These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2636#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2890 fasta sequence [CACAGGTCGGGTTCAGAGTGGCAATCAGTAGGTCGTCCCAGGGCCAGCGCCGATCCCCATCCGTCCCGCGAGCAAGCAGAGGCGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCTCCGCCACCGCCGCCTGCGCCGATCCCCCAACCGTCCCGCGAGCGAGCGAGCGAGCGAGCAGGGGCGCCGTCGTTCGTCCTGCTTCTTCCGCCGCTTCCTGGTACTTTACCCCAGAATAGCAGTGATGTGTCAAAATCTATAGTTGGTCAGGTGCAAGCAGAAGAGCAGGAAGGAAATAGCCAGGCAAACCAACAAGCAGTGCAGCAACATATGATTTTAGCAGGCCAGTTGTCTCAGCCAAAATCGTTAACTGAAGGTTTGGAAAATAATGTCTACCCAATTAACGGAACACGATCACCAGCCAGAACAAGAACCACCACATTCTGAAAACCATCTGAAACAGGCAGAGCCAAACAGCTTCCAGTTCGCTGAAAAGGAAACAGGCTATGCTGGTCTACAGAATTTCACAGGCCCCAAGGTGGATGTGGGTCAGACTTCAGGAGAGCAGCAGCATGTAAAACAGATGGTCGGTCAGCAAGCACCACCTGGTGCACAGGACGCAAGGAAGCGGGGATACCAACCGTCTATACCATTTAATATGTTGATTCCAATCCTACAGGCTCATCTTGACAGAGACAAGGATATGCAGCTTCAAACTGTGTGGGCAAAACTTAGGCGTAATGAAGTTCATAAAGATGATTTCTTGAGAGTTATCAGGAACATCGTTGGAGATCAAATGCTAAAGCAAGCAGCCCATAAAGTTTTTGCACAGATGCAAGCCCAGGCACAGAGAAGTGGCCAGGCAAATGCAAATCAGCAGGCTAATGCAAATCAGTATTCTTTACAATCCCAAGTATCTTCCAGCGGTTCAGCTCAATTACATGATCAGCAAGTTCACGTGTCCACCACACCTAATCAGGGCCAAAAAAACCAAGCATTGTCTTCATCCCAAACCTTTGTGCAATCTGGCACTCAGGTGCAGAGCAGTATGACTGCTCATGATAATTCCATCCAACGGCCAGATGCAAAGGGAATGCATGTTACGCCGAACCGACCTCCTGTTATGAACTCAGCAATTTCTGCACAAACAATGAACAAACAGCAGCAACCCACACAAGTCCAGCAAGCCTCACAGCAAATATATGGAACAACTAATCGCCCTGACCAGCCATACACTAGGCCAATCGGTGGTTCAACACCTCTTAGCTCACTGAGTTCAGAATCAGAAATAAGGCCTTCCTCTCATCCTGCAAAAATGGAGATTCTTCCTTCTCATCCAATGACACAACAAAATGCAGCTGCGCAGCAAATGCAACAGAACAAGGATGTGAAGACTAATGCTTCTAATCCAAGGAGTAATGCAAAGCAAGATTCGGGGACAGGTAAGGGTCGTGCAGTTGGCACTGGAGGTTCTTCAACGAAATCGCAAGGGAAGCAGGGCCCCCCTAACTTTTCCACACCTCCCGCTGCAAAGAGTAACAAGAAAACTGCTGGGCAGAAGAAGTCATTGGAAACATCAGGCTCTACACCACCCCCTCCTAGCAAAAAGCAGAAGACTTCTGGAACCTTCCAAGAACAAAGCTTCGATCAACTAAATGATGTCACGGCTGTTAGTGGTGTTAATCTTAGGGAAGAAGAAGAACAGCTACTCTCTGCCCCAAAGGAAGAGAGCTGGGCCTCAGAAGAAGCAAGGAAAATTGCACAGGAAGAAGATGGCAAGCTTTTTCTGCAGAAAGGCCCACTTCTGAAGAAACTAGCAGCAATCGTTCCTAAATGCAATTTGAAGAGCATTGGTGGTGATGTTGAGCATTGTTTATCAATGTGCGTGGAGGAGCGATTGCGAAGATTTATCAGTACTCTCATAAGAGTTTCAAAGCAGAGAATTGACACAGAAAAGTCTGGCCATCAACTAGTTATAACATCAGATGTTGGCCGGCAAATTTTGCGGATGAACCAGAAAGCTAAGGAAGAATGGGATAAAAAACAAGCAGAGGAAACAGACAAGAACAAGAAACAAAATGAGGTTGACGGCGGTGGCACTGTGGAATTAGACAAGGAAAAGGAGGAAACTCGTTCAAAGAATGCAAAGCCCAACAAAGAAGAAGATGACAAGATGAGAACAACAGCTGCAAATGTTGCCGCCCGACAGGCTGTTGGAGGAAGTGATATGCTGTCCAAATGGCAACTGATGGCTGAACAAGCTAGACAGAAACGCGAAGGCCTTGATCTGGCTGCTTCTTCACAGCGCGGGACAGCTTCCAGGTCGCATATGGCTGGGAAAGGTCCCACAGATCACCACGAAGCTTCGAAGAGGACCCATTCTGCAGCGTTTGGAACTGGAGGCATGAACAGGCAAGGCAGGGGTCCATTTGCAGCGTCTCATCCAAAAGGACCACAAAGAACTATTTCTATGAAGGATGTAATATGTGTCCTCGAGAGGGAACCTCAGATGACAAAATCGCGGCTGATATATCGGCTCTATGAGCGGTTGCCTGGAGATTCCACCAGAGATTAGGCTTGAATCGTCATTTATTTGGTGTATGTATGCACATTTGTGTAACAATATCGAGCTATAACTTATTGCTCTACTCCTTCCATTTTCTCTGGTTTGGAGTTGCGAGGTGTGGGTGGGTGTGTTGGGGGAGGGGGGGGGGGGACAAAACTAGTGTAACAAGTTAGCTGACATGGTACTCTTAGAATATGAACACATAAGATGTACTTCCAAACAAAATGGTCATGTAAAGATTATCACAGTGTAACAGATGGCAAGATTGCCCATTGCTGCCTGCTGGTGCATGCGCTTGCTCATTGTACTGTTATAATTCAGTGA] [+] EMBL AK069133 [CACAGGTCGGGTTCAGAGTGGCAATCAGTAGGTCGTCCCAGGGCCAGCGCCGATCCCCATCCGTCCCGCGAGCAAGCAGAGGCGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCTCCGCCACCGCCGCCTGCGCCGATCCCCCAACCGTCCCGCGAGCGAGCGAGCGAGCGAGCAGGGGCGCCGTCGTTCGTCCTGCTTCTTCCGCCGCTTCCTGGTACTTTACCCCAGAATAGCAGTGATGTGTCAAAATCTATAGTTGGTCAGGTGCAAGCAGAAGAGCAGGAAGGAAATAGCCAGGCAAACCAACAAGCAGTGCAGCAACATATGATTTTAGCAGGCCAGTTGTCTCAGCCAAAATCGTTAACTGAAGGTTTGGAAAATAATGTCTACCCAATTAACGGAACACGATCACCAGCCAGAACAAGAACCACCACATTCTGAAAACCATCTGAAACAGGCAGAGCCAAACAGCTTCCAGTTCGCTGAAAAGGAAACAGGCTATGCTGGTCTACAGAATTTCACAGGCCCCAAGGTGGATGTGGGTCAGACTTCAGGAGAGCAGCAGCATGTAAAACAGATGGTCGGTCAGCAAGCACCACCTGGTGCACAGGACGCAAGGAAGCGGGGATACCAACCGTCTATACCATTTAATATGTTGATTCCAATCCTACAGGCTCATCTTGACAGAGACAAGGATATGCAGCTTCAAACTGTGTGGGCAAAACTTAGGCGTAATGAAGTTCATAAAGATGATTTCTTGAGAGTTATCAGGAACATCGTTGGAGATCAAATGCTAAAGCAAGCAGCCCATAAAGTTTTTGCACAGATGCAAGCCCAGGCACAGAGAAGTGGCCAGGCAAATGCAAATCAGCAGGCTAATGCAAATCAGTATTCTTTACAATCCCAAGTATCTTCCAGCGGTTCAGCTCAATTACATGATCAGCAAGTTCACGTGTCCACCACACCTAATCAGGGCCAAAAAAACCAAGCATTGTCTTCATCCCAAACCTTTGTGCAATCTGGCACTCAGGTGCAGAGCAGTATGACTGCTCATGATAATTCCATCCAACGGCCAGATGCAAAGGGAATGCATGTTACGCCGAACCGACCTCCTGTTATGAACTCAGCAATTTCTGCACAAACAATGAACAAACAGCAGCAACCCACACAAGTCCAGCAAGCCTCACAGCAAATATATGGAACAACTAATCGCCCTGACCAGCCATACACTAGGCCAATCGGTGGTTCAACACCTCTTAGCTCACTGAGTTCAGAATCAGAAATAAGGCCTTCCTCTCATCCTGCAAAAATGGAGATTCTTCCTTCTCATCCAATGACACAACAAAATGCAGCTGCGCAGCAAATGCAACAGAACAAGGATGTGAAGACTAATGCTTCTAATCCAAGGAGTAATGCAAAGCAAGATTCGGGGACAGGTAAGGGTCGTGCAGTTGGCACTGGAGGTTCTTCAACGAAATCGCAAGGGAAGCAGGGCCCCCCTAACTTTTCCACACCTCCCGCTGCAAAGAGTAACAAGAAAACTGCTGGGCAGAAGAAGTCATTGGAAACATCAGGCTCTACACCACCCCCTCCTAGCAAAAAGCAGAAGACTTCTGGAACCTTCCAAGAACAAAGCTTCGATCAACTAAATGATGTCACGGCTGTTAGTGGTGTTAATCTTAGGGAAGAAGAAGAACAGCTACTCTCTGCCCCAAAGGAAGAGAGCTGGGCCTCAGAAGAAGCAAGGAAAATTGCACAGGAAGAAGATGGCAAGCTTTTTCTGCAGAAAGGCCCACTTCTGAAGAAACTAGCAGCAATCGTTCCTAAATGCAATTTGAAGAGCATTGGTGGTGATGTTGAGCATTGTTTATCAATGTGCGTGGAGGAGCGATTGCGAAGATTTATCAGTACTCTCATAAGAGTTTCAAAGCAGAGAATTGACACAGAAAAGTCTGGCCATCAACTAGTTATAACATCAGATGTTGGCCGGCAAATTTTGCGGATGAACCAGAAAGCTAAGGAAGAATGGGATAAAAAACAAGCAGAGGAAACAGACAAGAACAAGAAACAAAATGAGGTTGACGGCGGTGGCACTGTGGAATTAGACAAGGAAAAGGAGGAAACTCGTTCAAAGAATGCAAAGCCCAACAAAGAAGAAGATGACAAGATGAGAACAACAGCTGCAAATGTTGCCGCCCGACAGGCTGTTGGAGGAAGTGATATGCTGTCCAAATGGCAACTGATGGCTGAACAAGCTAGACAGAAACGCGAAGGCCTTGATCTGGCTGCTTCTTCACAGCGCGGGACAGCTTCCAGGTCGCATATGGCTGGGAAAGGTCCCACAGATCACCACGAAGCTTCGAAGAGGACCCATTCTGCAGCGTTTGGAACTGGAGGCATGAACAGGCAAGGCAGGGGTCCATTTGCAGCGTCTCATCCAAAAGGACCACAAAGAACTATTTCTATGAAGGATGTAATATGTGTCCTCGAGAGGGAACCTCAGATGACAAAATCGCGGCTGATATATCGGCTCTATGAGCGGTTGCCTGGAGATTCCACCAGAGATTAGGCTTGAATCGTCATTTATTTGGTGTATGTATGCACATTTGTGTAACAATATCGAGCTATAACTTATTGCTCTACTCCTTCCATTTTCTCTGGTTTGGAGTTGCGAGGTGTGGGTGGGTGTGTTGGGGGAGGGGGGGGGGGGACAAAACTAGTGTAACAAGTTAGCTGACATGGTACTCTTAGAATATGAACACATAAGATGTACTTCCAAACAAAATGGTCATGTAAAGATTATCACAGTGTAACAGATGGCAAGATTGCCCATTGCTGCCTGCTGGTGCATGCGCTTGCTCATTGTACTGTTATAATTCAGTGA] consensusID : consensus_2636#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 148 fasta sequence [AGATGTACTTCCAAACAAAATGGTCATGTAAAGATTATCACAGTGTAACAGATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGGCTTGCCC] [+] EMBL CF313132 [AGATGTACTTCCAAACAAAATGGTCATGTAAAGATTATCACAGTGTAACAGATGTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGGCTTGCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2636#0 CACAGGTCGGGTTCAGAGTGGCAATCAGTAGGTCGTCCCAGGGCCAGCGCCGATCCCCAT 60 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 CCGTCCCGCGAGCAAGCAGAGGCGGCGCCGTCGCTCGTCCTGCTGCTTCCGCCGCATCCT 120 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 CCGCCACCGCCGCCTGCGCCGATCCCCCAACCGTCCCGCGAGCGAGCGAGCGAGCGAGCA 180 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 GGGGCGCCGTCGTTCGTCCTGCTTCTTCCGCCGCTTCCTGGTACTTTACCCCAGAATAGC 240 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 AGTGATGTGTCAAAATCTATAGTTGGTCAGGTGCAAGCAGAAGAGCAGGAAGGAAATAGC 300 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 CAGGCAAACCAACAAGCAGTGCAGCAACATATGATTTTAGCAGGCCAGTTGTCTCAGCCA 360 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 AAATCGTTAACTGAAGGTTTGGAAAATAATGTCTACCCAATTAACGGAACACGATCACCA 420 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 GCCAGAACAAGAACCACCACATTCTGAAAACCATCTGAAACAGGCAGAGCCAAACAGCTT 480 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 CCAGTTCGCTGAAAAGGAAACAGGCTATGCTGGTCTACAGAATTTCACAGGCCCCAAGGT 540 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 GGATGTGGGTCAGACTTCAGGAGAGCAGCAGCATGTAAAACAGATGGTCGGTCAGCAAGC 600 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 ACCACCTGGTGCACAGGACGCAAGGAAGCGGGGATACCAACCGTCTATACCATTTAATAT 660 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 GTTGATTCCAATCCTACAGGCTCATCTTGACAGAGACAAGGATATGCAGCTTCAAACTGT 720 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 GTGGGCAAAACTTAGGCGTAATGAAGTTCATAAAGATGATTTCTTGAGAGTTATCAGGAA 780 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 CATCGTTGGAGATCAAATGCTAAAGCAAGCAGCCCATAAAGTTTTTGCACAGATGCAAGC 840 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 CCAGGCACAGAGAAGTGGCCAGGCAAATGCAAATCAGCAGGCTAATGCAAATCAGTATTC 900 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 TTTACAATCCCAAGTATCTTCCAGCGGTTCAGCTCAATTACATGATCAGCAAGTTCACGT 960 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 GTCCACCACACCTAATCAGGGCCAAAAAAACCAAGCATTGTCTTCATCCCAAACCTTTGT 1020 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 GCAATCTGGCACTCAGGTGCAGAGCAGTATGACTGCTCATGATAATTCCATCCAACGGCC 1080 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 AGATGCAAAGGGAATGCATGTTACGCCGAACCGACCTCCTGTTATGAACTCAGCAATTTC 1140 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 TGCACAAACAATGAACAAACAGCAGCAACCCACACAAGTCCAGCAAGCCTCACAGCAAAT 1200 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 ATATGGAACAACTAATCGCCCTGACCAGCCATACACTAGGCCAATCGGTGGTTCAACACC 1260 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 TCTTAGCTCACTGAGTTCAGAATCAGAAATAAGGCCTTCCTCTCATCCTGCAAAAATGGA 1320 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 GATTCTTCCTTCTCATCCAATGACACAACAAAATGCAGCTGCGCAGCAAATGCAACAGAA 1380 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 CAAGGATGTGAAGACTAATGCTTCTAATCCAAGGAGTAATGCAAAGCAAGATTCGGGGAC 1440 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 AGGTAAGGGTCGTGCAGTTGGCACTGGAGGTTCTTCAACGAAATCGCAAGGGAAGCAGGG 1500 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 CCCCCCTAACTTTTCCACACCTCCCGCTGCAAAGAGTAACAAGAAAACTGCTGGGCAGAA 1560 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 GAAGTCATTGGAAACATCAGGCTCTACACCACCCCCTCCTAGCAAAAAGCAGAAGACTTC 1620 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 TGGAACCTTCCAAGAACAAAGCTTCGATCAACTAAATGATGTCACGGCTGTTAGTGGTGT 1680 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 TAATCTTAGGGAAGAAGAAGAACAGCTACTCTCTGCCCCAAAGGAAGAGAGCTGGGCCTC 1740 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 AGAAGAAGCAAGGAAAATTGCACAGGAAGAAGATGGCAAGCTTTTTCTGCAGAAAGGCCC 1800 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 ACTTCTGAAGAAACTAGCAGCAATCGTTCCTAAATGCAATTTGAAGAGCATTGGTGGTGA 1860 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 TGTTGAGCATTGTTTATCAATGTGCGTGGAGGAGCGATTGCGAAGATTTATCAGTACTCT 1920 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 CATAAGAGTTTCAAAGCAGAGAATTGACACAGAAAAGTCTGGCCATCAACTAGTTATAAC 1980 consensus_2636#1 -------------------AGATGTACTTCCAAACAAAATGGTCATGTAAAGATTATCAC 41 *** * * ** * *** *** * **** ** consensus_2636#0 ATCAGATGTTGGCCGGCAAATTTTGCGGATGAACCAGAAAGCTAAGGAAGAATGGGATAA 2040 consensus_2636#1 A----GTGT-----AACAGATGT--CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 90 * *** ** ** * * * ** * *** ** ** ** * ** consensus_2636#0 AAAACAAGCAGAGGAAACAGACAAGAACAAGAAACAAAATGAGGTTGACGGCGGTGGCAC 2100 consensus_2636#1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACCCTGGC--TTGCCC 148 **** ** * * *** * * ** ** ** *** **** * *** * ** * consensus_2636#0 TGTGGAATTAGACAAGGAAAAGGAGGAAACTCGTTCAAAGAATGCAAAGCCCAACAAAGA 2160 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 AGAAGATGACAAGATGAGAACAACAGCTGCAAATGTTGCCGCCCGACAGGCTGTTGGAGG 2220 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 AAGTGATATGCTGTCCAAATGGCAACTGATGGCTGAACAAGCTAGACAGAAACGCGAAGG 2280 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 CCTTGATCTGGCTGCTTCTTCACAGCGCGGGACAGCTTCCAGGTCGCATATGGCTGGGAA 2340 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 AGGTCCCACAGATCACCACGAAGCTTCGAAGAGGACCCATTCTGCAGCGTTTGGAACTGG 2400 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 AGGCATGAACAGGCAAGGCAGGGGTCCATTTGCAGCGTCTCATCCAAAAGGACCACAAAG 2460 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 AACTATTTCTATGAAGGATGTAATATGTGTCCTCGAGAGGGAACCTCAGATGACAAAATC 2520 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 GCGGCTGATATATCGGCTCTATGAGCGGTTGCCTGGAGATTCCACCAGAGATTAGGCTTG 2580 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 AATCGTCATTTATTTGGTGTATGTATGCACATTTGTGTAACAATATCGAGCTATAACTTA 2640 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 TTGCTCTACTCCTTCCATTTTCTCTGGTTTGGAGTTGCGAGGTGTGGGTGGGTGTGTTGG 2700 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 GGGAGGGGGGGGGGGGACAAAACTAGTGTAACAAGTTAGCTGACATGGTACTCTTAGAAT 2760 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 ATGAACACATAAGATGTACTTCCAAACAAAATGGTCATGTAAAGATTATCACAGTGTAAC 2820 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 AGATGGCAAGATTGCCCATTGCTGCCTGCTGGTGCATGCGCTTGCTCATTGTACTGTTAT 2880 consensus_2636#1 ------------------------------------------------------------ consensus_2636#0 AATTCAGTGA 2890 consensus_2636#1 ---------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||