cluster # 259

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Oryza sativa
cluster # 259 cluster # 259 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_259#0 length = 412 sequences # 1

consensus_259#1 length = 304 sequences # 1

consensusID : consensus_259#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 412
fasta sequence

                              [TCTCCAGTTGAGTCAGTACTTCCACCAGTGAAGTCTTCACCACCACACGCACCGGTTATCTCAGAACCACCACCAACAAAGTCTTCACCGCCGCAAGTGCCAGTGACCTCGGAACCACCGCCAGCAAAGTCTTCACCTCCACATGAACCAATTAGCCCGCCAGAAACACCAGAGAAGTCTTACCCGCCATCAACTCCTGAGGAATCATCTCCTCCNTCAGTCCCCAAGGCTTCATCTCCACCAACTGGAGAAGTCTCTTCCTCCACCGGCTACAGTGGAGCTTGCGGCCTCCAACAGTTAAGCCTTTGCCCCCACGGGTTCCTGTGAAGTTAACGGCAACTCCGGAGAAGTTTTCACCCCGGCAAGTTCCGGTGATTTTGCNGCTCCTTCAATTAAATNTCTTCCCAANGGG]

[+] EMBL C72813               [TCTCCAGTTGAGTCAGTACTTCCACCAGTGAAGTCTTCACCACCACACGCACCGGTTATCTCAGAACCACCACCAACAAAGTCTTCACCGCCGCAAGTGCCAGTGACCTCGGAACCACCGCCAGCAAAGTCTTCACCTCCACATGAACCAATTAGCCCGCCAGAAACACCAGAGAAGTCTTACCCGCCATCAACTCCTGAGGAATCATCTCCTCCNTCAGTCCCCAAGGCTTCATCTCCACCAACTGGAGAAGTCTCTTCCTCCACCGGCTACAGTGGAGCTTGCGGCCTCCAACAGTTAAGCCTTTGCCCCCACGGGTTCCTGTGAAGTTAACGGCAACTCCGGAGAAGTTTTCACCCCGGCAAGTTCCGGTGATTTTGCNGCTCCTTCAATTAAATNTCTTCCCAANGGG]




>consensus_259#0
TCTCCAGTTGAGTCAGTACTTCCACCAGTGAAGTCTTCACCACCACACGCACCGGTTATC
TCAGAACCACCACCAACAAAGTCTTCACCGCCGCAAGTGCCAGTGACCTCGGAACCACCG
CCAGCAAAGTCTTCACCTCCACATGAACCAATTAGCCCGCCAGAAACACCAGAGAAGTCT
TACCCGCCATCAACTCCTGAGGAATCATCTCCTCCNTCAGTCCCCAAGGCTTCATCTCCA
CCAACTGGAGAAGTCTCTTCCTCCACCGGCTACAGTGGAGCTTGCGGCCTCCAACAGTTA
AGCCTTTGCCCCCACGGGTTCCTGTGAAGTTAACGGCAACTCCGGAGAAGTTTTCACCCC
GGCAAGTTCCGGTGATTTTGCNGCTCCTTCAATTAAATNTCTTCCCAANGGG

consensusID : consensus_259#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 304
fasta sequence

                              [CCGCCAGAAACACCAGAGAAGTNTTACCCGCCATCAACTCCTGAGGAATCATCTCCTCCCTCANTCCCCAAGGNTTCATCTCCACCAACTNAGAAGTNTCTTCCTCCACCGGCTACAGTNAGCTTGCGGCCTCCAACAGTTAAGCNTTTGCCCCCACCGGTTCCTGTNAGCTCACCGCCACCTCCGGAGAAGTNTCCACCCCCGCNAGCTCCGGTGATCTTGCNGCCTCCTCCAATTAANTNTCCTCCCCCACCGGCTCCAGTAATCTGGCCACCTCCTCCAGTTAAGTCCCCACCACCACCAG]

[+] EMBL C71802               [CCGCCAGAAACACCAGAGAAGTNTTACCCGCCATCAACTCCTGAGGAATCATCTCCTCCCTCANTCCCCAAGGNTTCATCTCCACCAACTNAGAAGTNTCTTCCTCCACCGGCTACAGTNAGCTTGCGGCCTCCAACAGTTAAGCNTTTGCCCCCACCGGTTCCTGTNAGCTCACCGCCACCTCCGGAGAAGTNTCCACCCCCGCNAGCTCCGGTGATCTTGCNGCCTCCTCCAATTAANTNTCCTCCCCCACCGGCTCCAGTAATCTGGCCACCTCCTCCAGTTAAGTCCCCACCACCACCAG]




>consensus_259#1
CCGCCAGAAACACCAGAGAAGTNTTACCCGCCATCAACTCCTGAGGAATCATCTCCTCCC
TCANTCCCCAAGGNTTCATCTCCACCAACTNAGAAGTNTCTTCCTCCACCGGCTACAGTN
AGCTTGCGGCCTCCAACAGTTAAGCNTTTGCCCCCACCGGTTCCTGTNAGCTCACCGCCA
CCTCCGGAGAAGTNTCCACCCCCGCNAGCTCCGGTGATCTTGCNGCCTCCTCCAATTAAN
TNTCCTCCCCCACCGGCTCCAGTAATCTGGCCACCTCCTCCAGTTAAGTCCCCACCACCA
CCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_259#0      TCTCCAGTTGAGTCAGTACTTCCACCAGTGAAGTCTTCACCACCACACGCACCGGTTATC 60
consensus_259#1      ------------------------------------------------------------
                                                                                 

consensus_259#0      TCAGAACCACCACCAACAAAGTCTTCACCGCCGCAAGTGCCAGTGACCTCGGAACCACCG 120
consensus_259#1      ------------------------------------------------------------
                                                                                 

consensus_259#0      CCAGCAAAGTCTTCACCTCCACATGAACCAATTAGCCCGCCAGAAACACCAGAGAAGTCT 180
consensus_259#1      ------------------------------------CCGCCAGAAACACCAGAGAAGTNT 24
                                                         ********************** *

consensus_259#0      TACCCGCCATCAACTCCTGAGGAATCATCTCCTCCNTCAGTCCCCAAGGCTTCATCTCCA 240
consensus_259#1      TACCCGCCATCAACTCCTGAGGAATCATCTCCTCCCTCANTCCCCAAGGNTTCATCTCCA 84
                     *********************************** *** ********* **********

consensus_259#0      CCAACTGGAGAAGTCTCTTCCTCCACCGGCTACAGTGGAGCTTGCGGCCTCCAACAGTTA 300
consensus_259#1      CCAACTN-AGAAGTNTCTTCCTCCACCGGCTACAGTN-AGCTTGCGGCCTCCAACAGTTA 142
                     ******  ****** *********************  **********************

consensus_259#0      AGCCTTTGCCCCCACGGGTTCCTGTGAAGTTAACGGCAACTCCGGAGAAGTTTTCACCCC 360
consensus_259#1      AGCNTTTGCCCCCACCGGTTCCTGTNAGCTCACCGCCACCTCCGGAGAAGTNTCCACCCC 202
                     *** *********** ********* *  * * ** ** ************ * ******

consensus_259#0      GGCAAGTTCCGGTGATTTTGCNGC-TCCTTCAATTAAATNTCTTCCCA-ANGGG------ 412
consensus_259#1      CGCNAGCTCCGGTGATCTTGCNGCCTCCTCCAATTAANTNTCCTCCCCCACCGGCTCCAG 262
                      ** ** ********* ******* **** ******* **** ****  *  **      

consensus_259#0      ------------------------------------------
consensus_259#1      TAATCTGGCCACCTCCTCCAGTTAAGTCCCCACCACCACCAG 304