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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2616#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1749 fasta sequence
[ATGGGTTGCGTAGCCGTAGCTTTCCCACCATTTCCTTCTCTCCGAAGCCTCCTCCTCTCCGCTTCCTCCCGCGAAACCAAATTCCAAAGCATTTGATCGAATTTCTCCCAAACTTTTCCAGCGTTTTCAATTTCGCCCCGATTTCGGTTCGAAAACCCCTCGCGAATTCATTTCAAACTCGTCCGAGAGCGCAATGGAGCACGTGTTCGCCGTCGACGAGATCCCCGACCCGCTGTGGGCTCCGCCGCCGCCGGTGCAGCCGGCGGCGGCCGCCGGAGTAGATGACGTCGGCGCGGTGAGCGGCGGCGGGTTGCTGGAGCGGTGCCCGTCGGGGTGGAACCTCGAGAGGTTTCTGGAGGAGCTCGACGGCGTCCCTGCACCGGCGGCGAGCCCGGACGGCGCGGCGATTTACCCTAGCCCGATGCCGGCGGCGGCGGCGGAGGCGGCGGCGCGCTGGAGTAGGGGCTACGGCGATCGTGAGGCGGTGGGGGTGATGCCCATGCCCGCGGCCGCGCTTCCGGCGGCGCCGGCGAGCGCGGCGATGGACCCCGTGGAGTACAACGCGATGCTGAAGCGGAAGCTGGACGAGGACCTCGCCACCGTCGCCATGTGGAGGGCCTCTGGTGCAATACATTCTGAGAGTCCTCTAGGCAATAAAACATCACTGAGTATAGTTGGTTCCATCCTGAGTTCACAGAAGTGCATTGAAGGTAACGGGATACTAGTGCAGACCAAGTTAAGTCCTGGCCCAAATGGAGGATCAGGCCCATATGTAAATCAAAATACAGATGCTCATGCCAAGCAAGCTACGAGTGGTTCCTCAAGGGAGCCATCACCATCAGAGGATGATGATATGGAAGGAGATGCAGAGGCAATGGGAAATATGATCCTTGATGAAGAAGATAAAGTGAAGAAAAGGAAGGAATCCAACCGGGAGTCAGCTAGACGCTCAAGAAGCAGAAAGGCAGCTCGCCTAAAAGACCTGGAGGAGCAGGTATCACTATTAAGGGTTGAAAACTCTTCTCTGTTGAGGCGTCTTGCTGATGCAAATCAGAAGTACAGTGCTGCTGCTATTGACAATAGGGTACTAATGGCAGACATTGAAGCCCTAAGAGCAAAGGTGAGGATGGCAGAGGAGAGTGTGAAGATGGTTACAGGGGCTAGACAACTTCACCAGGCCATTCCTGACATGCAATCTCCCCTCAATGTCAACTCTGATGCTTCTGTGCCGATCCAGAACAACAACCCAATGAACTACTTCTCCAACGCTAACAATGCCGGTGTTAACAGCTTCATGCACCAGGTTTCTCCAGCGTTCCAGATTGTGGATTCTGTCGAGAAGATTGACCCAACAGATCCAGTGCAGCTGCAGCAGCAACAGATGGCGAGCTTGCAGCATCTTCAGAATAGAGCTTGTGGTGGCGGCGCAAGTTCGAATGAATATACAGCATGGGGATCGTCTCTGATGGATGCAAATGAGCTTGTCAACATGGAGCTTCAGTAGTAGGAGCATATCCTAACAACATGATGAGAGCATTTGGAGGTGCAAATTTGCAACCTGCAAATGCTGTTTTGTAGTAGTAGTTGTTGTCGCTGTTTTTGTCTGAAACTGTAGTTTCTATGGATTTTGGACTTGCTGAGGAACATCTGCGGCTGTTGTTGTTTCAAATTGAGAAAATGAGGGACAATGGGACATGGTGGTCTCCCTTAATATAGCGAAAAATGGTTGGAATAAAAAAAAAAAAAAAA]
[+] EMBL AB053472 [ATGGGTTGCGTAGCCGTAGCTTTCCCACCATTTCCTTCTCTCCGAAGCCTCCTCCTCTCCGCTTCCTCCCGCGAAACCAAATTCCAAAGCATTTGATCGAATTTCTCCCAAACTTTTCCAGCGTTTTCAATTTCGCCCCGATTTCGGTTCGAAAACCCCTCGCGAATTCATTTCAAACTCGTCCGAGAGCGCAATGGAGCACGTGTTCGCCGTCGACGAGATCCCCGACCCGCTGTGGGCTCCGCCGCCGCCGGTGCAGCCGGCGGCGGCCGCCGGAGTAGATGACGTCGGCGCGGTGAGCGGCGGCGGGTTGCTGGAGCGGTGCCCGTCGGGGTGGAACCTCGAGAGGTTTCTGGAGGAGCTCGACGGCGTCCCTGCACCGGCGGCGAGCCCGGACGGCGCGGCGATTTACCCTAGCCCGATGCCGGCGGCGGCGGCGGAGGCGGCGGCGCGCTGGAGTAGGGGCTACGGCGATCGTGAGGCGGTGGGGGTGATGCCCATGCCCGCGGCCGCGCTTCCGGCGGCGCCGGCGAGCGCGGCGATGGACCCCGTGGAGTACAACGCGATGCTGAAGCGGAAGCTGGACGAGGACCTCGCCACCGTCGCCATGTGGAGGGCCTCTGGTGCAATACATTCTGAGAGTCCTCTAGGCAATAAAACATCACTGAGTATAGTTGGTTCCATCCTGAGTTCACAGAAGTGCATTGAAGGTAACGGGATACTAGTGCAGACCAAGTTAAGTCCTGGCCCAAATGGAGGATCAGGCCCATATGTAAATCAAAATACAGATGCTCATGCCAAGCAAGCTACGAGTGGTTCCTCAAGGGAGCCATCACCATCAGAGGATGATGATATGGAAGGAGATGCAGAGGCAATGGGAAATATGATCCTTGATGAAGAAGATAAAGTGAAGAAAAGGAAGGAATCCAACCGGGAGTCAGCTAGACGCTCAAGAAGCAGAAAGGCAGCTCGCCTAAAAGACCTGGAGGAGCAGGTATCACTATTAAGGGTTGAAAACTCTTCTCTGTTGAGGCGTCTTGCTGATGCAAATCAGAAGTACAGTGCTGCTGCTATTGACAATAGGGTACTAATGGCAGACATTGAAGCCCTAAGAGCAAAGGTGAGGATGGCAGAGGAGAGTGTGAAGATGGTTACAGGGGCTAGACAACTTCACCAGGCCATTCCTGACATGCAATCTCCCCTCAATGTCAACTCTGATGCTTCTGTGCCGATCCAGAACAACAACCCAATGAACTACTTCTCCAACGCTAACAATGCCGGTGTTAACAGCTTCATGCACCAGGTTTCTCCAGCGTTCCAGATTGTGGATTCTGTCGAGAAGATTGACCCAACAGATCCAGTGCAGCTGCAGCAGCAACAGATGGCGAGCTTGCAGCATCTTCAGAATAGAGCTTGTGGTGGCGGCGCAAGTTCGAATGAATATACAGCATGGGGATCGTCTCTGATGGATGCAAATGAGCTTGTCAACATGGAGCTTCAGTAGTAGGAGCATATCCTAACAACATGATGAGAGCATTTGGAGGTGCAAATTTGCAACCTGCAAATGCTGTTTTGTAGTAGTAGTTGTTGTCGCTGTTTTTGTCTGAAACTGTAGTTTCTATGGATTTTGGACTTGCTGAGGAACATCTGCGGCTGTTGTTGTTTCAAATTGAGAAAATGAGGGACAATGGGACATGGTGGTCTCCCTTAATATAGCGAAAAATGGTTGGAATAAAAAAAAAAAAAAAA]
consensusID : consensus_2616#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 677 fasta sequence
[ACCAGGCGCACGTGCTACTCAACAGTAGGGCGCTTACTGCACGCCATCGGAGTCGTTAGTAGCAAGCGTCAGCATGGCACGGTAGAGGTGAACTATGGTTCAGCGGCTAACCAACTTCCCCAGGCCATTCCTGACATGCAATCTCCCCTCAATATCAACTTTGATGCTTCTGCGCCGATCCAGAGCAACAACCCAATGAACTACTTCTCCAACGCTAACAATGCCGGTGTTAACAGCTTCATGCACCAGGTTTTTCCAGCGTTCCAGATTGTGGATTCTGTCGAGAAGATTGACCCAACAGATCCAGTGCAGCTGCAGCAGCAACAGATGGCGAGCTTGCAGCATCTTCAGAATGGAGCTTGTGGTGGCAGCGCAAGTTCGAATGGATATACAGCATGGGGATCGTCTCTGATGGATGCAAGTGAGCTTGTCAACATGGAGCTTCAGTAGTAGGAGCATATCCTAACAACATGATGAGAGCATTTGGAGGTGCAAATTTGCAACCTGCAAATGCTGTTTTGTAGTAGTAGTTGTCGTCGCTGTTTTTGTCTGAAACTGTAGTTTCTATGGATTTTGGACTTGCTGAGGAACATTTGCGGCTGTTGTTGTTTCAAATTGAGAAAATGAGGGACAATGGGACATGGTGGTCTCCCTTAATATAAAAAAAAAAAAAAAAA]
[-] EMBL CA763177 [ACCAGGCGCACGTGCTACTCAACAGTAGGGCGCTTACTGCACGCCATCGGAGTCGTTAGTAGCAAGCGTCAGCATGGCACGGTAGAGGTGAACTATGGTTCAGCGGCTAACCAACTTCCCCAGGCCATTCCTGACATGCAATCTCCCCTCAATATCAACTTTGATGCTTCTGCGCCGATCCAGAGCAACAACCCAATGAACTACTTCTCCAACGCTAACAATGCCGGTGTTAACAGCTTCATGCACCAGGTTTTTCCAGCGTTCCAGATTGTGGATTCTGTCGAGAAGATTGACCCAACAGATCCAGTGCAGCTGCAGCAGCAACAGATGGCGAGCTTGCAGCATCTTCAGAATGGAGCTTGTGGTGGCAGCGCAAGTTCGAATGGATATACAGCATGGGGATCGTCTCTGATGGATGCAAGTGAGCTTGTCAACATGGAGCTTCAGTAGTAGGAGCATATCCTAACAACATGATGAGAGCATTTGGAGGTGCAAATTTGCAACCTGCAAATGCTGTTTTGTAGTAGTAGTTGTCGTCGCTGTTTTTGTCTGAAACTGTAGTTTCTATGGATTTTGGACTTGCTGAGGAACATTTGCGGCTGTTGTTGTTTCAAATTGAGAAAATGAGGGACAATGGGACATGGTGGTCTCCCTTAATATAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2616#0 ATGGGTTGCGTAGCCGTAGCTTTCCCACCATTTCCTTCTCTCCGAAGCCTCCTCCTCTCC 60
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 GCTTCCTCCCGCGAAACCAAATTCCAAAGCATTTGATCGAATTTCTCCCAAACTTTTCCA 120
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 GCGTTTTCAATTTCGCCCCGATTTCGGTTCGAAAACCCCTCGCGAATTCATTTCAAACTC 180
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 GTCCGAGAGCGCAATGGAGCACGTGTTCGCCGTCGACGAGATCCCCGACCCGCTGTGGGC 240
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 TCCGCCGCCGCCGGTGCAGCCGGCGGCGGCCGCCGGAGTAGATGACGTCGGCGCGGTGAG 300
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 CGGCGGCGGGTTGCTGGAGCGGTGCCCGTCGGGGTGGAACCTCGAGAGGTTTCTGGAGGA 360
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 GCTCGACGGCGTCCCTGCACCGGCGGCGAGCCCGGACGGCGCGGCGATTTACCCTAGCCC 420
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 GATGCCGGCGGCGGCGGCGGAGGCGGCGGCGCGCTGGAGTAGGGGCTACGGCGATCGTGA 480
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 GGCGGTGGGGGTGATGCCCATGCCCGCGGCCGCGCTTCCGGCGGCGCCGGCGAGCGCGGC 540
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 GATGGACCCCGTGGAGTACAACGCGATGCTGAAGCGGAAGCTGGACGAGGACCTCGCCAC 600
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 CGTCGCCATGTGGAGGGCCTCTGGTGCAATACATTCTGAGAGTCCTCTAGGCAATAAAAC 660
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 ATCACTGAGTATAGTTGGTTCCATCCTGAGTTCACAGAAGTGCATTGAAGGTAACGGGAT 720
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 ACTAGTGCAGACCAAGTTAAGTCCTGGCCCAAATGGAGGATCAGGCCCATATGTAAATCA 780
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 AAATACAGATGCTCATGCCAAGCAAGCTACGAGTGGTTCCTCAAGGGAGCCATCACCATC 840
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 AGAGGATGATGATATGGAAGGAGATGCAGAGGCAATGGGAAATATGATCCTTGATGAAGA 900
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 AGATAAAGTGAAGAAAAGGAAGGAATCCAACCGGGAGTCAGCTAGACGCTCAAGAAGCAG 960
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 AAAGGCAGCTCGCCTAAAAGACCTGGAGGAGCAGGTATCACTATTAAGGGTTGAAAACTC 1020
consensus_2616#1 ------------------------------------------------------------
consensus_2616#0 TTCTCTGTTGAGGCGTCTTGCTGATGCAAATCAGAAGTACAGTGCTGCTGCTATTGACAA 1080
consensus_2616#1 -----------------------------ACCAGGCGCAC-GTGCTACT-----CAACAG 25
* *** * ** ***** ** ***
consensus_2616#0 TAGGGTACTAATGGCA-GACATTGAAGCCCTAAG-AGCAAAGGTGAGGATGGCAGAGGAG 1138
consensus_2616#1 TAGGGCGCTTACTGCACGCCATCGGAGTCGTTAGTAGCAAGCGTCAGCATGGCACGGTAG 85
***** ** * *** * *** * ** * * ** ***** ** ** ****** * **
consensus_2616#0 AGTGTGAAGATGGTTACAGGGGCTAGACAACTTCACCAGGCCATTCCTGACATGCAATCT 1198
consensus_2616#1 AGGTGAACTATGGTT-CAGCGGCTAACCAACTTCCCCAGGCCATTCCTGACATGCAATCT 144
** * ****** *** ***** ******* *************************
consensus_2616#0 CCCCTCAATGTCAACTCTGATGCTTCTGTGCCGATCCAGAACAACAACCCAATGAACTAC 1258
consensus_2616#1 CCCCTCAATATCAACTTTGATGCTTCTGCGCCGATCCAGAGCAACAACCCAATGAACTAC 204
********* ****** *********** *********** *******************
consensus_2616#0 TTCTCCAACGCTAACAATGCCGGTGTTAACAGCTTCATGCACCAGGTTTCTCCAGCGTTC 1318
consensus_2616#1 TTCTCCAACGCTAACAATGCCGGTGTTAACAGCTTCATGCACCAGGTTTTTCCAGCGTTC 264
************************************************* **********
consensus_2616#0 CAGATTGTGGATTCTGTCGAGAAGATTGACCCAACAGATCCAGTGCAGCTGCAGCAGCAA 1378
consensus_2616#1 CAGATTGTGGATTCTGTCGAGAAGATTGACCCAACAGATCCAGTGCAGCTGCAGCAGCAA 324
************************************************************
consensus_2616#0 CAGATGGCGAGCTTGCAGCATCTTCAGAATAGAGCTTGTGGTGGCGGCGCAAGTTCGAAT 1438
consensus_2616#1 CAGATGGCGAGCTTGCAGCATCTTCAGAATGGAGCTTGTGGTGGCAGCGCAAGTTCGAAT 384
****************************** ************** **************
consensus_2616#0 GAATATACAGCATGGGGATCGTCTCTGATGGATGCAAATGAGCTTGTCAACATGGAGCTT 1498
consensus_2616#1 GGATATACAGCATGGGGATCGTCTCTGATGGATGCAAGTGAGCTTGTCAACATGGAGCTT 444
* *********************************** **********************
consensus_2616#0 CAGTAGTAGGAGCATATCCTAACAACATGATGAGAGCATTTGGAGGTGCAAATTTGCAAC 1558
consensus_2616#1 CAGTAGTAGGAGCATATCCTAACAACATGATGAGAGCATTTGGAGGTGCAAATTTGCAAC 504
************************************************************
consensus_2616#0 CTGCAAATGCTGTTTTGTAGTAGTAGTTGTTGTCGCTGTTTTTGTCTGAAACTGTAGTTT 1618
consensus_2616#1 CTGCAAATGCTGTTTTGTAGTAGTAGTTGTCGTCGCTGTTTTTGTCTGAAACTGTAGTTT 564
****************************** *****************************
consensus_2616#0 CTATGGATTTTGGACTTGCTGAGGAACATCTGCGGCTGTTGTTGTTTCAAATTGAGAAAA 1678
consensus_2616#1 CTATGGATTTTGGACTTGCTGAGGAACATTTGCGGCTGTTGTTGTTTCAAATTGAGAAAA 624
***************************** ******************************
consensus_2616#0 TGAGGGACAATGGGACATGGTGGTCTCCCTTAATATAGCGAAAAATGGTTGGAATAAAAA 1738
consensus_2616#1 TGAGGGACAATGGGACATGGTGGTCTCCCTTAATATAAAAAAAAAAAAAAAAA------- 677
************************************* ***** *
consensus_2616#0 AAAAAAAAAAA 1749
consensus_2616#1 -----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||