cluster # 2589

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2589 cluster # 2589 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2589#0 length = 767 sequences # 1

consensus_2589#1 length = 584 sequences # 1

consensusID : consensus_2589#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 767
fasta sequence

                              [TTCTTGCGAGGTGCTTCTTGTTCTTGAGGTTGGCCATGGCGGATCACCAGCGGATGAGGATTCACCCCGTCGACCTGGAGGCCGGTGGCCGGCACCGGCCCACGGCGCCGCTGGTGCCCGGCGGCTCGTTCCGCTCCGACAAGGGCGACCCGGCGGCGCTCTACCTGGTGTTCGACCCCAAGGCGCCGCGCTACTCGGTGACGGCGACGAACCCGAACGCGCGCATCGGCATCTACTACGAGGCCGGGTCCAGCCTCAGCGTGTGGTACGACGCGCACCGCCTGGCGCGCGGCGCGCTCCCGGCGTTCTACCAGGGCCACCGCAACACGACGGTGCTGGCCGTCGTCATGGCCGGGCAGGCGCAGCTCGGCGGCGCGGTGATGTCGGCGCTGCAGGACGCGCAGCGCACGGGCGCCGTGCCGCTCGTGTTCCGCGCCGACGTCCCCGTGCGCGTCGAGCTCGGCAGCCTCAGGCTGTGGAAGGTCACGTCGCGGGTGCGCTGCGACCTCGTCGTCGACAGCCTCGGCGTCAACAACCCCGTCAACATCAAGGCCAGCAACTGCAAGTTCAGCTTGAAGCTGTGACGACGCCATTGATGCTTCGATTCTTTGATTTAGTTCAGTTCTTGCCTAGTTCTTGCCATCTTGGTGATGGATTCTTTCAGGATCGAGTGCTTTGTACTATTTGCATTGGTGCACTCCTCCTGCAGCTTGTGTACATCCTGTGTAGTTGAGAGAGATAATAATATATGCATGATTAGTATATTT]

[+] EMBL AK072753             [TTCTTGCGAGGTGCTTCTTGTTCTTGAGGTTGGCCATGGCGGATCACCAGCGGATGAGGATTCACCCCGTCGACCTGGAGGCCGGTGGCCGGCACCGGCCCACGGCGCCGCTGGTGCCCGGCGGCTCGTTCCGCTCCGACAAGGGCGACCCGGCGGCGCTCTACCTGGTGTTCGACCCCAAGGCGCCGCGCTACTCGGTGACGGCGACGAACCCGAACGCGCGCATCGGCATCTACTACGAGGCCGGGTCCAGCCTCAGCGTGTGGTACGACGCGCACCGCCTGGCGCGCGGCGCGCTCCCGGCGTTCTACCAGGGCCACCGCAACACGACGGTGCTGGCCGTCGTCATGGCCGGGCAGGCGCAGCTCGGCGGCGCGGTGATGTCGGCGCTGCAGGACGCGCAGCGCACGGGCGCCGTGCCGCTCGTGTTCCGCGCCGACGTCCCCGTGCGCGTCGAGCTCGGCAGCCTCAGGCTGTGGAAGGTCACGTCGCGGGTGCGCTGCGACCTCGTCGTCGACAGCCTCGGCGTCAACAACCCCGTCAACATCAAGGCCAGCAACTGCAAGTTCAGCTTGAAGCTGTGACGACGCCATTGATGCTTCGATTCTTTGATTTAGTTCAGTTCTTGCCTAGTTCTTGCCATCTTGGTGATGGATTCTTTCAGGATCGAGTGCTTTGTACTATTTGCATTGGTGCACTCCTCCTGCAGCTTGTGTACATCCTGTGTAGTTGAGAGAGATAATAATATATGCATGATTAGTATATTT]




>consensus_2589#0
TTCTTGCGAGGTGCTTCTTGTTCTTGAGGTTGGCCATGGCGGATCACCAGCGGATGAGGA
TTCACCCCGTCGACCTGGAGGCCGGTGGCCGGCACCGGCCCACGGCGCCGCTGGTGCCCG
GCGGCTCGTTCCGCTCCGACAAGGGCGACCCGGCGGCGCTCTACCTGGTGTTCGACCCCA
AGGCGCCGCGCTACTCGGTGACGGCGACGAACCCGAACGCGCGCATCGGCATCTACTACG
AGGCCGGGTCCAGCCTCAGCGTGTGGTACGACGCGCACCGCCTGGCGCGCGGCGCGCTCC
CGGCGTTCTACCAGGGCCACCGCAACACGACGGTGCTGGCCGTCGTCATGGCCGGGCAGG
CGCAGCTCGGCGGCGCGGTGATGTCGGCGCTGCAGGACGCGCAGCGCACGGGCGCCGTGC
CGCTCGTGTTCCGCGCCGACGTCCCCGTGCGCGTCGAGCTCGGCAGCCTCAGGCTGTGGA
AGGTCACGTCGCGGGTGCGCTGCGACCTCGTCGTCGACAGCCTCGGCGTCAACAACCCCG
TCAACATCAAGGCCAGCAACTGCAAGTTCAGCTTGAAGCTGTGACGACGCCATTGATGCT
TCGATTCTTTGATTTAGTTCAGTTCTTGCCTAGTTCTTGCCATCTTGGTGATGGATTCTT
TCAGGATCGAGTGCTTTGTACTATTTGCATTGGTGCACTCCTCCTGCAGCTTGTGTACAT
CCTGTGTAGTTGAGAGAGATAATAATATATGCATGATTAGTATATTT

consensusID : consensus_2589#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 584
fasta sequence

                              [CCCGGNTCCACCCTTCAGCGTGTGNTACAACGCGGCACCTGCTTGGCGCACCGGCGCAGCTCCNCGGCGTTTCTACCAGGGCCACCGCAACACGACGGTGCTGCCACGTCGTCATGCCCGGCAGGCACAGCTTCGCGGCCCGGTGATGTCGGCCCTGCAGGACGCCCAGCGCACAGGGCCCCAGTCCCGCTCTGTGTTTCCGCCCCGACAGTCCCCCGTTGCGCGTCGAGCTTCGCCAACCCTCAAGCCTTGTGGAAGGTCANCAGTCCCGGTTGCGCTTGCGACCTTCGTTCGGTTCGGACAAGCCNTCGGCGGTCAANCAAACCCCCCGTCCAACAATCCAAGGCCAAGCAACTGGCCAAAGTTCAGCCTGGAAGCTGTGGACCGAACGCCATTTGGATGGCTTTCGATTCCTTTGGATCCCCCCAAGCTTCTGGCACTAAGTTCTTGCCAATCTTGGTGAATGGATTCTTTCAGGATCGAGTGGCTTTGTACTATTGCATTGGTNCACTCCTCCTGCAGCTTGTGTACATCCTGTGTATTGAGATCCNAACAATATATGCATGATTAGTATAAAAAAAAAA]

[+] EMBL BI805400             [CCCGGNTCCACCCTTCAGCGTGTGNTACAACGCGGCACCTGCTTGGCGCACCGGCGCAGCTCCNCGGCGTTTCTACCAGGGCCACCGCAACACGACGGTGCTGCCACGTCGTCATGCCCGGCAGGCACAGCTTCGCGGCCCGGTGATGTCGGCCCTGCAGGACGCCCAGCGCACAGGGCCCCAGTCCCGCTCTGTGTTTCCGCCCCGACAGTCCCCCGTTGCGCGTCGAGCTTCGCCAACCCTCAAGCCTTGTGGAAGGTCANCAGTCCCGGTTGCGCTTGCGACCTTCGTTCGGTTCGGACAAGCCNTCGGCGGTCAANCAAACCCCCCGTCCAACAATCCAAGGCCAAGCAACTGGCCAAAGTTCAGCCTGGAAGCTGTGGACCGAACGCCATTTGGATGGCTTTCGATTCCTTTGGATCCCCCCAAGCTTCTGGCACTAAGTTCTTGCCAATCTTGGTGAATGGATTCTTTCAGGATCGAGTGGCTTTGTACTATTGCATTGGTNCACTCCTCCTGCAGCTTGTGTACATCCTGTGTATTGAGATCCNAACAATATATGCATGATTAGTATAAAAAAAAAA]




>consensus_2589#1
CCCGGNTCCACCCTTCAGCGTGTGNTACAACGCGGCACCTGCTTGGCGCACCGGCGCAGC
TCCNCGGCGTTTCTACCAGGGCCACCGCAACACGACGGTGCTGCCACGTCGTCATGCCCG
GCAGGCACAGCTTCGCGGCCCGGTGATGTCGGCCCTGCAGGACGCCCAGCGCACAGGGCC
CCAGTCCCGCTCTGTGTTTCCGCCCCGACAGTCCCCCGTTGCGCGTCGAGCTTCGCCAAC
CCTCAAGCCTTGTGGAAGGTCANCAGTCCCGGTTGCGCTTGCGACCTTCGTTCGGTTCGG
ACAAGCCNTCGGCGGTCAANCAAACCCCCCGTCCAACAATCCAAGGCCAAGCAACTGGCC
AAAGTTCAGCCTGGAAGCTGTGGACCGAACGCCATTTGGATGGCTTTCGATTCCTTTGGA
TCCCCCCAAGCTTCTGGCACTAAGTTCTTGCCAATCTTGGTGAATGGATTCTTTCAGGAT
CGAGTGGCTTTGTACTATTGCATTGGTNCACTCCTCCTGCAGCTTGTGTACATCCTGTGT
ATTGAGATCCNAACAATATATGCATGATTAGTATAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2589#0      TTCTTGCGAGGTGCTTCTTGTTCTTGAGGTTGGCCATGGCGGATCACCAGCGGATGAGGA 60
consensus_2589#1      ------------------------------------------------------------
                                                                                  

consensus_2589#0      TTCACCCCGTCGACCTGGAGGCCGGTGGCCGGCACCGGCCCACGGCGCCGCTGGTGCCCG 120
consensus_2589#1      ------------------------------------------------------------
                                                                                  

consensus_2589#0      GCGGCTCGTTCCGCTCCGACAAGGGCGACCCGGCGGCGCTCTACCTGGTGTTCGACCCCA 180
consensus_2589#1      ------------------------------------------------------------
                                                                                  

consensus_2589#0      AGGCGCCGCGCTACTCGGTGACGGCGACGAACCCGAACGCGCGCATCGGCATCTACTACG 240
consensus_2589#1      ------------------------------------------------------------
                                                                                  

consensus_2589#0      AGGCCGGGTCCAGCCT-CAGCGTGTGGTACGACGCG-CACC-GCCTGGCGCGC-GGCGCG 296
consensus_2589#1      --CCCGGNTCCACCCTTCAGCGTGTGNTACAACGCGGCACCTGCTTGGCGCACCGGCGCA 58
                         **** **** *** ********* *** ***** **** ** ****** * ***** 

consensus_2589#0      --CTCCCGGCGTT-CTACCAGGGCCACCGCAACACGACGGTGCTGGC-CGTCGTCATGGC 352
consensus_2589#1      GCTCCNCGGCGTTTCTACCAGGGCCACCGCAACACGACGGTGCTGCCACGTCGTCATGCC 118
                          * ******* ******************************* * ********** *

consensus_2589#0      CGGGCAGGCGCAGCTCGGCGGCGCGGTGATGTCGGCGCTGCAGGACGCGCAGCGCACGGG 412
consensus_2589#1      CGG-CAGGCACAGCTTCGCGGCCCGGTGATGTCGGCCCTGCAGGACGCCCAGCGCACAGG 177
                      *** ***** *****  ***** ************* *********** ******** **

consensus_2589#0      CGCC--GTGCCGCTC-GTGTT-CCGCGCCGAC-GTCCCCG--TGCGCGTCGAGCTCGGC- 464
consensus_2589#1      GCCCCAGTCCCGCTCTGTGTTTCCGCCCCGACAGTCCCCCGTTGCGCGTCGAGCTTCGCC 237
                        **  ** ****** ***** **** ***** ******   *************  ** 

consensus_2589#0      -AGCCTCAGGC--TGTGGAAGGTCAC--GTCGCGGGTGCGCT-GCGACCT-----CGTCG 513
consensus_2589#1      AACCCTCAAGCCTTGTGGAAGGTCANCAGTCCCGGTTGCGCTTGCGACCTTCGTTCGGTT 297
                       * ***** **  ************   *** *** ****** *******     **   

consensus_2589#0      TCGACAG--CCTCGGCG-TCAACAA----CCCCGTC-AACA--TCAAGGCCA-GCAACTG 562
consensus_2589#1      CGGACAAGCCNTCGGCGGTCAANCAAACCCCCCGTCCAACAATCCAAGGCCAAGCAACTG 357
                        ****   * ****** ****  *    ******* ****   ******** *******

consensus_2589#0      C---AAGTTCAGCTTG-AAGCTGTGAC---GACGCCATT--GATG--CTTCGATTCTTT- 610
consensus_2589#1      GCCAAAGTTCAGCCTGGAAGCTGTGGACCGAACGCCATTTGGATGGCTTTCGATTCCTTT 417
                          ********* ** ********      ********  ****   ******** ** 

consensus_2589#0      -GATTTAGTTCAGTTCTTG---CCTAGTTCTTGCCA-TCTTGGTGA-TGGATTCTTTCAG 664
consensus_2589#1      GGATCCCCCCAAGCTTCTGGCACTAAGTTCTTGCCAATCTTGGTGAATGGATTCTTTCAG 477
                       ***       ** *  **   *  *********** ********* *************

consensus_2589#0      GATCGAGTG-CTTTGTACTATTTGCATTGGTGCACTCCTCCTGCAGCTTGTGTACATCCT 723
consensus_2589#1      GATCGAGTGGCTTTGTACTATT-GCATTGGTNCACTCCTCCTGCAGCTTGTGTACATCCT 536
                      ********* ************ ******** ****************************

consensus_2589#0      GTGTAGTTGAGAGAGATAATAATATATGCATGATTAGTATATTT------ 767
consensus_2589#1      GTGTA-TTGAGATCCN-AACAATATATGCATGATTAGTATAAAAAAAAAA 584
                      ***** ******     ** *********************