These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2624#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 962 fasta sequence [TTTTTCCGCGATCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCGCCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCTCCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGCTCCACCGGCTGCGAGCTCGAGCTGGGAAGGGCGATCCCGAGGATCTGTATGGGCCCTACCCATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATAGAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTCGAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGTTTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACATAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCTCTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTTGTCACGGCAGAGAAGGCAAGCAAAGATGGCCTCCAGGAGAAGTTGACCATGTCTGTTGCAGTGCCATTGTTGTGGGGTGTTCCTCCAGCATCAGAGACCCTCCATGTCGCGGTGCGGAGCGGTGGAGGCATTGTGGAGAAGATCTACTGGCAATGGGACTTATTTTAAAAGTCCCAAGCCGTCCAGTCATTAACAAATGATCCATGCCACGGTGTAAATACTCATTCAGTCTAATTCGCTGCTCGCATTGTGTCAGCAATTGTAAATTGTGCATATATGTAAACAGAAAACTTTGGAATCTCTATACATGTACAGACATGGTCACACCCCTGCATATAAGAAACTGTGAGTTAACAGCTCAAC] [+] EMBL AK109525 [TTTTTCCGCGATCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCGCCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCTCCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGCTCCACCGGCTGCGAGCTCGAGCTGGGAAGGGCGATCCCGAGGATCTGTATGGGCCCTACCCATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATAGAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTCGAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGTTTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACATAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCTCTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTTGTCACGGCAGAGAAGGCAAGCAAAGATGGCCTCCAGGAGAAGTTGACCATGTCTGTTGCAGTGCCATTGTTGTGGGGTGTTCCTCCAGCATCAGAGACCCTCCATGTCGCGGTGCGGAGCGGTGGAGGCATTGTGGAGAAGATCTACTGGCAATGGGACTTATTTTAAAAGTCCCAAGCCGTCCAGTCATTAACAAATGATCCATGCCACGGTGTAAATACTCATTCAGTCTAATTCGCTGCTCGCATTGTGTCAGCAATTGTAAATTGTGCATATATGTAAACAGAAAACTTTGGAATCTCTATACATGTACAGACATGGTCACACCCCTGCATATAAGAAACTGTGAGTTAACAGCTCAAC] consensusID : consensus_2624#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 765 fasta sequence [TCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCGCCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCTCCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGCTCCACCGGCTGCGAGCTCGAGCTGGGAAGGACGATCCCGAGGATCTGTATGGGCCCTACCCATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATAGAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTCGAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGTTTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACATAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCTCTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTATGTGCAACAGTCTTACATGGAAAAAAAAATCTTTTGGTACTTTGCTCCTTACAGTTTTATATCTTCATTCTGACTACCGCATAGACTATCTTTCCATATTTGAAATAAGCCATGTAAAGGGTACCAACAGATTACCTTCTTTCTGAGAAAAAAAAAGATTTAAAAATGGCGCACATG] [+] EMBL CB677323 [TCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCGCCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCTCCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGCTCCACCGGCTGCGAGCTCGAGCTGGGAAGGACGATCCCGAGGATCTGTATGGGCCCTACCCATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATAGAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTCGAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGTTTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACATAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCTCTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTATGTGCAACAGTCTTACATGGAAAAAAAAATCTTTTGGTACTTTGCTCCTTACAGTTTTATATCTTCATTCTGACTACCGCATAGACTATCTTTCCATATTTGAAATAAGCCATGTAAAGGGTACCAACAGATTACCTTCTTTCTGAGAAAAAAAAAGATTTAAAAATGGCGCACATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2624#0 TTTTTCCGCGATCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCG 60 consensus_2624#1 -----------TCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCG 49 ************************************************* consensus_2624#0 CCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCT 120 consensus_2624#1 CCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCT 109 ************************************************************ consensus_2624#0 CCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGC 180 consensus_2624#1 CCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGC 169 ************************************************************ consensus_2624#0 TCCACCGGCTGCGAGCTCGAGCTGGGAAGGGCGATCCCGAGGATCTGTATGGGCCCTACC 240 consensus_2624#1 TCCACCGGCTGCGAGCTCGAGCTGGGAAGGACGATCCCGAGGATCTGTATGGGCCCTACC 229 ****************************** ***************************** consensus_2624#0 CATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATA 300 consensus_2624#1 CATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATA 289 ************************************************************ consensus_2624#0 GAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTC 360 consensus_2624#1 GAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTC 349 ************************************************************ consensus_2624#0 GAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGT 420 consensus_2624#1 GAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGT 409 ************************************************************ consensus_2624#0 TTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACA 480 consensus_2624#1 TTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACA 469 ************************************************************ consensus_2624#0 TAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCT 540 consensus_2624#1 TAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCT 529 ************************************************************ consensus_2624#0 CTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTTG 600 consensus_2624#1 CTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTAT 589 ********************************************************** consensus_2624#0 TCACGGCAGAGAAGGCAAGCAAAGATGGCCTCCAGGAGAAGTTGACCATGTCTGTTGCAG 660 consensus_2624#1 GTGCAACAGTCTTACATGGAAAAAAAAATCTTTTGGT-------ACTTTGCTCCTTACAG 642 * *** * *** * ** ** ** ** ** *** consensus_2624#0 TGCCATTGTTGTGGGGTGTTCCTCCAGCATCAGAGACCCTCCATGTCGCGGTGCGGAGCG 720 consensus_2624#1 TTTTATATCT-----TCATTCTGACTACCGCATAGACTATC--TTTCCATATTTGAAAT- 694 * ** * *** * * ** **** ** * ** * * * consensus_2624#0 GTGGAGGCATTGTGGAGAAGATCTACTGGCAATGGGACTTATTTTAAAAGTCCCAAGCCG 780 consensus_2624#1 ----AAGCCATGTAAAGGGTACCAACAGATTAC----CTTCTTTCTGAGAAAAAAAAAGA 746 * ** *** ** * * ** * * *** *** * ** consensus_2624#0 TCCAGTCATTA-ACAAATGATCCATGCCACGGTGTAAATACTCATTCAGTCTAATTCGCT 839 consensus_2624#1 TTTAAAAATGGCGCACATG----------------------------------------- 765 * * ** ** *** consensus_2624#0 GCTCGCATTGTGTCAGCAATTGTAAATTGTGCATATATGTAAACAGAAAACTTTGGAATC 899 consensus_2624#1 ------------------------------------------------------------ consensus_2624#0 TCTATACATGTACAGACATGGTCACACCCCTGCATATAAGAAACTGTGAGTTAACAGCTC 959 consensus_2624#1 ------------------------------------------------------------ consensus_2624#0 AAC 962 consensus_2624#1 --- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||