cluster # 2593

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Oryza sativa
cluster # 2593 cluster # 2593 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2593#0 length = 651 sequences # 1

consensus_2593#1 length = 392 sequences # 1

consensusID : consensus_2593#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 651
fasta sequence

                              [TTCGTCGCAAAATTTAAATTGATGATTAAATGATGGCATGTAACTCAATGCTCCACGACATAAAAATTGTAATGGTTATGCAACTAAAGTTCAACTGAAATGGCACCTACTGTGTAACAAATCTGAAGTTCTGAACCCATCTTTGGGTTACAAATTGGAATCAGGTATGCTTGCTAATCTCTTACTTCTAGAGCTAAATAAGCTTATCTGTTCTACTAGTTTCACAGCATACGGAACACTCGAACTGCATCTCTGTTCTTCGGATTCCCCTTGTAGATGGTCATCGTCCCCTCGTCGAGATCAACCAAGACGGTGCACAGAGTGTACAGTGTTGGACCTGTCATGTAAATCGGGTACTTGTCATCGGCCGTGTCCCCGAGCAGCGACAGCGCCTTCTCCTTGGTGTCCGGCGAGAGCTCCGCCGCTCTCCTCTCCCTGCTCATGGAGTTCTCGTCCTGCACCTGGTTGACCTGGAGATGGCGGTACATGTTGGCGTGGAAAAAGGGCGCGGCGGCGGCCTCGCGCACGGAGAAGCGGTTGCCGGAGGCGGTCTCGACGTTGACGATCCTCCGGCGCCGGACGTCCATCAGGTTGTAGCTGTGGCCGACCGACATGGCCGGCGAGCTCACCCTATTCATGGCGTCTTCGAGG]

[+] EMBL CB675954             [TTCGTCGCAAAATTTAAATTGATGATTAAATGATGGCATGTAACTCAATGCTCCACGACATAAAAATTGTAATGGTTATGCAACTAAAGTTCAACTGAAATGGCACCTACTGTGTAACAAATCTGAAGTTCTGAACCCATCTTTGGGTTACAAATTGGAATCAGGTATGCTTGCTAATCTCTTACTTCTAGAGCTAAATAAGCTTATCTGTTCTACTAGTTTCACAGCATACGGAACACTCGAACTGCATCTCTGTTCTTCGGATTCCCCTTGTAGATGGTCATCGTCCCCTCGTCGAGATCAACCAAGACGGTGCACAGAGTGTACAGTGTTGGACCTGTCATGTAAATCGGGTACTTGTCATCGGCCGTGTCCCCGAGCAGCGACAGCGCCTTCTCCTTGGTGTCCGGCGAGAGCTCCGCCGCTCTCCTCTCCCTGCTCATGGAGTTCTCGTCCTGCACCTGGTTGACCTGGAGATGGCGGTACATGTTGGCGTGGAAAAAGGGCGCGGCGGCGGCCTCGCGCACGGAGAAGCGGTTGCCGGAGGCGGTCTCGACGTTGACGATCCTCCGGCGCCGGACGTCCATCAGGTTGTAGCTGTGGCCGACCGACATGGCCGGCGAGCTCACCCTATTCATGGCGTCTTCGAGG]




>consensus_2593#0
TTCGTCGCAAAATTTAAATTGATGATTAAATGATGGCATGTAACTCAATGCTCCACGACA
TAAAAATTGTAATGGTTATGCAACTAAAGTTCAACTGAAATGGCACCTACTGTGTAACAA
ATCTGAAGTTCTGAACCCATCTTTGGGTTACAAATTGGAATCAGGTATGCTTGCTAATCT
CTTACTTCTAGAGCTAAATAAGCTTATCTGTTCTACTAGTTTCACAGCATACGGAACACT
CGAACTGCATCTCTGTTCTTCGGATTCCCCTTGTAGATGGTCATCGTCCCCTCGTCGAGA
TCAACCAAGACGGTGCACAGAGTGTACAGTGTTGGACCTGTCATGTAAATCGGGTACTTG
TCATCGGCCGTGTCCCCGAGCAGCGACAGCGCCTTCTCCTTGGTGTCCGGCGAGAGCTCC
GCCGCTCTCCTCTCCCTGCTCATGGAGTTCTCGTCCTGCACCTGGTTGACCTGGAGATGG
CGGTACATGTTGGCGTGGAAAAAGGGCGCGGCGGCGGCCTCGCGCACGGAGAAGCGGTTG
CCGGAGGCGGTCTCGACGTTGACGATCCTCCGGCGCCGGACGTCCATCAGGTTGTAGCTG
TGGCCGACCGACATGGCCGGCGAGCTCACCCTATTCATGGCGTCTTCGAGG

consensusID : consensus_2593#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 392
fasta sequence

                              [TCACAGAGGAGGAAGATCAACACCACCACCGGGAAGACGAAGCCGCCGCCGTCGCCGCCGACGCCGACGACGACTGCTCCGACGTCCTGATCGTCGGCGAGTCGGCGGCGATCGCCGCGCACAACGAGGACGCCAACGTCGCGCTCCTCGGCCACACCTACGTGGTGAAGGCCACCTCGCCGGACGGCTCGTCGTCGTTCACCGCCTACACCTACGCCGGCGAGCTCCCCACCTGCGCCTTCGGCTTCAACAGCAACGGAGTGGCGTTCACGCTCGACTCCGTCCCGCCGGCGAGCGGCGAGGTCGTCGCCGGCGCCATCGCCCGGAACTTCGTCTCGCGCGACCTCCTCGAAGCGACGAGCCTCGAAGACGCCATGAATATGGTGAGCTCG]

[+] EMBL CB675953             [TCACAGAGGAGGAAGATCAACACCACCACCGGGAAGACGAAGCCGCCGCCGTCGCCGCCGACGCCGACGACGACTGCTCCGACGTCCTGATCGTCGGCGAGTCGGCGGCGATCGCCGCGCACAACGAGGACGCCAACGTCGCGCTCCTCGGCCACACCTACGTGGTGAAGGCCACCTCGCCGGACGGCTCGTCGTCGTTCACCGCCTACACCTACGCCGGCGAGCTCCCCACCTGCGCCTTCGGCTTCAACAGCAACGGAGTGGCGTTCACGCTCGACTCCGTCCCGCCGGCGAGCGGCGAGGTCGTCGCCGGCGCCATCGCCCGGAACTTCGTCTCGCGCGACCTCCTCGAAGCGACGAGCCTCGAAGACGCCATGAATATGGTGAGCTCG]




>consensus_2593#1
TCACAGAGGAGGAAGATCAACACCACCACCGGGAAGACGAAGCCGCCGCCGTCGCCGCCG
ACGCCGACGACGACTGCTCCGACGTCCTGATCGTCGGCGAGTCGGCGGCGATCGCCGCGC
ACAACGAGGACGCCAACGTCGCGCTCCTCGGCCACACCTACGTGGTGAAGGCCACCTCGC
CGGACGGCTCGTCGTCGTTCACCGCCTACACCTACGCCGGCGAGCTCCCCACCTGCGCCT
TCGGCTTCAACAGCAACGGAGTGGCGTTCACGCTCGACTCCGTCCCGCCGGCGAGCGGCG
AGGTCGTCGCCGGCGCCATCGCCCGGAACTTCGTCTCGCGCGACCTCCTCGAAGCGACGA
GCCTCGAAGACGCCATGAATATGGTGAGCTCG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2593#0      TTCGTCGCAAAATTTAAATTGATGATTAAATGATGGCATGTAACTCAATGCTCCACGACA 60
consensus_2593#1      ------------------------------------------------------------
                                                                                  

consensus_2593#0      TAAAAATTGTAATGGTTATGCAACTAAAGTTCAACTGAAATGGCACCTACTGTGTAACAA 120
consensus_2593#1      ------------------------------------------------------------
                                                                                  

consensus_2593#0      ATCTGAAGTTCTGAACCCATCTTTGGGTTACAAATTGGAATCAGGTATGCTTGCTAATCT 180
consensus_2593#1      ------------------------------------------------------------
                                                                                  

consensus_2593#0      CTTACTTCTAGAGCTAAATAAGCTTATCTGTTCTACTAGTTTCACAGCATACGGAACACT 240
consensus_2593#1      ------------------------------TCACAGAGGAGGAAGATCAACACCACCACC 30
                                                    *   *   *    * * **     * *** 

consensus_2593#0      CGAACTGCATCTCTGTTCTTCGGATTCCCCTTGTAGATGGTCATCGTCCCCTCGTCGAGA 300
consensus_2593#1      GGGAAGACGAAGCCGCCGCCGTCGCCGCCGACGCCGACGACGACTGCTCCGACGTCCTGA 90
                       * *   *    * *            **   *  ** *   *  *  **  ****  **

consensus_2593#0      TCAACCAAGACGGTGCACAGAGTGTACAGTGTTGGACCTGTCATGTAAATCGGGTACTTG 360
consensus_2593#1      TCGTCGGCGA--GTCGGCGGCGATCGCCGCGCACAACGAGG-ACGCCAACGTCGCGC--- 144
                      **  *   **  **   * * *    * * *    **  *  * *  **    *  *   

consensus_2593#0      TCATCGGCCGTGTCCCCGAGCAGCGACAGCGCCTTCTCCTTGGTGTCCGGCGAGAGCTCC 420
consensus_2593#1      TCCTCGGCCACA--CCTACGTGGTGAAGGCCACCTCGCCGGACGGCTCGTCGTCG--TTC 200
                      ** ******     **   *  * **  **  * ** **     *  ** **     * *

consensus_2593#0      GCCGCTCTCCTCTCCCTGCTCATGGAGTTCTCGTCCTGCACCTGGTTGACCTGGAGATGG 480
consensus_2593#1      ACCGCCTACACCTACGC---CGGCGAGCTCCCCACCTGCGCCT--TCGGCTTCAACA--- 252
                       ****   *  ** *     *   *** ** *  ***** ***  * * * *  * *   

consensus_2593#0      CGGTACATGTTGGCGTGGAAAAAGGGCGCGGCGGCGGCCTCGCGCACGGAGAAGCGGTTG 540
consensus_2593#1      -GCAACGGAGTGGCGTTCACGCTCGACTCCGTCCCG--CCGGCGAGCGGCGAGGTCGTCG 309
                       *  **    ******  *     * * * *   **  *  ***  *** ** *  ** *

consensus_2593#0      CCGGAGGCGGTCTCGACGTTGACGATCCTCCGGCGCCGGACGTCCATCAGGTTGTAGCTG 600
consensus_2593#1      CCGG---CGCCATCG-CCCGGAACTTCGTCTCGCGC--GACCTCCTCGAAGCGACGAGCC 363
                      ****   **   *** *   **   ** **  ****  *** ***   * *         

consensus_2593#0      TGGCCGAC-CGACATGGCCGGCGAGCTCACCCTATTCATGGCGTCTTCGAGG 651
consensus_2593#1      TCGAAGACGCCATGAATATGGTGAGCTCG----------------------- 392
                      * *  *** * *       ** ******