These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_26#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 315 fasta sequence [AAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATNTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTCTCACCACGACGCGCTCCTCACCGTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCTCATGTCTGGACACTCGTACCTTCTCTCCANCTCCGCC] [+] EMBL C72893 [AAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATNTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTCTCACCACGACGCGCTCCTCACCGTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCTCATGTCTGGACACTCGTACCTTCTCTCCANCTCCGCC] consensusID : consensus_26#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 300 fasta sequence [AAAAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAGATCTCCTTGATTTGGTGCAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATCTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCTTCCCTTCTCACCACGACGCGNTCCTCACCGTTCACTTCCGCNGCTTCAGGTCAAAGGGCTTTTTCCT] [+] EMBL AU094846 [AAAAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCGCCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGGAGATCTCCTTGATTTGGTGCAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGATCATCTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCTTCCCTTCTCACCACGACGCGNTCCTCACCGTTCACTTCCGCNGCTTCAGGTCAAAGGGCTTTTTCCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_26#0 --AAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCG 58 consensus_26#1 AAAAAAAAGAGGAAAAGCAGCGAGCGAGAGACCGGGGGACGGAAATGGTCGTCGCCGTCG 60 ********************************************************** consensus_26#0 CCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGG 118 consensus_26#1 CCTCACCTTCGTCGGCGCCGGGGCCGGGCGCCGCCGGCCGCCCCCACCCGACCTACAAGG 120 ************************************************************ consensus_26#0 AGAT--------------------GATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGAT 158 consensus_26#1 AGATCTCCTTGATTTGGTGCAGATGATCCTGCGGGCGCTCAAGGAGCTTCCAGATCCGAT 180 **** ************************************ consensus_26#0 CATNTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCCTCCCTTC 218 consensus_26#1 CATCTCCAGCCGCCGTGCCATCGCCAAGTACATCTCCGACAACTTCTCCGGCTTCCCTTC 240 *** ************************************************ ******* consensus_26#0 TCACCACGACGCGCTCCTCACCGTTCACCTCCGCCGCCTCAGGTCACAGGGCCTTCTCCT 278 consensus_26#1 TCACCACGACGCGNTCCTCACCGTTCACTTCCGCNGCTTCAGGTCAAAGGGCTTTTTCCT 300 ************* ************** ***** ** ******** ***** ** **** consensus_26#0 CATGTCTGGACACTCGTACCTTCTCTCCANCTCCGCC 315 consensus_26#1 ------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||