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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2890 fasta sequence
[CACAGGTCGGGTTCAGAGTGGCAATCAGTAGGTCGTCCCAGGGCCAGCGCCGATCCCCATCCGTCCCGCGAGCAAGCAGAGGCGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCTCCGCCACCGCCGCCTGCGCCGATCCCCCAACCGTCCCGCGAGCGAGCGAGCGAGCGAGCAGGGGCGCCGTCGTTCGTCCTGCTTCTTCCGCCGCTTCCTGGTACTTTACCCCAGAATAGCAGTGATGTGTCAAAATCTATAGTTGGTCAGGTGCAAGCAGAAGAGCAGGAAGGAAATAGCCAGGCAAACCAACAAGCAGTGCAGCAACATATGATTTTAGCAGGCCAGTTGTCTCAGCCAAAATCGTTAACTGAAGGTTTGGAAAATAATGTCTACCCAATTAACGGAACACGATCACCAGCCAGAACAAGAACCACCACATTCTGAAAACCATCTGAAACAGGCAGAGCCAAACAGCTTCCAGTTCGCTGAAAAGGAAACAGGCTATGCTGGTCTACAGAATTTCACAGGCCCCAAGGTGGATGTGGGTCAGACTTCAGGAGAGCAGCAGCATGTAAAACAGATGGTCGGTCAGCAAGCACCACCTGGTGCACAGGACGCAAGGAAGCGGGGATACCAACCGTCTATACCATTTAATATGTTGATTCCAATCCTACAGGCTCATCTTGACAGAGACAAGGATATGCAGCTTCAAACTGTGTGGGCAAAACTTAGGCGTAATGAAGTTCATAAAGATGATTTCTTGAGAGTTATCAGGAACATCGTTGGAGATCAAATGCTAAAGCAAGCAGCCCATAAAGTTTTTGCACAGATGCAAGCCCAGGCACAGAGAAGTGGCCAGGCAAATGCAAATCAGCAGGCTAATGCAAATCAGTATTCTTTACAATCCCAAGTATCTTCCAGCGGTTCAGCTCAATTACATGATCAGCAAGTTCACGTGTCCACCACACCTAATCAGGGCCAAAAAAACCAAGCATTGTCTTCATCCCAAACCTTTGTGCAATCTGGCACTCAGGTGCAGAGCAGTATGACTGCTCATGATAATTCCATCCAACGGCCAGATGCAAAGGGAATGCATGTTACGCCGAACCGACCTCCTGTTATGAACTCAGCAATTTCTGCACAAACAATGAACAAACAGCAGCAACCCACACAAGTCCAGCAAGCCTCACAGCAAATATATGGAACAACTAATCGCCCTGACCAGCCATACACTAGGCCAATCGGTGGTTCAACACCTCTTAGCTCACTGAGTTCAGAATCAGAAATAAGGCCTTCCTCTCATCCTGCAAAAATGGAGATTCTTCCTTCTCATCCAATGACACAACAAAATGCAGCTGCGCAGCAAATGCAACAGAACAAGGATGTGAAGACTAATGCTTCTAATCCAAGGAGTAATGCAAAGCAAGATTCGGGGACAGGTAAGGGTCGTGCAGTTGGCACTGGAGGTTCTTCAACGAAATCGCAAGGGAAGCAGGGCCCCCCTAACTTTTCCACACCTCCCGCTGCAAAGAGTAACAAGAAAACTGCTGGGCAGAAGAAGTCATTGGAAACATCAGGCTCTACACCACCCCCTCCTAGCAAAAAGCAGAAGACTTCTGGAACCTTCCAAGAACAAAGCTTCGATCAACTAAATGATGTCACGGCTGTTAGTGGTGTTAATCTTAGGGAAGAAGAAGAACAGCTACTCTCTGCCCCAAAGGAAGAGAGCTGGGCCTCAGAAGAAGCAAGGAAAATTGCACAGGAAGAAGATGGCAAGCTTTTTCTGCAGAAAGGCCCACTTCTGAAGAAACTAGCAGCAATCGTTCCTAAATGCAATTTGAAGAGCATTGGTGGTGATGTTGAGCATTGTTTATCAATGTGCGTGGAGGAGCGATTGCGAAGATTTATCAGTACTCTCATAAGAGTTTCAAAGCAGAGAATTGACACAGAAAAGTCTGGCCATCAACTAGTTATAACATCAGATGTTGGCCGGCAAATTTTGCGGATGAACCAGAAAGCTAAGGAAGAATGGGATAAAAAACAAGCAGAGGAAACAGACAAGAACAAGAAACAAAATGAGGTTGACGGCGGTGGCACTGTGGAATTAGACAAGGAAAAGGAGGAAACTCGTTCAAAGAATGCAAAGCCCAACAAAGAAGAAGATGACAAGATGAGAACAACAGCTGCAAATGTTGCCGCCCGACAGGCTGTTGGAGGAAGTGATATGCTGTCCAAATGGCAACTGATGGCTGAACAAGCTAGACAGAAACGCGAAGGCCTTGATCTGGCTGCTTCTTCACAGCGCGGGACAGCTTCCAGGTCGCATATGGCTGGGAAAGGTCCCACAGATCACCACGAAGCTTCGAAGAGGACCCATTCTGCAGCGTTTGGAACTGGAGGCATGAACAGGCAAGGCAGGGGTCCATTTGCAGCGTCTCATCCAAAAGGACCACAAAGAACTATTTCTATGAAGGATGTAATATGTGTCCTCGAGAGGGAACCTCAGATGACAAAATCGCGGCTGATATATCGGCTCTATGAGCGGTTGCCTGGAGATTCCACCAGAGATTAGGCTTGAATCGTCATTTATTTGGTGTATGTATGCACATTTGTGTAACAATATCGAGCTATAACTTATTGCTCTACTCCTTCCATTTTCTCTGGTTTGGAGTTGCGAGGTGTGGGTGGGTGTGTTGGGGGAGGGGGGGGGGGGACAAAACTAGTGTAACAAGTTAGCTGACATGGTACTCTTAGAATATGAACACATAAGATGTACTTCCAAACAAAATGGTCATGTAAAGATTATCACAGTGTAACAGATGGCAAGATTGCCCATTGCTGCCTGCTGGTGCATGCGCTTGCTCATTGTACTGTTATAATTCAGTGA]
[+] EMBL AK069133 [CACAGGTCGGGTTCAGAGTGGCAATCAGTAGGTCGTCCCAGGGCCAGCGCCGATCCCCATCCGTCCCGCGAGCAAGCAGAGGCGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCTCCGCCACCGCCGCCTGCGCCGATCCCCCAACCGTCCCGCGAGCGAGCGAGCGAGCGAGCAGGGGCGCCGTCGTTCGTCCTGCTTCTTCCGCCGCTTCCTGGTACTTTACCCCAGAATAGCAGTGATGTGTCAAAATCTATAGTTGGTCAGGTGCAAGCAGAAGAGCAGGAAGGAAATAGCCAGGCAAACCAACAAGCAGTGCAGCAACATATGATTTTAGCAGGCCAGTTGTCTCAGCCAAAATCGTTAACTGAAGGTTTGGAAAATAATGTCTACCCAATTAACGGAACACGATCACCAGCCAGAACAAGAACCACCACATTCTGAAAACCATCTGAAACAGGCAGAGCCAAACAGCTTCCAGTTCGCTGAAAAGGAAACAGGCTATGCTGGTCTACAGAATTTCACAGGCCCCAAGGTGGATGTGGGTCAGACTTCAGGAGAGCAGCAGCATGTAAAACAGATGGTCGGTCAGCAAGCACCACCTGGTGCACAGGACGCAAGGAAGCGGGGATACCAACCGTCTATACCATTTAATATGTTGATTCCAATCCTACAGGCTCATCTTGACAGAGACAAGGATATGCAGCTTCAAACTGTGTGGGCAAAACTTAGGCGTAATGAAGTTCATAAAGATGATTTCTTGAGAGTTATCAGGAACATCGTTGGAGATCAAATGCTAAAGCAAGCAGCCCATAAAGTTTTTGCACAGATGCAAGCCCAGGCACAGAGAAGTGGCCAGGCAAATGCAAATCAGCAGGCTAATGCAAATCAGTATTCTTTACAATCCCAAGTATCTTCCAGCGGTTCAGCTCAATTACATGATCAGCAAGTTCACGTGTCCACCACACCTAATCAGGGCCAAAAAAACCAAGCATTGTCTTCATCCCAAACCTTTGTGCAATCTGGCACTCAGGTGCAGAGCAGTATGACTGCTCATGATAATTCCATCCAACGGCCAGATGCAAAGGGAATGCATGTTACGCCGAACCGACCTCCTGTTATGAACTCAGCAATTTCTGCACAAACAATGAACAAACAGCAGCAACCCACACAAGTCCAGCAAGCCTCACAGCAAATATATGGAACAACTAATCGCCCTGACCAGCCATACACTAGGCCAATCGGTGGTTCAACACCTCTTAGCTCACTGAGTTCAGAATCAGAAATAAGGCCTTCCTCTCATCCTGCAAAAATGGAGATTCTTCCTTCTCATCCAATGACACAACAAAATGCAGCTGCGCAGCAAATGCAACAGAACAAGGATGTGAAGACTAATGCTTCTAATCCAAGGAGTAATGCAAAGCAAGATTCGGGGACAGGTAAGGGTCGTGCAGTTGGCACTGGAGGTTCTTCAACGAAATCGCAAGGGAAGCAGGGCCCCCCTAACTTTTCCACACCTCCCGCTGCAAAGAGTAACAAGAAAACTGCTGGGCAGAAGAAGTCATTGGAAACATCAGGCTCTACACCACCCCCTCCTAGCAAAAAGCAGAAGACTTCTGGAACCTTCCAAGAACAAAGCTTCGATCAACTAAATGATGTCACGGCTGTTAGTGGTGTTAATCTTAGGGAAGAAGAAGAACAGCTACTCTCTGCCCCAAAGGAAGAGAGCTGGGCCTCAGAAGAAGCAAGGAAAATTGCACAGGAAGAAGATGGCAAGCTTTTTCTGCAGAAAGGCCCACTTCTGAAGAAACTAGCAGCAATCGTTCCTAAATGCAATTTGAAGAGCATTGGTGGTGATGTTGAGCATTGTTTATCAATGTGCGTGGAGGAGCGATTGCGAAGATTTATCAGTACTCTCATAAGAGTTTCAAAGCAGAGAATTGACACAGAAAAGTCTGGCCATCAACTAGTTATAACATCAGATGTTGGCCGGCAAATTTTGCGGATGAACCAGAAAGCTAAGGAAGAATGGGATAAAAAACAAGCAGAGGAAACAGACAAGAACAAGAAACAAAATGAGGTTGACGGCGGTGGCACTGTGGAATTAGACAAGGAAAAGGAGGAAACTCGTTCAAAGAATGCAAAGCCCAACAAAGAAGAAGATGACAAGATGAGAACAACAGCTGCAAATGTTGCCGCCCGACAGGCTGTTGGAGGAAGTGATATGCTGTCCAAATGGCAACTGATGGCTGAACAAGCTAGACAGAAACGCGAAGGCCTTGATCTGGCTGCTTCTTCACAGCGCGGGACAGCTTCCAGGTCGCATATGGCTGGGAAAGGTCCCACAGATCACCACGAAGCTTCGAAGAGGACCCATTCTGCAGCGTTTGGAACTGGAGGCATGAACAGGCAAGGCAGGGGTCCATTTGCAGCGTCTCATCCAAAAGGACCACAAAGAACTATTTCTATGAAGGATGTAATATGTGTCCTCGAGAGGGAACCTCAGATGACAAAATCGCGGCTGATATATCGGCTCTATGAGCGGTTGCCTGGAGATTCCACCAGAGATTAGGCTTGAATCGTCATTTATTTGGTGTATGTATGCACATTTGTGTAACAATATCGAGCTATAACTTATTGCTCTACTCCTTCCATTTTCTCTGGTTTGGAGTTGCGAGGTGTGGGTGGGTGTGTTGGGGGAGGGGGGGGGGGGACAAAACTAGTGTAACAAGTTAGCTGACATGGTACTCTTAGAATATGAACACATAAGATGTACTTCCAAACAAAATGGTCATGTAAAGATTATCACAGTGTAACAGATGGCAAGATTGCCCATTGCTGCCTGCTGGTGCATGCGCTTGCTCATTGTACTGTTATAATTCAGTGA]
consensusID : consensus_2636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence
[AGATGTACTTCCAAACAAAATGGTCATGTAAAGATTATCACAGTGTAACAGATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGGCTTGCCC]
[+] EMBL CF313132 [AGATGTACTTCCAAACAAAATGGTCATGTAAAGATTATCACAGTGTAACAGATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGGCTTGCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2636#0 CACAGGTCGGGTTCAGAGTGGCAATCAGTAGGTCGTCCCAGGGCCAGCGCCGATCCCCAT 60
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 CCGTCCCGCGAGCAAGCAGAGGCGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCT 120
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 CCGCCACCGCCGCCTGCGCCGATCCCCCAACCGTCCCGCGAGCGAGCGAGCGAGCGAGCA 180
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 GGGGCGCCGTCGTTCGTCCTGCTTCTTCCGCCGCTTCCTGGTACTTTACCCCAGAATAGC 240
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 AGTGATGTGTCAAAATCTATAGTTGGTCAGGTGCAAGCAGAAGAGCAGGAAGGAAATAGC 300
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 CAGGCAAACCAACAAGCAGTGCAGCAACATATGATTTTAGCAGGCCAGTTGTCTCAGCCA 360
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 AAATCGTTAACTGAAGGTTTGGAAAATAATGTCTACCCAATTAACGGAACACGATCACCA 420
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 GCCAGAACAAGAACCACCACATTCTGAAAACCATCTGAAACAGGCAGAGCCAAACAGCTT 480
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 CCAGTTCGCTGAAAAGGAAACAGGCTATGCTGGTCTACAGAATTTCACAGGCCCCAAGGT 540
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 GGATGTGGGTCAGACTTCAGGAGAGCAGCAGCATGTAAAACAGATGGTCGGTCAGCAAGC 600
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 ACCACCTGGTGCACAGGACGCAAGGAAGCGGGGATACCAACCGTCTATACCATTTAATAT 660
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 GTTGATTCCAATCCTACAGGCTCATCTTGACAGAGACAAGGATATGCAGCTTCAAACTGT 720
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 GTGGGCAAAACTTAGGCGTAATGAAGTTCATAAAGATGATTTCTTGAGAGTTATCAGGAA 780
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 CATCGTTGGAGATCAAATGCTAAAGCAAGCAGCCCATAAAGTTTTTGCACAGATGCAAGC 840
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 CCAGGCACAGAGAAGTGGCCAGGCAAATGCAAATCAGCAGGCTAATGCAAATCAGTATTC 900
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 TTTACAATCCCAAGTATCTTCCAGCGGTTCAGCTCAATTACATGATCAGCAAGTTCACGT 960
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 GTCCACCACACCTAATCAGGGCCAAAAAAACCAAGCATTGTCTTCATCCCAAACCTTTGT 1020
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 GCAATCTGGCACTCAGGTGCAGAGCAGTATGACTGCTCATGATAATTCCATCCAACGGCC 1080
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 AGATGCAAAGGGAATGCATGTTACGCCGAACCGACCTCCTGTTATGAACTCAGCAATTTC 1140
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 TGCACAAACAATGAACAAACAGCAGCAACCCACACAAGTCCAGCAAGCCTCACAGCAAAT 1200
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 ATATGGAACAACTAATCGCCCTGACCAGCCATACACTAGGCCAATCGGTGGTTCAACACC 1260
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 TCTTAGCTCACTGAGTTCAGAATCAGAAATAAGGCCTTCCTCTCATCCTGCAAAAATGGA 1320
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 GATTCTTCCTTCTCATCCAATGACACAACAAAATGCAGCTGCGCAGCAAATGCAACAGAA 1380
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 CAAGGATGTGAAGACTAATGCTTCTAATCCAAGGAGTAATGCAAAGCAAGATTCGGGGAC 1440
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 AGGTAAGGGTCGTGCAGTTGGCACTGGAGGTTCTTCAACGAAATCGCAAGGGAAGCAGGG 1500
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 CCCCCCTAACTTTTCCACACCTCCCGCTGCAAAGAGTAACAAGAAAACTGCTGGGCAGAA 1560
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 GAAGTCATTGGAAACATCAGGCTCTACACCACCCCCTCCTAGCAAAAAGCAGAAGACTTC 1620
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 TGGAACCTTCCAAGAACAAAGCTTCGATCAACTAAATGATGTCACGGCTGTTAGTGGTGT 1680
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 TAATCTTAGGGAAGAAGAAGAACAGCTACTCTCTGCCCCAAAGGAAGAGAGCTGGGCCTC 1740
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 AGAAGAAGCAAGGAAAATTGCACAGGAAGAAGATGGCAAGCTTTTTCTGCAGAAAGGCCC 1800
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 ACTTCTGAAGAAACTAGCAGCAATCGTTCCTAAATGCAATTTGAAGAGCATTGGTGGTGA 1860
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 TGTTGAGCATTGTTTATCAATGTGCGTGGAGGAGCGATTGCGAAGATTTATCAGTACTCT 1920
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 CATAAGAGTTTCAAAGCAGAGAATTGACACAGAAAAGTCTGGCCATCAACTAGTTATAAC 1980
consensus_2636#1 -------------------AGATGTACTTCCAAACAAAATGGTCATGTAAAGATTATCAC 41
*** * * ** * *** *** * **** **
consensus_2636#0 ATCAGATGTTGGCCGGCAAATTTTGCGGATGAACCAGAAAGCTAAGGAAGAATGGGATAA 2040
consensus_2636#1 A----GTGT-----AACAGATGT--CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 90
* *** ** ** * * * ** * *** ** ** ** * **
consensus_2636#0 AAAACAAGCAGAGGAAACAGACAAGAACAAGAAACAAAATGAGGTTGACGGCGGTGGCAC 2100
consensus_2636#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGGC--TTGCCC 148
**** ** * * *** * * ** ** ** *** **** * *** * ** *
consensus_2636#0 TGTGGAATTAGACAAGGAAAAGGAGGAAACTCGTTCAAAGAATGCAAAGCCCAACAAAGA 2160
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 AGAAGATGACAAGATGAGAACAACAGCTGCAAATGTTGCCGCCCGACAGGCTGTTGGAGG 2220
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 AAGTGATATGCTGTCCAAATGGCAACTGATGGCTGAACAAGCTAGACAGAAACGCGAAGG 2280
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 CCTTGATCTGGCTGCTTCTTCACAGCGCGGGACAGCTTCCAGGTCGCATATGGCTGGGAA 2340
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 AGGTCCCACAGATCACCACGAAGCTTCGAAGAGGACCCATTCTGCAGCGTTTGGAACTGG 2400
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 AGGCATGAACAGGCAAGGCAGGGGTCCATTTGCAGCGTCTCATCCAAAAGGACCACAAAG 2460
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 AACTATTTCTATGAAGGATGTAATATGTGTCCTCGAGAGGGAACCTCAGATGACAAAATC 2520
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 GCGGCTGATATATCGGCTCTATGAGCGGTTGCCTGGAGATTCCACCAGAGATTAGGCTTG 2580
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 AATCGTCATTTATTTGGTGTATGTATGCACATTTGTGTAACAATATCGAGCTATAACTTA 2640
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 TTGCTCTACTCCTTCCATTTTCTCTGGTTTGGAGTTGCGAGGTGTGGGTGGGTGTGTTGG 2700
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 GGGAGGGGGGGGGGGGACAAAACTAGTGTAACAAGTTAGCTGACATGGTACTCTTAGAAT 2760
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 ATGAACACATAAGATGTACTTCCAAACAAAATGGTCATGTAAAGATTATCACAGTGTAAC 2820
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 AGATGGCAAGATTGCCCATTGCTGCCTGCTGGTGCATGCGCTTGCTCATTGTACTGTTAT 2880
consensus_2636#1 ------------------------------------------------------------
consensus_2636#0 AATTCAGTGA 2890
consensus_2636#1 ----------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||