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These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 26 cluster # 26       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_26#0 length = 315 sequences # 1  
consensus_26#1 length = 300 sequences # 1  

consensusID : consensus_26#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 315
fasta sequence
                              [AAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATNTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTCTCACCACGACGCGCTCCTCACCGTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCTCATGTCTGGACACTCGTACCTTCTCTCCANCTCCGCC]

[+] EMBL C72893               [AAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATNTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTCTCACCACGACGCGCTCCTCACCGTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCTCATGTCTGGACACTCGTACCTTCTCTCCANCTCCGCC]


>consensus_26#0 AAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCC TCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAG ATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATNTCCAGCCGCCGTGCCATC GCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTCTCACCACGACGCGCTCCTCACC GTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCTCATGTCTGGACACTCGTACCTT CTCTCCANCTCCGCC



consensusID : consensus_26#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 300
fasta sequence
                              [AAAAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAGATCTCCTTGATTTGGTGCAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATCTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCTTCCCTTCTCACCACGACGCGNTCCTCACCGTTCACTTCCGCNGCTTCAGGTCAAAGGGCTTTTTCCT]

[+] EMBL AU094846             [AAAAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAGATCTCCTTGATTTGGTGCAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATCTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCTTCCCTTCTCACCACGACGCGNTCCTCACCGTTCACTTCCGCNGCTTCAGGTCAAAGGGCTTTTTCCT]


>consensus_26#1 AAAAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCG CCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGG AGATCTCCTTGATTTGGTGCAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGAT CATCTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCTTCCCTTC TCACCACGACGCGNTCCTCACCGTTCACTTCCGCNGCTTCAGGTCAAAGGGCTTTTTCCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_26#0      --AAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCG 58
consensus_26#1      AAAAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCG 60
                      **********************************************************

consensus_26#0      CCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGG 118
consensus_26#1      CCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGG 120
                    ************************************************************

consensus_26#0      AGAT--------------------GATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGAT 158
consensus_26#1      AGATCTCCTTGATTTGGTGCAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGAT 180
                    ****                    ************************************

consensus_26#0      CATNTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTC 218
consensus_26#1      CATCTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCTTCCCTTC 240
                    *** ************************************************ *******

consensus_26#0      TCACCACGACGCGCTCCTCACCGTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCT 278
consensus_26#1      TCACCACGACGCGNTCCTCACCGTTCACTTCCGCNGCTTCAGGTCAAAGGGCTTTTTCCT 300
                    ************* ************** ***** ** ******** ***** ** ****

consensus_26#0      CATGTCTGGACACTCGTACCTTCTCTCCANCTCCGCC 315
consensus_26#1      -------------------------------------
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)