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Oryza sativa
cluster # 2624 cluster # 2624       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2624#0 length = 962 sequences # 1  
consensus_2624#1 length = 765 sequences # 1  

consensusID : consensus_2624#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 962
fasta sequence
                              [TTTTTCCGCGATCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCGCCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCTCCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGCTCCACCGGCTGCGAGCTCGAGCTGGGAAGGGCGATCCCGAGGATCTGTATGGGCCCTACCCATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATAGAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTCGAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGTTTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACATAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCTCTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTTGTCACGGCAGAGAAGGCAAGCAAAGATGGCCTCCAGGAGAAGTTGACCATGTCTGTTGCAGTGCCATTGTTGTGGGGTGTTCCTCCAGCATCAGAGACCCTCCATGTCGCGGTGCGGAGCGGTGGAGGCATTGTGGAGAAGATCTACTGGCAATGGGACTTATTTTAAAAGTCCCAAGCCGTCCAGTCATTAACAAATGATCCATGCCACGGTGTAAATACTCATTCAGTCTAATTCGCTGCTCGCATTGTGTCAGCAATTGTAAATTGTGCATATATGTAAACAGAAAACTTTGGAATCTCTATACATGTACAGACATGGTCACACCCCTGCATATAAGAAACTGTGAGTTAACAGCTCAAC]

[+] EMBL AK109525             [TTTTTCCGCGATCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCGCCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCTCCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGCTCCACCGGCTGCGAGCTCGAGCTGGGAAGGGCGATCCCGAGGATCTGTATGGGCCCTACCCATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATAGAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTCGAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGTTTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACATAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCTCTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTTGTCACGGCAGAGAAGGCAAGCAAAGATGGCCTCCAGGAGAAGTTGACCATGTCTGTTGCAGTGCCATTGTTGTGGGGTGTTCCTCCAGCATCAGAGACCCTCCATGTCGCGGTGCGGAGCGGTGGAGGCATTGTGGAGAAGATCTACTGGCAATGGGACTTATTTTAAAAGTCCCAAGCCGTCCAGTCATTAACAAATGATCCATGCCACGGTGTAAATACTCATTCAGTCTAATTCGCTGCTCGCATTGTGTCAGCAATTGTAAATTGTGCATATATGTAAACAGAAAACTTTGGAATCTCTATACATGTACAGACATGGTCACACCCCTGCATATAAGAAACTGTGAGTTAACAGCTCAAC]


>consensus_2624#0 TTTTTCCGCGATCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCG CCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCT CCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGC TCCACCGGCTGCGAGCTCGAGCTGGGAAGGGCGATCCCGAGGATCTGTATGGGCCCTACC CATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATA GAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTC GAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGT TTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACA TAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCT CTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTTG TCACGGCAGAGAAGGCAAGCAAAGATGGCCTCCAGGAGAAGTTGACCATGTCTGTTGCAG TGCCATTGTTGTGGGGTGTTCCTCCAGCATCAGAGACCCTCCATGTCGCGGTGCGGAGCG GTGGAGGCATTGTGGAGAAGATCTACTGGCAATGGGACTTATTTTAAAAGTCCCAAGCCG TCCAGTCATTAACAAATGATCCATGCCACGGTGTAAATACTCATTCAGTCTAATTCGCTG CTCGCATTGTGTCAGCAATTGTAAATTGTGCATATATGTAAACAGAAAACTTTGGAATCT CTATACATGTACAGACATGGTCACACCCCTGCATATAAGAAACTGTGAGTTAACAGCTCA AC



consensusID : consensus_2624#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 765
fasta sequence
                              [TCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCGCCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCTCCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGCTCCACCGGCTGCGAGCTCGAGCTGGGAAGGACGATCCCGAGGATCTGTATGGGCCCTACCCATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATAGAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTCGAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGTTTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACATAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCTCTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTATGTGCAACAGTCTTACATGGAAAAAAAAATCTTTTGGTACTTTGCTCCTTACAGTTTTATATCTTCATTCTGACTACCGCATAGACTATCTTTCCATATTTGAAATAAGCCATGTAAAGGGTACCAACAGATTACCTTCTTTCTGAGAAAAAAAAAGATTTAAAAATGGCGCACATG]

[+] EMBL CB677323             [TCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCGCCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCTCCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGCTCCACCGGCTGCGAGCTCGAGCTGGGAAGGACGATCCCGAGGATCTGTATGGGCCCTACCCATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATAGAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTCGAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGTTTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACATAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCTCTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTATGTGCAACAGTCTTACATGGAAAAAAAAATCTTTTGGTACTTTGCTCCTTACAGTTTTATATCTTCATTCTGACTACCGCATAGACTATCTTTCCATATTTGAAATAAGCCATGTAAAGGGTACCAACAGATTACCTTCTTTCTGAGAAAAAAAAAGATTTAAAAATGGCGCACATG]


>consensus_2624#1 TCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCGCCGCAGCCGCA TCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCTCCCCTCTCCGC GGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGCTCCACCGGCTG CGAGCTCGAGCTGGGAAGGACGATCCCGAGGATCTGTATGGGCCCTACCCATGGGATCAG TCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATAGAGTCACACTG TTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTCGAATTACTCCA TCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGTTTCAGGAGAGC TCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACATAGCAGCAACA AATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCTCTATTGAAATG CTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTATGTGCAACAGTC TTACATGGAAAAAAAAATCTTTTGGTACTTTGCTCCTTACAGTTTTATATCTTCATTCTG ACTACCGCATAGACTATCTTTCCATATTTGAAATAAGCCATGTAAAGGGTACCAACAGAT TACCTTCTTTCTGAGAAAAAAAAAGATTTAAAAATGGCGCACATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2624#0      TTTTTCCGCGATCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCG 60
consensus_2624#1      -----------TCCCGTGCGCATCTCATCGCCCCCACCTCGTCCGCCATGGCCGATTCCG 49
                                 *************************************************

consensus_2624#0      CCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCT 120
consensus_2624#1      CCGCAGCCGCATCCTCCTCCCTCCCCCGCTCGCTGGCGTCCAGGAGGCCGCTGCCCTCCT 109
                      ************************************************************

consensus_2624#0      CCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGC 180
consensus_2624#1      CCCCTCTCCGCGGCGGGAGGCCCCGGTCTCCCCGCCGCTGCCGCTTCGGGTCCCGCTCGC 169
                      ************************************************************

consensus_2624#0      TCCACCGGCTGCGAGCTCGAGCTGGGAAGGGCGATCCCGAGGATCTGTATGGGCCCTACC 240
consensus_2624#1      TCCACCGGCTGCGAGCTCGAGCTGGGAAGGACGATCCCGAGGATCTGTATGGGCCCTACC 229
                      ****************************** *****************************

consensus_2624#0      CATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATA 300
consensus_2624#1      CATGGGATCAGTCCTTGGATCTCACCACTGGCCTCGATATTCAGTGGGTGCCAGAAGATA 289
                      ************************************************************

consensus_2624#0      GAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTC 360
consensus_2624#1      GAGTCACACTGTTCACTTCTGATGGGCTTGTTCAAATAGGGGGTTCCCTGGTTCCTCGTC 349
                      ************************************************************

consensus_2624#0      GAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGT 420
consensus_2624#1      GAATTACTCCATCAGAGAAGAGGCAACGAAAAGTAAAAGGTATACAAAATATCCAACGGT 409
                      ************************************************************

consensus_2624#0      TTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACA 480
consensus_2624#1      TTCAGGAGAGCTCGTACATGGACCCAAATCAAAGTCTTTGCCTTGGAGCACTATTTAACA 469
                      ************************************************************

consensus_2624#0      TAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCT 540
consensus_2624#1      TAGCAGCAACAAATGGTCTAGATATGGGAAGAAGACTATGCATCTTTGGCTTTTGTCGCT 529
                      ************************************************************

consensus_2624#0      CTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTTG 600
consensus_2624#1      CTATTGAAATGCTAAGTGATGTAGTGGAAGATACAGTATTGGAGCATGGTGGTGAGGTAT 589
                      **********************************************************  

consensus_2624#0      TCACGGCAGAGAAGGCAAGCAAAGATGGCCTCCAGGAGAAGTTGACCATGTCTGTTGCAG 660
consensus_2624#1      GTGCAACAGTCTTACATGGAAAAAAAAATCTTTTGGT-------ACTTTGCTCCTTACAG 642
                         *  ***         * *** *    **   **        **  **    ** ***

consensus_2624#0      TGCCATTGTTGTGGGGTGTTCCTCCAGCATCAGAGACCCTCCATGTCGCGGTGCGGAGCG 720
consensus_2624#1      TTTTATATCT-----TCATTCTGACTACCGCATAGACTATC--TTTCCATATTTGAAAT- 694
                      *   **   *        ***   *  *  ** ****  **  * **    *  * *   

consensus_2624#0      GTGGAGGCATTGTGGAGAAGATCTACTGGCAATGGGACTTATTTTAAAAGTCCCAAGCCG 780
consensus_2624#1      ----AAGCCATGTAAAGGGTACCAACAGATTAC----CTTCTTTCTGAGAAAAAAAAAGA 746
                          * **  ***  **   * * ** *   *     *** ***   *      **    

consensus_2624#0      TCCAGTCATTA-ACAAATGATCCATGCCACGGTGTAAATACTCATTCAGTCTAATTCGCT 839
consensus_2624#1      TTTAAAAATGGCGCACATG----------------------------------------- 765
                      *  *   **    ** ***                                         

consensus_2624#0      GCTCGCATTGTGTCAGCAATTGTAAATTGTGCATATATGTAAACAGAAAACTTTGGAATC 899
consensus_2624#1      ------------------------------------------------------------
                                                                                  

consensus_2624#0      TCTATACATGTACAGACATGGTCACACCCCTGCATATAAGAAACTGTGAGTTAACAGCTC 959
consensus_2624#1      ------------------------------------------------------------
                                                                                  

consensus_2624#0      AAC 962
consensus_2624#1      ---
                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)