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Oryza sativa
cluster # 2643 cluster # 2643       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2643#0 length = 1474 sequences # 2  

consensusID : consensus_2643#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1474
fasta sequence
                              [AACGAAGATGGCACTTGATCCGATGGCTGCAAGATGTTGATGACGTGGCTTCACGTGGAGGCTGCTTTAGAGAAGTTAATGCTTGTAGTGGATTACAACTATATAGTAAGAAGGGATTCGGAGACATGGAACACCGGGTTCCCAGTGAGGCAGAGCACCGTCAACCATAGAGCGGGATGAGAGGAGGGGAAGGCGGGGAGCAACGCCCCACCAGGCTACCGGGGAGCACCAGCGGCGCTGTGGCGATGGTGGTGGGGACCTCCTCCTTGGTGAAGCGGAAAAGGCGGAGCCCAGCAGAGGAGCGGTAGTTCGGGAACCCATCCAGATGGCATGTCGATCGTGAAGAGGTCACGGAGGTCAGGAGGAAGCTAGAGGCCACGCGGAAGAGCTCGGGGTCAGAGAGGCCTGGGAGGACAGAGACCCTAGCGGTGGCGAGGTGAGCGAGGACAGTGGACGGTAAGGGAGCGACTGTGGGGTAGGAGGAGGGAGACGCTGTGGCGGGTGACACGCGCAGGGTGGTGATAGCAGAGCCATGGGTGGTGAGGCGATGGAGGCCGGTGGCATGGGAGGGTGAGTGCAGGAGGCCATGCGGCACTGGCAGGCGGTGGTCGACGTCGACCATATGGAAGGGAGAGGGGAAGAGAGAGGAGAGGAGGAAGAGAAGTGTTATTCACTAACATGTGGGTCCCACTCTGCCACGTTAGCTAAAAGCGGATCAATCAGGATCCTAGGCAGTATTATGTTCAGTTTTAGCACTGAAAGTTTACGATTTTAGGTTTATAGCACCGAAAGTTACCTCAGTTACATTTTTTAGCACTTCGTCACAGTCACCCTCTCCATTTGTTTCTTCCTCCTCCGAACTCCTTGCTATTCTTCAGTTCAATATGCACACTGTACAGAAGGATGATTCTCTGTTTCTCACTCTTCCAAGTTCCAAGGTATGTGGAAAATCTAATTGTTGTATTATGTTGTTTTCTAATCTATTACATCGCCTCTCTCATAAGGTATATATAGGAGTACATAGGAGTTAGAAACTTGGAGTACAGTACAAGTAAGAGCAGATTTATCTCTAGATTATCTCTAGGATTCTATCTCTAGGACTCTATTGTATCTCTAAGATTCTATCTCTAGAATTGTATCATATCCCTATATTTGTATTTGACTCTTATCTTTAACTAACATATCTGTGTTTCTAACAATGTAGGCGTCCGCCCACGCTGAAATCGGCCAGGCCGATGCTGTTCAGTGCTCACTAGTAGAGGCAAGCGGCTGACCACGAACGCCAGGGACGATGCGAATGCAACCTGCATCGTCTCAACTGCTCACCAGGAACAAGAACTTAATTACCGGTGGCCATGGTGACGTGTTATCATGAGCATGGCGAGCCCAGACACGAGCATCGCCATGGCAGCCTATGGCGATCGAGCTCCGCTGCTCGAAAGCGCCGGCCTGGGCATTCTCGAGGGCGGCGGCA]

[+] EMBL AK106881             [AACGAAGATGGCACTTGATCCGATGGCTGCAAGATGTTGATGACGTGGCTTCACGTGGAGGCTGCTTTAGAGAAGTTAATGCTTGTAGTGGATTACAACTATATAGTAAGAAGGGATTCGGAGACATGGAACACCGGGTTCCCAGTGAGGCAGAGCACCGTCAACCATAGAGCGGGATGAGAGGAGGGGAAGGCGGGGAGCAACGCCCCACCAGGCTACCGGGGAGCACCAGCGGCGCTGTGGCGATGGTGGTGGGGACCTCCTCCTTGGTGAAGCGGAAAAGGCGGAGCCCAGCAGAGGAGCGGTAGTTCGGGAACCCATCCAGATGGCATGTCGATCGTGAAGAGGTCACGGAGGTCAGGAGGAAGCTAGAGGCCACGCGGAAGAGCTCGGGGTCAGAGAGGCCTGGGAGGACAGAGACCCTAGCGGTGGCGAGGTGAGCGAGGACAGTGGACGGTAAGGGAGCGACTGTGGGGTAGGAGGAGGGAGACGCTGTGGCGGGTGACACGCGCAGGGTGGTGATAGCAGAGCCATGGGTGGTGAGGCGATGGAGGCCGGTGGCATGGGAGGGTGAGTGCAGGAGGCCATGCGGCACTGGCAGGCGGTGGTCGACGTCGACCATATGGAAGGGAGAGGGGAAGAGAGAGGAGAGGAGGAAGAGAAGTGTTATTCACTAACATGTGGGTCCCACTCTGCCACGTTAGCTAAAAGCGGATCAATCAGGATCCTAGGCAGTATTATGTTCAGTTTTAGCACTGAAAGTTTACGATTTTAGGTTTATAGCACCGAAAGTTACCTCAGTTACATTTTTTAGCACTTCGTCACAGTCACCCTCTCCATTTGTTTCTTCCTCCTCCGAACTCCTTGCTATTCTTCAGTTCAATATGCACACTGTACAGAAGGATGATTCTCTGTTTCTCACTCTTCCAAGTTCCAAGGTATGTGGAAAATCTAATTGTTGTATTATGTTGTTTTCTAATCTATTACATCGCCTCTCTCATAAGGTATATATAGGAGTACATAGGAGTTAGAAACTTGGAGTACAGTACAAGTAAGAGCAGATTTATCTCTAGATTATCTCTAGGATTCTATCTCTAGGACTCTATTGTATCTCTAAGATTCTATCTCTAGAATTGTATCATATCCCTATATTTGTATTTGACTCTTATCTTTAACTAACATATCTGTGTTTCTAACAATGTAGGCGTCCGCCCACGCTGAAATCGGCCAGGCCGATGCTGTTCAGTGCTCACTAGTAGAGGCAAGCGGCTGACCACGAACGCCAGGGACGATGCGAATGCAACCTGCATCGTCTCAACTGCTCACCAGGAACAAGAACTTAATTACCGGTGGCCATGGTGACGTGTTATCATGAGCATGGCGAGCCCAGACACGAGCATCGCCATGGCAGCCTATGGCGATCGAGCTCCGCTGCTCGAAAGCGCCGGC                         ]
[-] EMBL CB678514             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   nAAGCGGATCAATCAGGATCCTAGGCAGTATTATGTTCAGTTTTAGCACTGAAAGTTTACGATTTTAGGTTTATAGCACCGAAAGTTACCTCAGTTACATTTTTTAGCACTTCGTCACAGTCACCCTCTCCATTTGTTTATTCCTCCTCCGAACTCCTTGCTATTCTTCAGTTCAATATGCACACTGTACAGAAGGATGATTCTCTGTTTCTCACTCTTCCAAGTTCCAAGGTATGTGGAAAATCTAATTGTTGTATTATGTTGTTTTCTAATCTATTACATCGCCTCTCTCATAAGGTATATATAGGAGTACATAGGAGTTAGAAACTTGGAGTACAGTACAAGTAAGAGCAGATTTATCTCTAGATTATCTCTAGGATTCTATCTCTAGGACTCTATTGTATCTCTAAGATTCTATCTCTAGAATTGTATCATATCCCTATATTTGTATTTGACTCTTATCTTTAACTAACATATCTGTGTTTCTAACAATGTAGGCGTCCGCCCACGCTGAAATCGGCCAGGCCGATGCTGTTCAGTGCTCACTAGTAGAGGCAAGCGGCTGACCACGAACGCCAGGGACGATGCGAATGCAACCTGCATCGTCTCAACTGCTCACCAGGAACAAGAACTTAATTACCGGTGGCCATGGTGACGTGTTATCATGAGCATGGCGAGCCCAGACACGAGCATCGCCATGGCAGCCTATGGCGATCGAGCTCCGCTGCTAGAAAGCGCCGGCCTGGGCATTCTCGAGGGCGGCGGCA]


>consensus_2643#0 AACGAAGATGGCACTTGATCCGATGGCTGCAAGATGTTGATGACGTGGCTTCACGTGGAG GCTGCTTTAGAGAAGTTAATGCTTGTAGTGGATTACAACTATATAGTAAGAAGGGATTCG GAGACATGGAACACCGGGTTCCCAGTGAGGCAGAGCACCGTCAACCATAGAGCGGGATGA GAGGAGGGGAAGGCGGGGAGCAACGCCCCACCAGGCTACCGGGGAGCACCAGCGGCGCTG TGGCGATGGTGGTGGGGACCTCCTCCTTGGTGAAGCGGAAAAGGCGGAGCCCAGCAGAGG AGCGGTAGTTCGGGAACCCATCCAGATGGCATGTCGATCGTGAAGAGGTCACGGAGGTCA GGAGGAAGCTAGAGGCCACGCGGAAGAGCTCGGGGTCAGAGAGGCCTGGGAGGACAGAGA CCCTAGCGGTGGCGAGGTGAGCGAGGACAGTGGACGGTAAGGGAGCGACTGTGGGGTAGG AGGAGGGAGACGCTGTGGCGGGTGACACGCGCAGGGTGGTGATAGCAGAGCCATGGGTGG TGAGGCGATGGAGGCCGGTGGCATGGGAGGGTGAGTGCAGGAGGCCATGCGGCACTGGCA GGCGGTGGTCGACGTCGACCATATGGAAGGGAGAGGGGAAGAGAGAGGAGAGGAGGAAGA GAAGTGTTATTCACTAACATGTGGGTCCCACTCTGCCACGTTAGCTAAAAGCGGATCAAT CAGGATCCTAGGCAGTATTATGTTCAGTTTTAGCACTGAAAGTTTACGATTTTAGGTTTA TAGCACCGAAAGTTACCTCAGTTACATTTTTTAGCACTTCGTCACAGTCACCCTCTCCAT TTGTTTCTTCCTCCTCCGAACTCCTTGCTATTCTTCAGTTCAATATGCACACTGTACAGA AGGATGATTCTCTGTTTCTCACTCTTCCAAGTTCCAAGGTATGTGGAAAATCTAATTGTT GTATTATGTTGTTTTCTAATCTATTACATCGCCTCTCTCATAAGGTATATATAGGAGTAC ATAGGAGTTAGAAACTTGGAGTACAGTACAAGTAAGAGCAGATTTATCTCTAGATTATCT CTAGGATTCTATCTCTAGGACTCTATTGTATCTCTAAGATTCTATCTCTAGAATTGTATC ATATCCCTATATTTGTATTTGACTCTTATCTTTAACTAACATATCTGTGTTTCTAACAAT GTAGGCGTCCGCCCACGCTGAAATCGGCCAGGCCGATGCTGTTCAGTGCTCACTAGTAGA GGCAAGCGGCTGACCACGAACGCCAGGGACGATGCGAATGCAACCTGCATCGTCTCAACT GCTCACCAGGAACAAGAACTTAATTACCGGTGGCCATGGTGACGTGTTATCATGAGCATG GCGAGCCCAGACACGAGCATCGCCATGGCAGCCTATGGCGATCGAGCTCCGCTGCTCGAA AGCGCCGGCCTGGGCATTCTCGAGGGCGGCGGCA



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)