These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1749 fasta sequence [ATGGGTTGCGTAGCCGTAGCTTTCCCACCATTTCCTTCTCTCCGAAGCCTCCTCCTCTCCGCTTCCTCCCGCGAAACCAAATTCCAAAGCATTTGATCGAATTTCTCCCAAACTTTTCCAGCGTTTTCAATTTCGCCCCGATTTCGGTTCGAAAACCCCTCGCGAATTCATTTCAAACTCGTCCGAGAGCGCAATGGAGCACGTGTTCGCCGTCGACGAGATCCCCGACCCGCTGTGGGCTCCGCCGCCGCCGGTGCAGCCGGCGGCGGCCGCCGGAGTAGATGACGTCGGCGCGGTGAGCGGCGGCGGGTTGCTGGAGCGGTGCCCGTCGGGGTGGAACCTCGAGAGGTTTCTGGAGGAGCTCGACGGCGTCCCTGCACCGGCGGCGAGCCCGGACGGCGCGGCGATTTACCCTAGCCCGATGCCGGCGGCGGCGGCGGAGGCGGCGGCGCGCTGGAGTAGGGGCTACGGCGATCGTGAGGCGGTGGGGGTGATGCCCATGCCCGCGGCCGCGCTTCCGGCGGCGCCGGCGAGCGCGGCGATGGACCCCGTGGAGTACAACGCGATGCTGAAGCGGAAGCTGGACGAGGACCTCGCCACCGTCGCCATGTGGAGGGCCTCTGGTGCAATACATTCTGAGAGTCCTCTAGGCAATAAAACATCACTGAGTATAGTTGGTTCCATCCTGAGTTCACAGAAGTGCATTGAAGGTAACGGGATACTAGTGCAGACCAAGTTAAGTCCTGGCCCAAATGGAGGATCAGGCCCATATGTAAATCAAAATACAGATGCTCATGCCAAGCAAGCTACGAGTGGTTCCTCAAGGGAGCCATCACCATCAGAGGATGATGATATGGAAGGAGATGCAGAGGCAATGGGAAATATGATCCTTGATGAAGAAGATAAAGTGAAGAAAAGGAAGGAATCCAACCGGGAGTCAGCTAGACGCTCAAGAAGCAGAAAGGCAGCTCGCCTAAAAGACCTGGAGGAGCAGGTATCACTATTAAGGGTTGAAAACTCTTCTCTGTTGAGGCGTCTTGCTGATGCAAATCAGAAGTACAGTGCTGCTGCTATTGACAATAGGGTACTAATGGCAGACATTGAAGCCCTAAGAGCAAAGGTGAGGATGGCAGAGGAGAGTGTGAAGATGGTTACAGGGGCTAGACAACTTCACCAGGCCATTCCTGACATGCAATCTCCCCTCAATGTCAACTCTGATGCTTCTGTGCCGATCCAGAACAACAACCCAATGAACTACTTCTCCAACGCTAACAATGCCGGTGTTAACAGCTTCATGCACCAGGTTTCTCCAGCGTTCCAGATTGTGGATTCTGTCGAGAAGATTGACCCAACAGATCCAGTGCAGCTGCAGCAGCAACAGATGGCGAGCTTGCAGCATCTTCAGAATAGAGCTTGTGGTGGCGGCGCAAGTTCGAATGAATATACAGCATGGGGATCGTCTCTGATGGATGCAAATGAGCTTGTCAACATGGAGCTTCAGTAGTAGGAGCATATCCTAACAACATGATGAGAGCATTTGGAGGTGCAAATTTGCAACCTGCAAATGCTGTTTTGTAGTAGTAGTTGTTGTCGCTGTTTTTGTCTGAAACTGTAGTTTCTATGGATTTTGGACTTGCTGAGGAACATCTGCGGCTGTTGTTGTTTCAAATTGAGAAAATGAGGGACAATGGGACATGGTGGTCTCCCTTAATATAGCGAAAAATGGTTGGAATAAAAAAAAAAAAAAAA] [+] EMBL AB053472 [ATGGGTTGCGTAGCCGTAGCTTTCCCACCATTTCCTTCTCTCCGAAGCCTCCTCCTCTCCGCTTCCTCCCGCGAAACCAAATTCCAAAGCATTTGATCGAATTTCTCCCAAACTTTTCCAGCGTTTTCAATTTCGCCCCGATTTCGGTTCGAAAACCCCTCGCGAATTCATTTCAAACTCGTCCGAGAGCGCAATGGAGCACGTGTTCGCCGTCGACGAGATCCCCGACCCGCTGTGGGCTCCGCCGCCGCCGGTGCAGCCGGCGGCGGCCGCCGGAGTAGATGACGTCGGCGCGGTGAGCGGCGGCGGGTTGCTGGAGCGGTGCCCGTCGGGGTGGAACCTCGAGAGGTTTCTGGAGGAGCTCGACGGCGTCCCTGCACCGGCGGCGAGCCCGGACGGCGCGGCGATTTACCCTAGCCCGATGCCGGCGGCGGCGGCGGAGGCGGCGGCGCGCTGGAGTAGGGGCTACGGCGATCGTGAGGCGGTGGGGGTGATGCCCATGCCCGCGGCCGCGCTTCCGGCGGCGCCGGCGAGCGCGGCGATGGACCCCGTGGAGTACAACGCGATGCTGAAGCGGAAGCTGGACGAGGACCTCGCCACCGTCGCCATGTGGAGGGCCTCTGGTGCAATACATTCTGAGAGTCCTCTAGGCAATAAAACATCACTGAGTATAGTTGGTTCCATCCTGAGTTCACAGAAGTGCATTGAAGGTAACGGGATACTAGTGCAGACCAAGTTAAGTCCTGGCCCAAATGGAGGATCAGGCCCATATGTAAATCAAAATACAGATGCTCATGCCAAGCAAGCTACGAGTGGTTCCTCAAGGGAGCCATCACCATCAGAGGATGATGATATGGAAGGAGATGCAGAGGCAATGGGAAATATGATCCTTGATGAAGAAGATAAAGTGAAGAAAAGGAAGGAATCCAACCGGGAGTCAGCTAGACGCTCAAGAAGCAGAAAGGCAGCTCGCCTAAAAGACCTGGAGGAGCAGGTATCACTATTAAGGGTTGAAAACTCTTCTCTGTTGAGGCGTCTTGCTGATGCAAATCAGAAGTACAGTGCTGCTGCTATTGACAATAGGGTACTAATGGCAGACATTGAAGCCCTAAGAGCAAAGGTGAGGATGGCAGAGGAGAGTGTGAAGATGGTTACAGGGGCTAGACAACTTCACCAGGCCATTCCTGACATGCAATCTCCCCTCAATGTCAACTCTGATGCTTCTGTGCCGATCCAGAACAACAACCCAATGAACTACTTCTCCAACGCTAACAATGCCGGTGTTAACAGCTTCATGCACCAGGTTTCTCCAGCGTTCCAGATTGTGGATTCTGTCGAGAAGATTGACCCAACAGATCCAGTGCAGCTGCAGCAGCAACAGATGGCGAGCTTGCAGCATCTTCAGAATAGAGCTTGTGGTGGCGGCGCAAGTTCGAATGAATATACAGCATGGGGATCGTCTCTGATGGATGCAAATGAGCTTGTCAACATGGAGCTTCAGTAGTAGGAGCATATCCTAACAACATGATGAGAGCATTTGGAGGTGCAAATTTGCAACCTGCAAATGCTGTTTTGTAGTAGTAGTTGTTGTCGCTGTTTTTGTCTGAAACTGTAGTTTCTATGGATTTTGGACTTGCTGAGGAACATCTGCGGCTGTTGTTGTTTCAAATTGAGAAAATGAGGGACAATGGGACATGGTGGTCTCCCTTAATATAGCGAAAAATGGTTGGAATAAAAAAAAAAAAAAAA] consensusID : consensus_2616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence [ACCAGGCGCACGTGCTACTCAACAGTAGGGCGCTTACTGCACGCCATCGGAGTCGTTAGTAGCAAGCGTCAGCATGGCACGGTAGAGGTGAACTATGGTTCAGCGGCTAACCAACTTCCCCAGGCCATTCCTGACATGCAATCTCCCCTCAATATCAACTTTGATGCTTCTGCGCCGATCCAGAGCAACAACCCAATGAACTACTTCTCCAACGCTAACAATGCCGGTGTTAACAGCTTCATGCACCAGGTTTTTCCAGCGTTCCAGATTGTGGATTCTGTCGAGAAGATTGACCCAACAGATCCAGTGCAGCTGCAGCAGCAACAGATGGCGAGCTTGCAGCATCTTCAGAATGGAGCTTGTGGTGGCAGCGCAAGTTCGAATGGATATACAGCATGGGGATCGTCTCTGATGGATGCAAGTGAGCTTGTCAACATGGAGCTTCAGTAGTAGGAGCATATCCTAACAACATGATGAGAGCATTTGGAGGTGCAAATTTGCAACCTGCAAATGCTGTTTTGTAGTAGTAGTTGTCGTCGCTGTTTTTGTCTGAAACTGTAGTTTCTATGGATTTTGGACTTGCTGAGGAACATTTGCGGCTGTTGTTGTTTCAAATTGAGAAAATGAGGGACAATGGGACATGGTGGTCTCCCTTAATATAAAAAAAAAAAAAAAAA] [-] EMBL CA763177 [ACCAGGCGCACGTGCTACTCAACAGTAGGGCGCTTACTGCACGCCATCGGAGTCGTTAGTAGCAAGCGTCAGCATGGCACGGTAGAGGTGAACTATGGTTCAGCGGCTAACCAACTTCCCCAGGCCATTCCTGACATGCAATCTCCCCTCAATATCAACTTTGATGCTTCTGCGCCGATCCAGAGCAACAACCCAATGAACTACTTCTCCAACGCTAACAATGCCGGTGTTAACAGCTTCATGCACCAGGTTTTTCCAGCGTTCCAGATTGTGGATTCTGTCGAGAAGATTGACCCAACAGATCCAGTGCAGCTGCAGCAGCAACAGATGGCGAGCTTGCAGCATCTTCAGAATGGAGCTTGTGGTGGCAGCGCAAGTTCGAATGGATATACAGCATGGGGATCGTCTCTGATGGATGCAAGTGAGCTTGTCAACATGGAGCTTCAGTAGTAGGAGCATATCCTAACAACATGATGAGAGCATTTGGAGGTGCAAATTTGCAACCTGCAAATGCTGTTTTGTAGTAGTAGTTGTCGTCGCTGTTTTTGTCTGAAACTGTAGTTTCTATGGATTTTGGACTTGCTGAGGAACATTTGCGGCTGTTGTTGTTTCAAATTGAGAAAATGAGGGACAATGGGACATGGTGGTCTCCCTTAATATAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2616#0 ATGGGTTGCGTAGCCGTAGCTTTCCCACCATTTCCTTCTCTCCGAAGCCTCCTCCTCTCC 60 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 GCTTCCTCCCGCGAAACCAAATTCCAAAGCATTTGATCGAATTTCTCCCAAACTTTTCCA 120 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 GCGTTTTCAATTTCGCCCCGATTTCGGTTCGAAAACCCCTCGCGAATTCATTTCAAACTC 180 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 GTCCGAGAGCGCAATGGAGCACGTGTTCGCCGTCGACGAGATCCCCGACCCGCTGTGGGC 240 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 TCCGCCGCCGCCGGTGCAGCCGGCGGCGGCCGCCGGAGTAGATGACGTCGGCGCGGTGAG 300 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 CGGCGGCGGGTTGCTGGAGCGGTGCCCGTCGGGGTGGAACCTCGAGAGGTTTCTGGAGGA 360 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 GCTCGACGGCGTCCCTGCACCGGCGGCGAGCCCGGACGGCGCGGCGATTTACCCTAGCCC 420 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 GATGCCGGCGGCGGCGGCGGAGGCGGCGGCGCGCTGGAGTAGGGGCTACGGCGATCGTGA 480 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 GGCGGTGGGGGTGATGCCCATGCCCGCGGCCGCGCTTCCGGCGGCGCCGGCGAGCGCGGC 540 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 GATGGACCCCGTGGAGTACAACGCGATGCTGAAGCGGAAGCTGGACGAGGACCTCGCCAC 600 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 CGTCGCCATGTGGAGGGCCTCTGGTGCAATACATTCTGAGAGTCCTCTAGGCAATAAAAC 660 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 ATCACTGAGTATAGTTGGTTCCATCCTGAGTTCACAGAAGTGCATTGAAGGTAACGGGAT 720 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 ACTAGTGCAGACCAAGTTAAGTCCTGGCCCAAATGGAGGATCAGGCCCATATGTAAATCA 780 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 AAATACAGATGCTCATGCCAAGCAAGCTACGAGTGGTTCCTCAAGGGAGCCATCACCATC 840 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 AGAGGATGATGATATGGAAGGAGATGCAGAGGCAATGGGAAATATGATCCTTGATGAAGA 900 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 AGATAAAGTGAAGAAAAGGAAGGAATCCAACCGGGAGTCAGCTAGACGCTCAAGAAGCAG 960 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 AAAGGCAGCTCGCCTAAAAGACCTGGAGGAGCAGGTATCACTATTAAGGGTTGAAAACTC 1020 consensus_2616#1 ------------------------------------------------------------ consensus_2616#0 TTCTCTGTTGAGGCGTCTTGCTGATGCAAATCAGAAGTACAGTGCTGCTGCTATTGACAA 1080 consensus_2616#1 -----------------------------ACCAGGCGCAC-GTGCTACT-----CAACAG 25 * *** * ** ***** ** *** consensus_2616#0 TAGGGTACTAATGGCA-GACATTGAAGCCCTAAG-AGCAAAGGTGAGGATGGCAGAGGAG 1138 consensus_2616#1 TAGGGCGCTTACTGCACGCCATCGGAGTCGTTAGTAGCAAGCGTCAGCATGGCACGGTAG 85 ***** ** * *** * *** * ** * * ** ***** ** ** ****** * ** consensus_2616#0 AGTGTGAAGATGGTTACAGGGGCTAGACAACTTCACCAGGCCATTCCTGACATGCAATCT 1198 consensus_2616#1 AGGTGAACTATGGTT-CAGCGGCTAACCAACTTCCCCAGGCCATTCCTGACATGCAATCT 144 ** * ****** *** ***** ******* ************************* consensus_2616#0 CCCCTCAATGTCAACTCTGATGCTTCTGTGCCGATCCAGAACAACAACCCAATGAACTAC 1258 consensus_2616#1 CCCCTCAATATCAACTTTGATGCTTCTGCGCCGATCCAGAGCAACAACCCAATGAACTAC 204 ********* ****** *********** *********** ******************* consensus_2616#0 TTCTCCAACGCTAACAATGCCGGTGTTAACAGCTTCATGCACCAGGTTTCTCCAGCGTTC 1318 consensus_2616#1 TTCTCCAACGCTAACAATGCCGGTGTTAACAGCTTCATGCACCAGGTTTTTCCAGCGTTC 264 ************************************************* ********** consensus_2616#0 CAGATTGTGGATTCTGTCGAGAAGATTGACCCAACAGATCCAGTGCAGCTGCAGCAGCAA 1378 consensus_2616#1 CAGATTGTGGATTCTGTCGAGAAGATTGACCCAACAGATCCAGTGCAGCTGCAGCAGCAA 324 ************************************************************ consensus_2616#0 CAGATGGCGAGCTTGCAGCATCTTCAGAATAGAGCTTGTGGTGGCGGCGCAAGTTCGAAT 1438 consensus_2616#1 CAGATGGCGAGCTTGCAGCATCTTCAGAATGGAGCTTGTGGTGGCAGCGCAAGTTCGAAT 384 ****************************** ************** ************** consensus_2616#0 GAATATACAGCATGGGGATCGTCTCTGATGGATGCAAATGAGCTTGTCAACATGGAGCTT 1498 consensus_2616#1 GGATATACAGCATGGGGATCGTCTCTGATGGATGCAAGTGAGCTTGTCAACATGGAGCTT 444 * *********************************** ********************** consensus_2616#0 CAGTAGTAGGAGCATATCCTAACAACATGATGAGAGCATTTGGAGGTGCAAATTTGCAAC 1558 consensus_2616#1 CAGTAGTAGGAGCATATCCTAACAACATGATGAGAGCATTTGGAGGTGCAAATTTGCAAC 504 ************************************************************ consensus_2616#0 CTGCAAATGCTGTTTTGTAGTAGTAGTTGTTGTCGCTGTTTTTGTCTGAAACTGTAGTTT 1618 consensus_2616#1 CTGCAAATGCTGTTTTGTAGTAGTAGTTGTCGTCGCTGTTTTTGTCTGAAACTGTAGTTT 564 ****************************** ***************************** consensus_2616#0 CTATGGATTTTGGACTTGCTGAGGAACATCTGCGGCTGTTGTTGTTTCAAATTGAGAAAA 1678 consensus_2616#1 CTATGGATTTTGGACTTGCTGAGGAACATTTGCGGCTGTTGTTGTTTCAAATTGAGAAAA 624 ***************************** ****************************** consensus_2616#0 TGAGGGACAATGGGACATGGTGGTCTCCCTTAATATAGCGAAAAATGGTTGGAATAAAAA 1738 consensus_2616#1 TGAGGGACAATGGGACATGGTGGTCTCCCTTAATATAAAAAAAAAAAAAAAAA------- 677 ************************************* ***** * consensus_2616#0 AAAAAAAAAAA 1749 consensus_2616#1 ----------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||