These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2622#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTCGGATTTTGGGAACCTACTTTTCGTTGAGGAACTCCAAAAAACTGGGTTTTGATTAACCCCTTGCCTTACTTGGGCAAAAACCCCAAAAAAAATCCCCAGCCTTTAACCTTTTTTTTTCTAGGGAAATTTTTTAAATTGGGGGGCCCCCAAAATCCCACTTAACCTTCTTTTAAAAATCCCCCCCAAGGGGTGGGTGGTTTTCTTGGAAAACCTTTTAAATTTTAACCCAAAAACTTTATTAACTTACCTTATTCCCTTTCGGAGGAAAGGAAATCCTTTACAAACTTACCCGGGACATTCCCAATTTGCAACGGGTTTTTGGGGGCGA] [+] EMBL CF320922 [TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTCGGATTTTGGGAACCTACTTTTCGTTGAGGAACTCCAAAAAACTGGGTTTTGATTAACCCCTTGCCTTACTTGGGCAAAAACCCCAAAAAAAATCCCCAGCCTTTAACCTTTTTTTTTCTAGGGAAATTTTTTAAATTGGGGGGCCCCCAAAATCCCACTTAACCTTCTTTTAAAAATCCCCCCCAAGGGGTGGGTGGTTTTCTTGGAAAACCTTTTAAATTTTAACCCAAAAACTTTATTAACTTACCTTATTCCCTTTCGGAGGAAAGGAAATCCTTTACAAACTTACCCGGGACATTCCCAATTTGCAACGGGTTTTTGGGGGCGA] consensusID : consensus_2622#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 289 fasta sequence [TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATCCCGGCACAAAAACTTCTTTAACTTACCTCATTCCCTTTCGGAGGAAAGGAAATCCTTTACAAACTTACCCGGGACATCCACAAAATGCAACGGATTTTTGGGGGCGACCCCTAACCGTTTAGGAAATCATTTTCTAAAGTTTTACCCCCCGAAATGACCCCCCCCCAAATTTTCCAAGGGCTCCCCCAAAATCCGAGTTTTTACCCCTTTCCAAATTTTTTTT] [+] EMBL CF313043 [TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAAAATCCCGGCACAAAAACTTCTTTAACTTACCTCATTCCCTTTCGGAGGAAAGGAAATCCTTTACAAACTTACCCGGGACATCCACAAAATGCAACGGATTTTTGGGGGCGACCCCTAACCGTTTAGGAAATCATTTTCTAAAGTTTTACCCCCCGAAATGACCCCCCCCCAAATTTTCCAAGGGCTCCCCCAAAATCCGAGTTTTTACCCCTTTCCAAATTTTTTTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2622#0 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAAAATTCGGATTTTGGGAACCTACTT 60 consensus_2622#1 TTTTTTTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTTT-----TTTTTTT 55 ********************** ********* ** **** * ** consensus_2622#0 TTCGTTGAGGAACTCCAAAAAACTGGGTTTTGATTAACCCCTTGCCTTACTTGGGCAA-- 118 consensus_2622#1 TTTTTAAAATCCCGGCACAAAAACTTCTTTAACTTACCTCATTCCCTTTCGGAGGAAAGG 115 ** * * * ** **** *** *** * * ** **** * ** ** consensus_2622#0 AAACCCCAAAAAAAATCCCCAGCCTTTAACCTTTTTTTTTCTAGGGAAATTTTTTAAATT 178 consensus_2622#1 AAATCCTTTACAAACTTACCCGGGAC--ATCCACAAAATGCAACGGA---TTTTTGG--- 167 *** ** * *** * ** * * * * * * *** ***** consensus_2622#0 GGGGGGCCCCCAAAATCCCACTTAACCTTCTTTTAAAAATCCCCCCCAAGGGGTGGGTGG 238 consensus_2622#1 GGGCGACCCCTAACCGTTTAGGAAATCATTTTCTAAAGTTTTACCCCCCGAAATGA---- 223 *** * **** ** * ** * * ** **** * **** * ** consensus_2622#0 TTTTCTTGGAAAACCTTTTAAATTTTAACCCAAAAACT---TTATTAAC--TTACCTTAT 293 consensus_2622#1 -CCCCCCCCCAAATTTTCCAAGGGCTCCCCCAAAATCCGAGTTTTTACCCCTTTCCAAAT 282 * *** ** ** * ******* * ** *** * ** ** ** consensus_2622#0 TCCCTTTCGGAGGAAAGGAAATCCTTTACAAACTTACCCGGGACATTCCCAATTTGCAAC 353 consensus_2622#1 TTTTTTT----------------------------------------------------- 289 * *** consensus_2622#0 GGGTTTTTGGGGGCGA 369 consensus_2622#1 ---------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||