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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2651#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 676 fasta sequence
[TTTTTTTTGTGTGTTATTTGCTTGAGGGTAACATGATGGAATTAATGATCATTTTGCTGCTGGTGTAATTGGCGACCTGAACCACCTGATATCGGCCACAATCAGCGTTGTTACGCGCTGCCAGCGAGTTCCGGTTCAAATGAACTCTGGACCTGTAGAAGCTGACGGTGAACCTGATCCCGTTACCGCGGTTGCACTTCTTCATGGTGCTTTTCGTGCCACTTACATCGGGCGACCTACAGGCTAACAGGTCGGTGAGGGCACCGGAGCTGGAACCTGGAAAGCTGGATACCAAGAACATGATGAGCGCCGCCGTTCTTTGTTCTTTTAGATACCTCTGGGTGACCGCCAAGGTCCTGCTGCAGATGAGCCCCATGGAGGTGGCCCAGCTGCTTAACCTTGAGAGCATCTCAAAGCCCTCCTTGTCATCCTAGGGGATGGGCCTGCTCTTTCATTTTATTGCACCAGATAAAATTTGACACCTCCTTCGCTAGTCCTCCAATGCTGGTTGGGTTACGGCACCTGACCTTACACAGGCTGGCTAACATGCTAATACTTAACACGGATGTTTTCGCCCTCGGACCTAGGCCATCTGGTACCACAACCACGGACTGTCGAGGCCTTTCTCTGCGAAGATTTCTTCTTCAACAGCAACCTCGAATCCTTACATTGCATT]
[+] EMBL CA763272 [TTTTTTTTGTGTGTTATTTGCTTGAGGGTAACATGATGGAATTAATGATCATTTTGCTGCTGGTGTAATTGGCGACCTGAACCACCTGATATCGGCCACAATCAGCGTTGTTACGCGCTGCCAGCGAGTTCCGGTTCAAATGAACTCTGGACCTGTAGAAGCTGACGGTGAACCTGATCCCGTTACCGCGGTTGCACTTCTTCATGGTGCTTTTCGTGCCACTTACATCGGGCGACCTACAGGCTAACAGGTCGGTGAGGGCACCGGAGCTGGAACCTGGAAAGCTGGATACCAAGAACATGATGAGCGCCGCCGTTCTTTGTTCTTTTAGATACCTCTGGGTGACCGCCAAGGTCCTGCTGCAGATGAGCCCCATGGAGGTGGCCCAGCTGCTTAACCTTGAGAGCATCTCAAAGCCCTCCTTGTCATCCTAGGGGATGGGCCTGCTCTTTCATTTTATTGCACCAGATAAAATTTGACACCTCCTTCGCTAGTCCTCCAATGCTGGTTGGGTTACGGCACCTGACCTTACACAGGCTGGCTAACATGCTAATACTTAACACGGATGTTTTCGCCCTCGGACCTAGGCCATCTGGTACCACAACCACGGACTGTCGAGGCCTTTCTCTGCGAAGATTTCTTCTTCAACAGCAACCTCGAATCCTTACATTGCATT]
consensusID : consensus_2651#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence
[TTTTTTTTGTGTGTAATTTGCTTGAAATTAACATGATGGAATTAATGATCAATTTGCTGTTGTTGTAGTTGGCGACCTGAACCACCTGATATCGGCAACGATCAGCGGGGTGACGCGCTGCCTGCAGTTCCCGGTGCAACTGAACTCGGACCTGAAGAATCTGGAGGTGAACCTGATCCCGTTACCGCGGCTGCACTTCTTCATGGTGCTGTTCGCGCCGCTTACGTCGGGCGGATTACTGGAGCACATGCCTTGTGACGGCGCCGGAGCTCACGCCCTGGAAGTGGGACGCCGAGAACAAGATGAGCGCCCCCGTTCCGGGCCTCTTGCGATACCTCGCGGAGACCGCCATGGTCCTGTTTAAGATGAGCACCAGGGAGGTGGACCATCCGCTGACCGTTGAGAGCAACTTTAAGTCGTCCTAGTTCTCCTCAGGGGATCCACCTCCTCGTTAATTCTTCTTCCGCGAGATAATTCACTACCTTCTCGACAAGTCCTTCAATGTTGGTAGGGCTCCGCAACCATACTTTTTCAGAGCTTCTTGCAACCAAGTACTTGAACGCGTTGTTCTGACGCTCGGACTACGTCACTGGTGCTCCAACCACGGAGTGTTCGAGATGCACTCTGCGAAGTCCATTGTTCATGAACGACCTCGACTC]
[+] EMBL CA763271 [TTTTTTTTGTGTGTAATTTGCTTGAAATTAACATGATGGAATTAATGATCAATTTGCTGTTGTTGTAGTTGGCGACCTGAACCACCTGATATCGGCAACGATCAGCGGGGTGACGCGCTGCCTGCAGTTCCCGGTGCAACTGAACTCGGACCTGAAGAATCTGGAGGTGAACCTGATCCCGTTACCGCGGCTGCACTTCTTCATGGTGCTGTTCGCGCCGCTTACGTCGGGCGGATTACTGGAGCACATGCCTTGTGACGGCGCCGGAGCTCACGCCCTGGAAGTGGGACGCCGAGAACAAGATGAGCGCCCCCGTTCCGGGCCTCTTGCGATACCTCGCGGAGACCGCCATGGTCCTGTTTAAGATGAGCACCAGGGAGGTGGACCATCCGCTGACCGTTGAGAGCAACTTTAAGTCGTCCTAGTTCTCCTCAGGGGATCCACCTCCTCGTTAATTCTTCTTCCGCGAGATAATTCACTACCTTCTCGACAAGTCCTTCAATGTTGGTAGGGCTCCGCAACCATACTTTTTCAGAGCTTCTTGCAACCAAGTACTTGAACGCGTTGTTCTGACGCTCGGACTACGTCACTGGTGCTCCAACCACGGAGTGTTCGAGATGCACTCTGCGAAGTCCATTGTTCATGAACGACCTCGACTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2651#0 TTTTTTTTGTGTGTTATTTGCTTGAGGGTAACATGATGGAATTAATGATCATTTTGCTGC 60
consensus_2651#1 TTTTTTTTGTGTGTAATTTGCTTGAAATTAACATGATGGAATTAATGATCAATTTGCTGT 60
************** ********** *********************** *******
consensus_2651#0 TGGTGTAATTGGCGACCTGAACCACCTGATATCGGCCACAATCAGCGTTGTTACGCGCTG 120
consensus_2651#1 TGTTGTAGTTGGCGACCTGAACCACCTGATATCGGCAACGATCAGCGGGGTGACGCGCTG 120
** **** **************************** ** ******* ** ********
consensus_2651#0 CCAGCGAGTTCCGGTTCAAATGAACTCTGGACCTGTAGAAGCTGACGGTGAACCTGATCC 180
consensus_2651#1 CCTGCAGTTCCCGGTGCAACTGAACTC-GGACCTGAAGAATCTGGAGGTGAACCTGATCC 179
** ** * ***** *** ******* ******* **** *** **************
consensus_2651#0 CGTTACCGCGGTTGCACTTCTTCATGGTGCTTTTCGTGCCACTTACATCGGGCGACCTAC 240
consensus_2651#1 CGTTACCGCGGCTGCACTTCTTCATGGTGCTGTTCGCGCCGCTTACGTCGGGCGGATTAC 239
*********** ******************* **** *** ***** ******* ***
consensus_2651#0 AGGCTAACAGGTCG-GTGAGGGCACCGGAGCTGGAACCTGGAAAGCTGGATACCAAGAAC 299
consensus_2651#1 TGGAGCACATGCCTTGTGACGGCGCCGGAGCTCACGCCCTGGAAGTGGGACGCCGAGAAC 299
** *** * * **** *** ******** ** * *** *** ** *****
consensus_2651#0 ATGATGAGCGCCGCCGTTCTTTGTTCTTTTAGATACCTCTGGGTGACCGCCAAGGTCCTG 359
consensus_2651#1 AAGATGAGCGCCCCCGTTCCGGGCCTCTTGCGATACCTCGCGGAGACCGCCATGGTCCTG 359
* ********** ****** * ** ******** ** ******** *******
consensus_2651#0 CTGCAGATGAGCCCCATGGAGGTGGCCCAGCTGCTTAACCTTGAGAGCATCTCAAAGCCC 419
consensus_2651#1 TTTAAGATGAGCACCAGGGAGGTGGACCATCCGCTGACCGTTGAGAGCAACTTTAAGTCG 419
* ******** *** ******** *** * *** * * ********* ** *** *
consensus_2651#0 TCCTTGTCATCCT-AGGGGATGGGCCTGCTCTTTCATT-TTATTGCACCAGATAAAATTT 477
consensus_2651#1 TCCTAGTTCTCCTCAGGGGATCCACCTCCTCGTTAATTCTTCTTCCGCGAGATAA--TTC 477
**** ** **** ******* *** *** ** *** ** ** * * ****** **
consensus_2651#0 GACACCTCCTTCGCTAGTCCTCCAATGCTGGTTGGGTTACGGCACCTGACCTTACACAGG 537
consensus_2651#1 ACTACCTTCTCGACAAGTCCTTCAATGTTGGTAGGGCTCCGCAACCATACTTT-TTCAGA 536
**** ** * ****** ***** **** *** * ** *** ** ** ***
consensus_2651#0 CTGGCTAACATGCTAATACTTAACACGGATGTTTTCGCCCTCGGACCTAGGCCATCTGGT 597
consensus_2651#1 GCTTCTTGCAACCAAGTACTTGAACGCGTTGTTCTGACGCTCGGAC-TACGTCA-CTGGT 594
** ** * * ***** * * **** * * ******* ** * ** *****
consensus_2651#0 ACCACAACCACGGACTGTCGAGGCCTTTCTCTGCGAAGATTTCTTCTTCAACAGCAACCT 657
consensus_2651#1 GCTCCAACCACGGAGTGTTCGAGATGCACTCTGCGAAG-TCCATTGTTCATGAACGACCT 653
* ********** *** * ********** * ** **** * * ****
consensus_2651#0 CGAATCCTTACATTGCATT 676
consensus_2651#1 CGACTC------------- 659
*** **
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||