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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 962 fasta sequence
[TTTTTCCGCGATCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCGCCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCTCCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGCTCCACCGGCTGCGAGCTCGAGCTGGGAAGGGCGATCCCGAGGATCTGTATGGGCCCTACCCATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATAGAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTCGAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGTTTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACATAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCTCTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTTGTCACGGCAGAGAAGGCAAGCAAAGATGGCCTCCAGGAGAAGTTGACCATGTCTGTTGCAGTGCCATTGTTGTGGGGTGTTCCTCCAGCATCAGAGACCCTCCATGTCGCGGTGCGGAGCGGTGGAGGCATTGTGGAGAAGATCTACTGGCAATGGGACTTATTTTAAAAGTCCCAAGCCGTCCAGTCATTAACAAATGATCCATGCCACGGTGTAAATACTCATTCAGTCTAATTCGCTGCTCGCATTGTGTCAGCAATTGTAAATTGTGCATATATGTAAACAGAAAACTTTGGAATCTCTATACATGTACAGACATGGTCACACCCCTGCATATAAGAAACTGTGAGTTAACAGCTCAAC]
[+] EMBL AK109525 [TTTTTCCGCGATCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCGCCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCTCCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGCTCCACCGGCTGCGAGCTCGAGCTGGGAAGGGCGATCCCGAGGATCTGTATGGGCCCTACCCATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATAGAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTCGAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGTTTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACATAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCTCTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTTGTCACGGCAGAGAAGGCAAGCAAAGATGGCCTCCAGGAGAAGTTGACCATGTCTGTTGCAGTGCCATTGTTGTGGGGTGTTCCTCCAGCATCAGAGACCCTCCATGTCGCGGTGCGGAGCGGTGGAGGCATTGTGGAGAAGATCTACTGGCAATGGGACTTATTTTAAAAGTCCCAAGCCGTCCAGTCATTAACAAATGATCCATGCCACGGTGTAAATACTCATTCAGTCTAATTCGCTGCTCGCATTGTGTCAGCAATTGTAAATTGTGCATATATGTAAACAGAAAACTTTGGAATCTCTATACATGTACAGACATGGTCACACCCCTGCATATAAGAAACTGTGAGTTAACAGCTCAAC]
consensusID : consensus_2624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence
[TCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCGCCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCTCCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGCTCCACCGGCTGCGAGCTCGAGCTGGGAAGGACGATCCCGAGGATCTGTATGGGCCCTACCCATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATAGAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTCGAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGTTTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACATAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCTCTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTATGTGCAACAGTCTTACATGGAAAAAAAAATCTTTTGGTACTTTGCTCCTTACAGTTTTATATCTTCATTCTGACTACCGCATAGACTATCTTTCCATATTTGAAATAAGCCATGTAAAGGGTACCAACAGATTACCTTCTTTCTGAGAAAAAAAAAGATTTAAAAATGGCGCACATG]
[+] EMBL CB677323 [TCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCGCCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCTCCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGCTCCACCGGCTGCGAGCTCGAGCTGGGAAGGACGATCCCGAGGATCTGTATGGGCCCTACCCATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATAGAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTCGAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGTTTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACATAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCTCTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTATGTGCAACAGTCTTACATGGAAAAAAAAATCTTTTGGTACTTTGCTCCTTACAGTTTTATATCTTCATTCTGACTACCGCATAGACTATCTTTCCATATTTGAAATAAGCCATGTAAAGGGTACCAACAGATTACCTTCTTTCTGAGAAAAAAAAAGATTTAAAAATGGCGCACATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2624#0 TTTTTCCGCGATCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCG 60
consensus_2624#1 -----------TCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCG 49
*************************************************
consensus_2624#0 CCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCT 120
consensus_2624#1 CCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCT 109
************************************************************
consensus_2624#0 CCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGC 180
consensus_2624#1 CCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGC 169
************************************************************
consensus_2624#0 TCCACCGGCTGCGAGCTCGAGCTGGGAAGGGCGATCCCGAGGATCTGTATGGGCCCTACC 240
consensus_2624#1 TCCACCGGCTGCGAGCTCGAGCTGGGAAGGACGATCCCGAGGATCTGTATGGGCCCTACC 229
****************************** *****************************
consensus_2624#0 CATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATA 300
consensus_2624#1 CATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATA 289
************************************************************
consensus_2624#0 GAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTC 360
consensus_2624#1 GAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTC 349
************************************************************
consensus_2624#0 GAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGT 420
consensus_2624#1 GAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGT 409
************************************************************
consensus_2624#0 TTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACA 480
consensus_2624#1 TTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACA 469
************************************************************
consensus_2624#0 TAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCT 540
consensus_2624#1 TAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCT 529
************************************************************
consensus_2624#0 CTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTTG 600
consensus_2624#1 CTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTAT 589
**********************************************************
consensus_2624#0 TCACGGCAGAGAAGGCAAGCAAAGATGGCCTCCAGGAGAAGTTGACCATGTCTGTTGCAG 660
consensus_2624#1 GTGCAACAGTCTTACATGGAAAAAAAAATCTTTTGGT-------ACTTTGCTCCTTACAG 642
* *** * *** * ** ** ** ** ** ***
consensus_2624#0 TGCCATTGTTGTGGGGTGTTCCTCCAGCATCAGAGACCCTCCATGTCGCGGTGCGGAGCG 720
consensus_2624#1 TTTTATATCT-----TCATTCTGACTACCGCATAGACTATC--TTTCCATATTTGAAAT- 694
* ** * *** * * ** **** ** * ** * * *
consensus_2624#0 GTGGAGGCATTGTGGAGAAGATCTACTGGCAATGGGACTTATTTTAAAAGTCCCAAGCCG 780
consensus_2624#1 ----AAGCCATGTAAAGGGTACCAACAGATTAC----CTTCTTTCTGAGAAAAAAAAAGA 746
* ** *** ** * * ** * * *** *** * **
consensus_2624#0 TCCAGTCATTA-ACAAATGATCCATGCCACGGTGTAAATACTCATTCAGTCTAATTCGCT 839
consensus_2624#1 TTTAAAAATGGCGCACATG----------------------------------------- 765
* * ** ** ***
consensus_2624#0 GCTCGCATTGTGTCAGCAATTGTAAATTGTGCATATATGTAAACAGAAAACTTTGGAATC 899
consensus_2624#1 ------------------------------------------------------------
consensus_2624#0 TCTATACATGTACAGACATGGTCACACCCCTGCATATAAGAAACTGTGAGTTAACAGCTC 959
consensus_2624#1 ------------------------------------------------------------
consensus_2624#0 AAC 962
consensus_2624#1 ---
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||