These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2598#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [TTTTTTTTTTTTTTTAAGGAGCAATCATGGGTCATCCAGATTAAGATTGCAAGTAGACATGGCCATACTTCGTCTCATACATACTTCTTCCAAAGTTTAATCGCAAGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGGGAGCTCATGTAGCGTTCGCACAAGACTAAAGGTGTTCCATGCCAAATCGTCAACACCTTACCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTATCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCCGATGATGTTCTTTAAGAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCATCAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCTTTATCGCAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTGAAGCAATTTTCCCAATGCGGATGAAGCCTTTGGAAGGGATGCANAGAGGGGTTCCGACCTGGAATAAAGGAAACAATCACAGACAGGTATGTTCATAGCANGGCTCTTCAGAAATTCAGTTATAGCTTTCAATGATCCAAGGGAAGAAGCTTGCACATAAACACCCCCCCTTGTCTCG] [+] EMBL CA763120 [TTTTTTTTTTTTTTTAAGGAGCAATCATGGGTCATCCAGATTAAGATTGCAAGTAGACATGGCCATACTTCGTCTCATACATACTTCTTCCAAAGTTTAATCGCAAGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGGGAGCTCATGTAGCGTTCGCACAAGACTAAAGGTGTTCCATGCCAAATCGTCAACACCTTACCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTATCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCCGATGATGTTCTTTAAGAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCATCAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCTTTATCGCAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTGAAGCAATTTTCCCAATGCGGATGAAGCCTTTGGAAGGGATGCANAGAGGGGTTCCGACCTGGAATAAAGGAAACAATCACAGACAGGTATGTTCATAGCANGGCTCTTCAGAAATTCAGTTATAGCTTTCAATGATCCAAGGGAAGAAGCTTGCACATAAACACCCCCCCTTGTCTCG] consensusID : consensus_2598#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 680 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTAAACTTAAAACATTTAAGGAGCAATCATGGGTCATCCAGATTAAAATTGCAAGTAAACATGGCCATACTTCGTCTCAAACATACTTCTTCCAAAGTTTAATCGCAGGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGGGGGCTCATGTAGCGTTCGCACAAAACTAAAGGTGTTCCACGCCAAATCGTCAACACCTTACCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTATCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCCGATAATGTTCTTTAAAAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCATCAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCTTTATCGAAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTGAAGCAATTTTCCCAATGCGGATAAGGCCTTTGGAAGGGATGCAAAGAGGGGTTCCGACCTGGAATAAAGGAAACAATCACAGACCGGTATGTTCATAGCAGGGCTCTTCAGAAATTCGGTTATAGCTTTCAATGATCCAA] [+] EMBL CA763121 [TTTTTTTTTTTTTTTTTTTTTTTAAACTTAAAACATTTAAGGAGCAATCATGGGTCATCCAGATTAAAATTGCAAGTAAACATGGCCATACTTCGTCTCAAACATACTTCTTCCAAAGTTTAATCGCAGGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGGGGGCTCATGTAGCGTTCGCACAAAACTAAAGGTGTTCCACGCCAAATCGTCAACACCTTACCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTATCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCCGATAATGTTCTTTAAAAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCATCAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCTTTATCGAAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTGAAGCAATTTTCCCAATGCGGATAAGGCCTTTGGAAGGGATGCAAAGAGGGGTTCCGACCTGGAATAAAGGAAACAATCACAGACCGGTATGTTCATAGCAGGGCTCTTCAGAAATTCGGTTATAGCTTTCAATGATCCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2598#0 -----------TTTTTTTTTTTT------------TTTAAGGAGCAATCATGGGTCATCC 37 consensus_2598#1 TTTTTTTTTTTTTTTTTTTTTTTAAACTTAAAACATTTAAGGAGCAATCATGGGTCATCC 60 ************ ************************* consensus_2598#0 AGATTAAGATTGCAAGTAGACATGGCCATACTTCGTCTCATACATACTTCTTCCAAAGTT 97 consensus_2598#1 AGATTAAAATTGCAAGTAAACATGGCCATACTTCGTCTCAAACATACTTCTTCCAAAGTT 120 ******* ********** ********************* ******************* consensus_2598#0 TAATCGCAAGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGG 157 consensus_2598#1 TAATCGCAGGGGCGCACTGTGTTCTGCAAGTACAACTAAACACAACCGTAAACACAATGG 180 ******** *************************************************** consensus_2598#0 GAGCTCATGTAGCGTTCGCACAAGACTAAAGGTGTTCCATGCCAAATCGTCAACACCTTA 217 consensus_2598#1 GGGCTCATGTAGCGTTCGCACAAAACTAAAGGTGTTCCACGCCAAATCGTCAACACCTTA 240 * ********************* *************** ******************** consensus_2598#0 CCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTA 277 consensus_2598#1 CCAACGTTACATGTAGTTATGTGAAATAACAAAGATGTTGCTGGCGTAACCCTCACGGTA 300 ************************************************************ consensus_2598#0 TCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCC 337 consensus_2598#1 TCTTGAACATGCTCTTCAGTGCTCGTAAAACAGCCCAGTCTTTCGTTGTCAGGTCATGCC 360 ************************************************************ consensus_2598#0 GATGATGTTCTTTAAGAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCAT 397 consensus_2598#1 GATAATGTTCTTTAAAAACATCAATCGACTCCTTTGTTATGTAGCTAACAAGCTCATCAT 420 *** *********** ******************************************** consensus_2598#0 CAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCT 457 consensus_2598#1 CAAGTCCAAATGTTCTACCAAAACTATTGTTTGCCTCGTCTTGGTTGCTCCCTACAATCT 480 ************************************************************ consensus_2598#0 TTATCGCAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTG 517 consensus_2598#1 TTATCGAAACCTTCTCTCCCTCTCTTGCCACATCAACTTGCTTATGGCTATTCTGGATTG 540 ****** ***************************************************** consensus_2598#0 AAGCAATTTTCCCAATGCGGATGAAGCCTTTGGAAGGGATGCANAGAGGGGTTCCGACCT 577 consensus_2598#1 AAGCAATTTTCCCAATGCGGATAAGGCCTTTGGAAGGGATGCAAAGAGGGGTTCCGACCT 600 ********************** * ****************** **************** consensus_2598#0 GGAATAAAGGAAACAATCACAGACAGGTATGTTCATAGCANGGCTCTTCAGAAATTCAGT 637 consensus_2598#1 GGAATAAAGGAAACAATCACAGACCGGTATGTTCATAGCAGGGCTCTTCAGAAATTCGGT 660 ************************ *************** **************** ** consensus_2598#0 TATAGCTTTCAATGATCCAAGGGAAGAAGCTTGCACATAAACACCCCCCCTTGTCTCG 695 consensus_2598#1 TATAGCTTTCAATGATCCAA-------------------------------------- 680 ******************** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||