATGTGTTGATTACCAGTCTGTTAACTCTAGGTACATATGGAGTTATTGTCCTGGACATGGACAATTAGCTCTCGAGTGTTCCCTGGCATATCTTGAGAGGGGGAGAGCAGCTAAAAAGGAGCTGCTTTGGAAGCTGCTGTGTCATCATAGAATTATTGTTGAATTGAAGGCAAAAGAGGATGTTGCAAGGGTCTTGATTTGGATGGACATCTGAGATACACTTCAAATCCAACTTGATGGAAAATATACAGTTCCTCAACACTACTCAGGAGAGATTCTGGCTTGATGCCAATGGGTTGGATAGGAGGAAAGGACATAAAAACCCATTGCTAAATCTGCTTGTTCAGCTATATGTGAAGTGTTGGCACTGCCTATTTGAAATATAAAGGAATTGGTTTTGTTGTCGAAATGGGTCAACCTAGACTTAAGTTTTTCTTTAACATGCCTTGGTAGTTAGTTTCTGAAGTTTGAAAGAAGATTAGCATCAGGATTACTGTTGATTTGTAAGGTCAACAATCTCAATGAACAATTCCAAATTGCAA]
[-] EMBL CB674837 [ATAATGCTACAATGGAATGGCAATCTTACTTATTGGATATTGGATTCCTTGCCTCACTGAAATTCAAAGAACCGTTGCTGCTTGTGACTGTAGTTAGACCTTTTTTTTTTGGAGAATATTGATAAAGGATTTGAAGGTATGTTTTCAGAACATTATTTACTTGCATGATTTTTCATGTAGAGATCAACTGTGATCCACTGTTATAGAAACATAATGTGTTGATTACCAGTCTGTTAACTCTAGGTACATATGGAGTTATTGTCCTGGACATGGACAATTAGCTCTCGAGTGTTCCCTGGCATATCTTGAGAGGGGGAGAGCAGCTAAAAAGGAGCTGCTTTGGAAGCTGCTGTGTCATCATAGAATTATTGTTGAATTGAAGGCAAAAGAGGATGTTGCAAGGGTCTTGATTTGGATGGACATCTGAGATACACTTCAAATCCAACTTGATGGAAAATATACAGTTCCTCAACACTACTCAGGAGAGATTCTGGCTTGATGCCAATGGGTTGGATAGGAGGAAAGGACATAAAAACCCATTGCTAAATCTGCTTGTTCAGCTATATGTGAAGTGTTGGCACTGCCTATTTGAAATATAAAGGAATTGGTTTTGTTGTCGAAATGGGTCAACCTAGACTTAAGTTTTTCTTTAACATGCCTTGGTAGTTAGTTTCTGAAGTTTGAAAGAAGATTAGCATCAGGATTACTGTTGATTTGTAAGGTCAACAATCTCAATGAACAATTCCAAATTGCAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2583#0 TGATTACCAGTCTGTTAACTCTAGGTACATATGGAGTTATTGTCCTGGACATGGACAATT 60
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 AGGTTAGTACAATCAAACAATAATTAGTCATGTATATTTCTATGCTAAAAAGGCCGAAAT 120
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 TATATTATATTCGCTCTCTGTTCATGTCTATTTGTTATATATTGCTGCTTGTACTCTAAA 180
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 AAACTGTCACCTACCAAACAACTTTTCTATTTGCTACTATTTCAAATCCAATAATTGTGC 240
consensus_2583#1 --------------------ATAATGCTAC--AATGGAATGGCAATCTTACTTATTGG-- 36
* * *** * ** *** * * ****
consensus_2583#0 TATATCTGCTATATAAACTCTCTGGACTTT---GTGCCATGGTTGCTTCCTAATTCAAAT 297
consensus_2583#1 -ATATTGGATTCCTTGCCTCACTGAAATTCAAAGAACCGTTGCTGCTTGTGACTGTAGTT 95
**** * * * *** *** * ** * ** * * ***** * * * *
consensus_2583#0 TTATATGTTATCTACGCCAAATGACCAATATACTTGTCAAGAATAAATAGGCCATTTTCT 357
consensus_2583#1 AGACCTTTTTTTTTTGGAGAAT-ATTGATAAAGGATTTGAAGGTATGTTTTCAGAACATT 154
* * ** * * * *** * *** * * * ** * * *
consensus_2583#0 AATATGAGATGTGTTGTTTTAGGGGTAACTTACCAATGTGCTAGCATAACTAGCTGAAGC 417
consensus_2583#1 ATTTACTTGCATGATTTTTCATGTAGAGATCAACTGTGATCCACTGTTA-TAGAAACATA 213
* * ** * *** * * * * * * ** * * * * *** *
consensus_2583#0 ACACTTAGATTTAGCCAGTGAAAAAACTTGGCCAGCAATTACATAACTTCTTTAGTTTGA 477
consensus_2583#1 ATGTGTTGATT--ACCAGTCTGTTAACT---CTAGGTAC-ATATGGAGTTATTGTCCTGG 267
* * **** ***** **** * ** * * ** * ** **
consensus_2583#0 GAGAATACTTGTTGTTTCAGCTCTCGAGTGTTCCCTGGCATATCTTGAGAGGGGGAGAGC 537
consensus_2583#1 ------ACATGGACAATTAGCTCTCGAGTGTTCCCTGGCATATCTTGAGAGGGGGAGAGC 321
** ** * ******************************************
consensus_2583#0 AGCTAAAAAGGAGCTGCTTTGGAAGCTGCTGTGTCATCATAGAATTATTGTTGAATTGAA 597
consensus_2583#1 AGCTAAAAAGGAGCTGCTTTGGAAGCTGCTGTGTCATCATAGAATTATTGTTGAATTGAA 381
************************************************************
consensus_2583#0 GGCAAAAGAGGATGTTGCAAGGGTCTTGATTTGGATGGACATCTGAGATACACTTCAAAT 657
consensus_2583#1 GGCAAAAGAGGATGTTGCAAGGGTCTTGATTTGGATGGACATCTGAGATACACTTCAAAT 441
************************************************************
consensus_2583#0 CCAACTTGATGGAAAATATACAGTTCCTCAACACTACTCAGGAGAGATTCTGGCTTGATG 717
consensus_2583#1 CCAACTTGATGGAAAATATACAGTTCCTCAACACTACTCAGGAGAGATTCTGGCTTGATG 501
************************************************************
consensus_2583#0 CCAATGGGTTGGATAGGAGGAAAGGACATAAAAACCCATTGCTAAATCTGCTTGTTCAGC 777
consensus_2583#1 CCAATGGGTTGGATAGGAGGAAAGGACATAAAAACCCATTGCTAAATCTGCTTGTTCAGC 561
************************************************************
consensus_2583#0 TATATGTGAAGTGTTGGCACTGCCTATTTGAAATATAAAGGAATTGGTTTTGTTGTCGAA 837
consensus_2583#1 TATATGTGAAGTGTTGGCACTGCCTATTTGAAATATAAAGGAATTGGTTTTGTTGTCGAA 621
************************************************************
consensus_2583#0 ATGGGTCAACCTAGACTTAAGTTTTTCTTTAACATGCCTTGGTAGTTAGTTTCTGAAGTT 897
consensus_2583#1 ATGGGTCAACCTAGACTTAAGTTTTTCTTTAACATGCCTTGGTAGTTAGTTTCTGAAGTT 681
************************************************************
consensus_2583#0 TGAGAGAAGATTAGCATCAGGATTACTGTTGATTTGTATGTTCAACAATCTCAATGAACA 957
consensus_2583#1 TGAAAGAAGATTAGCATCAGGATTACTGTTGATTTGTAAGGTCAACAATCTCAATGAACA 741
*** ********************************** * *******************
consensus_2583#0 ATTCCAAATTGCAATTAACCTATTCTTGCTGTATTAACCACTATATACCATTGGGCATAC 1017
consensus_2583#1 ATTCCAAATTGCAA---------------------------------------------- 755
**************
consensus_2583#0 GTAGTAAGAATGTAAGATGCAACAATAAAAGTGCTTAAGCCCTGAGCGGGTTAGTATCGA 1077
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 TTTGCTGCATGAGTTTATAAACTTTGAGCTTTGTTTTCTCATAAATTGTCCTTAGTAACA 1137
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 ATAATACTAATAGTGTCAAAATACCTTCTCACATGAATCAGTGTAGTGAGCAGTTCTGAA 1197
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 TAAGAATTACATGTCAAAATATCCTGTAGGAAGTCAACATGAATATACATAGAATCGACA 1257
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 ATATATTTGGCGTGTGGCCAATAAATTGAGTTTCATGTTATAATCACTTCGTTGCATCTA 1317
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 TCAATATGTAAGATCTTGTTTTTACCTAACAGAATTTATGAATAGAAGGAGACAAATGTA 1377
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 TTTGTTCGCTCAAATGGTCAAATTTGAAATCATAAGTATTTTTACTAAAATGTAGTTTAG 1437
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 CAAACCGGTGAACTTTGTTAGCTTTAAAATATTTTTATCCCCGTTGCAACGCACGGACAC 1497
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 TTAACTAGTTGGTAAAACAATTCATCGATTCAACTAGTGTCGCATACAGTGAATCTTTCT 1557
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 ATATTACTGACTAATTACCGGCTGAAGAAAGGTCGAAAAAAGAAAAGAAAAAACACAGTG 1617
consensus_2583#1 ------------------------------------------------------------
consensus_2583#0 AATCAATCACGGTACCAGCATTGTTTAATCAGCCTTTAATACACCTAGACAAACCACG 1675
consensus_2583#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||