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Oryza sativa
cluster # 2598 cluster # 2598       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2598#0 length = 695 sequences # 1  
consensus_2598#1 length = 680 sequences # 1  

consensusID : consensus_2598#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence
                              [TTTTTTTTTTTTTTTAAGGAGCAATCATGGGTCATCCAGATTAAGATTGCAAGTAGACATGGCCATACTTCGTCTCATACATACTTCTTCCAAAGTTTAATCGCAAGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGGGAGCTCATGTAGCGTTCGCACAAGACTAAAGGTGTTCCATGCCAAATCGTCAACACCTTACCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTATCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCCGATGATGTTCTTTAAGAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCATCAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCTTTATCGCAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTGAAGCAATTTTCCCAATGCGGATGAAGCCTTTGGAAGGGATGCANAGAGGGGTTCCGACCTGGAATAAAGGAAACAATCACAGACAGGTATGTTCATAGCANGGCTCTTCAGAAATTCAGTTATAGCTTTCAATGATCCAAGGGAAGAAGCTTGCACATAAACACCCCCCCTTGTCTCG]

[+] EMBL CA763120             [TTTTTTTTTTTTTTTAAGGAGCAATCATGGGTCATCCAGATTAAGATTGCAAGTAGACATGGCCATACTTCGTCTCATACATACTTCTTCCAAAGTTTAATCGCAAGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGGGAGCTCATGTAGCGTTCGCACAAGACTAAAGGTGTTCCATGCCAAATCGTCAACACCTTACCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTATCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCCGATGATGTTCTTTAAGAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCATCAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCTTTATCGCAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTGAAGCAATTTTCCCAATGCGGATGAAGCCTTTGGAAGGGATGCANAGAGGGGTTCCGACCTGGAATAAAGGAAACAATCACAGACAGGTATGTTCATAGCANGGCTCTTCAGAAATTCAGTTATAGCTTTCAATGATCCAAGGGAAGAAGCTTGCACATAAACACCCCCCCTTGTCTCG]


>consensus_2598#0 TTTTTTTTTTTTTTTAAGGAGCAATCATGGGTCATCCAGATTAAGATTGCAAGTAGACAT GGCCATACTTCGTCTCATACATACTTCTTCCAAAGTTTAATCGCAAGGGCGCACTGTGTT CTGCAAGTACAACTAAACACAACCGTAAACACAATGGGAGCTCATGTAGCGTTCGCACAA GACTAAAGGTGTTCCATGCCAAATCGTCAACACCTTACCAACGTTACATGTAGTTATGTG AAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTATCTTGAACATGCTCTTCAGTGCT CGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCCGATGATGTTCTTTAAGAACATCA ATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCATCAAGTCCAAATGTTCTACCAAAA CTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCTTTATCGCAACCTTCTCTCCCTCT CTTGCCACATCAACTTGCTTATGGCTATTCTGGATTGAAGCAATTTTCCCAATGCGGATG AAGCCTTTGGAAGGGATGCANAGAGGGGTTCCGACCTGGAATAAAGGAAACAATCACAGA CAGGTATGTTCATAGCANGGCTCTTCAGAAATTCAGTTATAGCTTTCAATGATCCAAGGG AAGAAGCTTGCACATAAACACCCCCCCTTGTCTCG



consensusID : consensus_2598#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 680
fasta sequence
                              [TTTTTTTTTTTTTTTTTTTTTTTAAACTTAAAACATTTAAGGAGCAATCATGGGTCATCCAGATTAAAATTGCAAGTAAACATGGCCATACTTCGTCTCAAACATACTTCTTCCAAAGTTTAATCGCAGGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGGGGGCTCATGTAGCGTTCGCACAAAACTAAAGGTGTTCCACGCCAAATCGTCAACACCTTACCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTATCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCCGATAATGTTCTTTAAAAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCATCAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCTTTATCGAAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTGAAGCAATTTTCCCAATGCGGATAAGGCCTTTGGAAGGGATGCAAAGAGGGGTTCCGACCTGGAATAAAGGAAACAATCACAGACCGGTATGTTCATAGCAGGGCTCTTCAGAAATTCGGTTATAGCTTTCAATGATCCAA]

[+] EMBL CA763121             [TTTTTTTTTTTTTTTTTTTTTTTAAACTTAAAACATTTAAGGAGCAATCATGGGTCATCCAGATTAAAATTGCAAGTAAACATGGCCATACTTCGTCTCAAACATACTTCTTCCAAAGTTTAATCGCAGGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGGGGGCTCATGTAGCGTTCGCACAAAACTAAAGGTGTTCCACGCCAAATCGTCAACACCTTACCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTATCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCCGATAATGTTCTTTAAAAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCATCAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCTTTATCGAAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTGAAGCAATTTTCCCAATGCGGATAAGGCCTTTGGAAGGGATGCAAAGAGGGGTTCCGACCTGGAATAAAGGAAACAATCACAGACCGGTATGTTCATAGCAGGGCTCTTCAGAAATTCGGTTATAGCTTTCAATGATCCAA]


>consensus_2598#1 TTTTTTTTTTTTTTTTTTTTTTTAAACTTAAAACATTTAAGGAGCAATCATGGGTCATCC AGATTAAAATTGCAAGTAAACATGGCCATACTTCGTCTCAAACATACTTCTTCCAAAGTT TAATCGCAGGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGG GGGCTCATGTAGCGTTCGCACAAAACTAAAGGTGTTCCACGCCAAATCGTCAACACCTTA CCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTA TCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCC GATAATGTTCTTTAAAAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCAT CAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCT TTATCGAAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTG AAGCAATTTTCCCAATGCGGATAAGGCCTTTGGAAGGGATGCAAAGAGGGGTTCCGACCT GGAATAAAGGAAACAATCACAGACCGGTATGTTCATAGCAGGGCTCTTCAGAAATTCGGT TATAGCTTTCAATGATCCAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2598#0      -----------TTTTTTTTTTTT------------TTTAAGGAGCAATCATGGGTCATCC 37
consensus_2598#1      TTTTTTTTTTTTTTTTTTTTTTTAAACTTAAAACATTTAAGGAGCAATCATGGGTCATCC 60
                                 ************            *************************

consensus_2598#0      AGATTAAGATTGCAAGTAGACATGGCCATACTTCGTCTCATACATACTTCTTCCAAAGTT 97
consensus_2598#1      AGATTAAAATTGCAAGTAAACATGGCCATACTTCGTCTCAAACATACTTCTTCCAAAGTT 120
                      ******* ********** ********************* *******************

consensus_2598#0      TAATCGCAAGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGG 157
consensus_2598#1      TAATCGCAGGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGG 180
                      ******** ***************************************************

consensus_2598#0      GAGCTCATGTAGCGTTCGCACAAGACTAAAGGTGTTCCATGCCAAATCGTCAACACCTTA 217
consensus_2598#1      GGGCTCATGTAGCGTTCGCACAAAACTAAAGGTGTTCCACGCCAAATCGTCAACACCTTA 240
                      * ********************* *************** ********************

consensus_2598#0      CCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTA 277
consensus_2598#1      CCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTA 300
                      ************************************************************

consensus_2598#0      TCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCC 337
consensus_2598#1      TCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCC 360
                      ************************************************************

consensus_2598#0      GATGATGTTCTTTAAGAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCAT 397
consensus_2598#1      GATAATGTTCTTTAAAAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCAT 420
                      *** *********** ********************************************

consensus_2598#0      CAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCT 457
consensus_2598#1      CAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCT 480
                      ************************************************************

consensus_2598#0      TTATCGCAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTG 517
consensus_2598#1      TTATCGAAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTG 540
                      ****** *****************************************************

consensus_2598#0      AAGCAATTTTCCCAATGCGGATGAAGCCTTTGGAAGGGATGCANAGAGGGGTTCCGACCT 577
consensus_2598#1      AAGCAATTTTCCCAATGCGGATAAGGCCTTTGGAAGGGATGCAAAGAGGGGTTCCGACCT 600
                      ********************** * ****************** ****************

consensus_2598#0      GGAATAAAGGAAACAATCACAGACAGGTATGTTCATAGCANGGCTCTTCAGAAATTCAGT 637
consensus_2598#1      GGAATAAAGGAAACAATCACAGACCGGTATGTTCATAGCAGGGCTCTTCAGAAATTCGGT 660
                      ************************ *************** **************** **

consensus_2598#0      TATAGCTTTCAATGATCCAAGGGAAGAAGCTTGCACATAAACACCCCCCCTTGTCTCG 695
consensus_2598#1      TATAGCTTTCAATGATCCAA-------------------------------------- 680
                      ********************                                      




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)