These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2662#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1613 fasta sequence [CCGCACCGCACGCCGACATCGCCGGAGAGGGCGCCGCTCGCCGGCATCGTCGTCGCCGGAGACTCGTCCGTCCATCCGCAAGGGAGTCCAGCAATACTCCATCATGCAAAGCCCCAGCAAGGTTTCTGAAGCCTCTGGCTCAGCACCCCCTGCCACGTCTGTGATCGAAGGTTGGGCAGAACTCCCAGAGGGCCTGCTTCACTCCATTGTTGCTCTATTGGGCTCTTTCCTTGACCTCCTTGCCTTCACTGGCACCTGCCATTCTTGGCGTGCTGCCTTCTCATCCTACCCATCAAAATCTAACTTTCGCACCATACTCCCACCCCTCCTCGTCCGACCCAATGTCCGCGTCAAAGCCCCTTATAGCAGCAATGGTCATCGCAAGCTACGCTCGTGTGAGGTCATTGATCTAGCCAACCGAAACACCCCACTCCGCTGCCAGATTCCTCAAGAAACTCTGCAGAGGATGCATTTTGCAGGTTCTTCCCATGGTCAGCTCATCTGCTGCCGCCGTGGTTATTGTCTTGTTGTTGATGTGTTCACCGGTGCTGAGGTTTCACCTCCACGCCTTCCATTCAGTGAGAACTGTGATGAGTTCTACTACTGTGGCATTCTGACGGCTCCTATCACGTCACCTAACTCACATCTCATTATCAGCACTCAGTCCTCCCTGTTTGATTGGCCAGTTGGAAGTGACTCTTGGTCTGAGCTCAAGCTGCCCGTTAATCGGGTCGATCAGATTGTGGAATTCAATGGTCAGCTCATCGCTGTGATTGAATACAGTCTGTACACTTTGCAGTTGGCCCCCATTCTTCGCTTGGAAAAGATAAAAACTCTCTGGTGGGATAACATGAATGAATGTCCGTATATGAGACCATGGTTTGTGGTTTGTGGTGACATGCTTCTCATTGTTGACCACTACATAAGTTTTTCATTTGGAGCACCGGTCCTCTACAGGCCATACCGTCTGGACATGTCGACCAAGCCTGCAAAATGGGTGGAGGTAAAGAAGCTGGAGAACTGGGCACTCTTCATTGGGGGTGATGCAAGGAGCCCTCCATTTTCTTTCAAGAACCCGGAGCGCTGGGGAGGGAGGAGCAACTGCTTGTACTATGCTCACTACTCTCAGCCATTGAGCCTGCATGGGTTAGGTGATGATGCAGATGCTGTGTGGGATCCTAACACTGATGACAACCTCGTGTTCAAAAGAAACTGGTACCGCCAGCTGCAGGCCTTGTGGGTGTACCCAAGCATGTTCTATTCAGCGGGAGACGGCCAGTGATTGCTGCACAAGAGCTCTGCTCTTATCATCTGATTCTGAGACTCTCTTCTGAATTCTGATGTAGGGCAGAGCATCTTAATGCTTAGCTTAATAATACTTGCAGTCGTTTTGTAGCTCAGTTGTTAGCTGCATTCTCTAGTCTAATATTTTCGAGGTGCACTGGATGCTTTTGTACCTAAACTATTAGTAGCTGTTGCTTTTATGCTGGAAGTCTGGATTCTGGAACTCGCTACCGTTGAGGATTTCCACTGGTGATGGAGATAATGTTTCGTTTTACGAGTGTTTGAGCTTAGCTGCTATATTTTGGAACATTAATATATATTCTTGTGTG] [+] EMBL AK072974 [CCGCACCGCACGCCGACATCGCCGGAGAGGGCGCCGCTCGCCGGCATCGTCGTCGCCGGAGACTCGTCCGTCCATCCGCAAGGGAGTCCAGCAATACTCCATCATGCAAAGCCCCAGCAAGGTTTCTGAAGCCTCTGGCTCAGCACCCCCTGCCACGTCTGTGATCGAAGGTTGGGCAGAACTCCCAGAGGGCCTGCTTCACTCCATTGTTGCTCTATTGGGCTCTTTCCTTGACCTCCTTGCCTTCACTGGCACCTGCCATTCTTGGCGTGCTGCCTTCTCATCCTACCCATCAAAATCTAACTTTCGCACCATACTCCCACCCCTCCTCGTCCGACCCAATGTCCGCGTCAAAGCCCCTTATAGCAGCAATGGTCATCGCAAGCTACGCTCGTGTGAGGTCATTGATCTAGCCAACCGAAACACCCCACTCCGCTGCCAGATTCCTCAAGAAACTCTGCAGAGGATGCATTTTGCAGGTTCTTCCCATGGTCAGCTCATCTGCTGCCGCCGTGGTTATTGTCTTGTTGTTGATGTGTTCACCGGTGCTGAGGTTTCACCTCCACGCCTTCCATTCAGTGAGAACTGTGATGAGTTCTACTACTGTGGCATTCTGACGGCTCCTATCACGTCACCTAACTCACATCTCATTATCAGCACTCAGTCCTCCCTGTTTGATTGGCCAGTTGGAAGTGACTCTTGGTCTGAGCTCAAGCTGCCCGTTAATCGGGTCGATCAGATTGTGGAATTCAATGGTCAGCTCATCGCTGTGATTGAATACAGTCTGTACACTTTGCAGTTGGCCCCCATTCTTCGCTTGGAAAAGATAAAAACTCTCTGGTGGGATAACATGAATGAATGTCCGTATATGAGACCATGGTTTGTGGTTTGTGGTGACATGCTTCTCATTGTTGACCACTACATAAGTTTTTCATTTGGAGCACCGGTCCTCTACAGGCCATACCGTCTGGACATGTCGACCAAGCCTGCAAAATGGGTGGAGGTAAAGAAGCTGGAGAACTGGGCACTCTTCATTGGGGGTGATGCAAGGAGCCCTCCATTTTCTTTCAAGAACCCGGAGCGCTGGGGAGGGAGGAGCAACTGCTTGTACTATGCTCACTACTCTCAGCCATTGAGCCTGCATGGGTTAGGTGATGATGCAGATGCTGTGTGGGATCCTAACACTGATGACAACCTCGTGTTCAAAAGAAACTGGTACCGCCAGCTGCAGGCCTTGTGGGTGTACCCAAGCATGTTCTATTCAGCGGGAGACGGCCAGTGATTGCTGCACAAGAGCTCTGCTCTTATCATCTGATTCTGAGACTCTCTTCTGAATTCTGATGTAGGGCAGAGCATCTTAATGCTTAGCTTAATAATACTTGCAGTCGTTTTGTAGCTCAGTTGTTAGCTGCATTCTCTAGTCTAATATTTTCGAGGTGCACTGGATGCTTTTGTACCTAAACTATTAGTAGCTGTTGCTTTTATGCTGGAAGTCTGGATTCTGGAACTCGCTACCGTTGAGGATTTCCACTGGTGATGGAGATAATGTTTCGTTTTACGAGTGTTTGAGCTTAGCTGCTATATTTTGGAACATTAATATATATTCTTGTGTG] consensusID : consensus_2662#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1604 fasta sequence [ATCGCCGGAGAGGTCGCCGGCGGCATCGTCGTCCTCCCCGTCGCCGGAGATCGGACCTCCTCCACAAGGGAGTTCGGCAATCTGCCATCATGCAAAGCCCCAGCAAGATCTCTGATGCCTCTGGCTCAATGCCCCCTGCCACGTCTGTGCGCAAAGGTTCCAAGAAGAACTGCTTCACTCCATTGTTCCTCTGTTGGGCTCCTTCGTCGACATTCTCGCCTTTGCTGGCACCTGCCATTCTTGGCGTGCTGCCTTCTCATCATACCCATCAAAATCTGCCTTTCGCACCTTACTCCCACCACTCCTCGTCCGACCCAATGTCCGCGTCAAATCCCCTTGTATCCCTTCTACCAGCAATGGTCCTCACAAGCTACTACGCTCATGTCAGGTCATTGATCTAGCCAACCGAAACACCCCGCTCCGCTGCCAGATTCCTCGAGAAACTCTGCAGAAGATGCTTTTTGCAGGCTCTTCTCATGGTCAACTCATATGCTGCCGCAGTGGTTACTGTCTCGTTGTTGATGTGTTCACCGGTGCTGAGGTTTCACCACCACGTCTTCCATTCAGCAAGGACCATGAGGAGATCTACTTTTGTGGCACTCTGACGGCTCCTATCACGTCACCCAACTCACATCTCCTTATCAGCAACCGGTCATCTCTGTTCGATTGGCCGGTTGGAAGTGACTCCTGGTCTGAGCTCAAGCTTCCTGTTAATCGGGTCGATCAGATTGTGGAATTCAATGGTCAGCTCATCGCCGTGATTGAATACAAGCTGTACACTTTGCAGTTGGCCCCCAAGCTTCGCCTGAAGAAGATGAAAACCCTGTGGTGGGATGACATGAGTGAATGTCCATATTTGAGACCATGGCTAGTGGTTTGCGATGGCATGCTTCTCATTGTTGACCACTACATAACTTTGTCATTTGGAGCACCAGTCAACTACAGACCGTACCGCCTGGACATGTCAGCCAAGCCTGCAAAATGGGTGGAGGTAAAGAAGCTGGAGAACTGGGCACTCTTTATCGGGGGTGATGCGAGAAGCCCGCCGTTTGCTTTCAAGAACCCGGAGCGCTGGGGAGGGAGGAGCAACTGCTTGTACTATGCTCACTACTCCCAGCCATGGAGCCTTCATGGGTTGGGTGATGATGCAGATGCTGTGTGGGATCCTACCACTGATGATAACCTTGTGTTCAAAAGAAACTGGTACAGTCAGCTGCAGGCCTTCTGGGTGTATCCAAGCATGTTCTATTCAGACGGAGACGGCCAGTGATTGGCACACGCACGAGTGCCCTGCTCTTATTAGCTTCTTCTAAAATTGCCCCCTTGTGATGTAGAGCAGAGACTTGTGCAACTTGGCCTAGAAATCTAGGAGATCCTCATGGTGGTCTTTATGTCTAGTTTAACACTTGCAGTCGTTTTGTAGTTCAGTTATTAGCTGCATTACCATCTGATAGTAGGGTGTGACTGCACTGGATGCAAGTGTAGTTAACTAGTTGTTGCTTTTCCACTGGTGATGGTAGGTAATGTTTCGTTCTGTAAGGGTTTGGAACTTTTGTTCTTCTTCACAGCAATGGTTTGGAACACTAATGTAATGCTTGTGCACT] [+] EMBL AK107286 [ATCGCCGGAGAGGTCGCCGGCGGCATCGTCGTCCTCCCCGTCGCCGGAGATCGGACCTCCTCCACAAGGGAGTTCGGCAATCTGCCATCATGCAAAGCCCCAGCAAGATCTCTGATGCCTCTGGCTCAATGCCCCCTGCCACGTCTGTGCGCAAAGGTTCCAAGAAGAACTGCTTCACTCCATTGTTCCTCTGTTGGGCTCCTTCGTCGACATTCTCGCCTTTGCTGGCACCTGCCATTCTTGGCGTGCTGCCTTCTCATCATACCCATCAAAATCTGCCTTTCGCACCTTACTCCCACCACTCCTCGTCCGACCCAATGTCCGCGTCAAATCCCCTTGTATCCCTTCTACCAGCAATGGTCCTCACAAGCTACTACGCTCATGTCAGGTCATTGATCTAGCCAACCGAAACACCCCGCTCCGCTGCCAGATTCCTCGAGAAACTCTGCAGAAGATGCTTTTTGCAGGCTCTTCTCATGGTCAACTCATATGCTGCCGCAGTGGTTACTGTCTCGTTGTTGATGTGTTCACCGGTGCTGAGGTTTCACCACCACGTCTTCCATTCAGCAAGGACCATGAGGAGATCTACTTTTGTGGCACTCTGACGGCTCCTATCACGTCACCCAACTCACATCTCCTTATCAGCAACCGGTCATCTCTGTTCGATTGGCCGGTTGGAAGTGACTCCTGGTCTGAGCTCAAGCTTCCTGTTAATCGGGTCGATCAGATTGTGGAATTCAATGGTCAGCTCATCGCCGTGATTGAATACAAGCTGTACACTTTGCAGTTGGCCCCCAAGCTTCGCCTGAAGAAGATGAAAACCCTGTGGTGGGATGACATGAGTGAATGTCCATATTTGAGACCATGGCTAGTGGTTTGCGATGGCATGCTTCTCATTGTTGACCACTACATAACTTTGTCATTTGGAGCACCAGTCAACTACAGACCGTACCGCCTGGACATGTCAGCCAAGCCTGCAAAATGGGTGGAGGTAAAGAAGCTGGAGAACTGGGCACTCTTTATCGGGGGTGATGCGAGAAGCCCGCCGTTTGCTTTCAAGAACCCGGAGCGCTGGGGAGGGAGGAGCAACTGCTTGTACTATGCTCACTACTCCCAGCCATGGAGCCTTCATGGGTTGGGTGATGATGCAGATGCTGTGTGGGATCCTACCACTGATGATAACCTTGTGTTCAAAAGAAACTGGTACAGTCAGCTGCAGGCCTTCTGGGTGTATCCAAGCATGTTCTATTCAGACGGAGACGGCCAGTGATTGGCACACGCACGAGTGCCCTGCTCTTATTAGCTTCTTCTAAAATTGCCCCCTTGTGATGTAGAGCAGAGACTTGTGCAACTTGGCCTAGAAATCTAGGAGATCCTCATGGTGGTCTTTATGTCTAGTTTAACACTTGCAGTCGTTTTGTAGTTCAGTTATTAGCTGCATTACCATCTGATAGTAGGGTGTGACTGCACTGGATGCAAGTGTAGTTAACTAGTTGTTGCTTTTCCACTGGTGATGGTAGGTAATGTTTCGTTCTGTAAGGGTTTGGAACTTTTGTTCTTCTTCACAGCAATGGTTTGGAACACTAATGTAATGCTTGTGCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2662#0 CCGCACCGCACGCCGACATCGCCGGAGAGGGCGCCGC-----TCGCCGGCATCGTCGTCG 55 consensus_2662#1 -----------------ATCGCCGGAGAGGTCGCCGGCGGCATCGTCGTCCTCCCCGTCG 43 ************* ***** *** ** * ** ***** consensus_2662#0 CCGGAGACTCGTCCGTCCATCCGCAAGGGAGTCCAGCAATACTCCATCATGCAAAGCCCC 115 consensus_2662#1 CCGGAGATCGGACC--TCCTCCACAAGGGAGTTCGGCAATCTGCCATCATGCAAAGCCCC 101 ******* * ** * *** ********* * ***** ***************** consensus_2662#0 AGCAAGGTTTCTGAAGCCTCTGGCTCAGCACCCCCTGCCACGTCTGTGATCGAAGGTTGG 175 consensus_2662#1 AGCAAGATCTCTGATGCCTCTGGCTCAATGCCCCCTGCCACGTCTGTGCGCAAAGGTT-- 159 ****** * ***** ************ ****************** * ****** consensus_2662#0 GCAGAACTCCCAGAGGGCCTGCTTCACTCCATTGTTGCTCTATTGGGCTCTTTCCTTGAC 235 consensus_2662#1 --------CCAAGAAGAACTGCTTCACTCCATTGTTCCTCTGTTGGGCTCCTTCGTCGAC 211 ** *** * ****************** **** ******** *** * *** consensus_2662#0 CTCCTTGCCTTCACTGGCACCTGCCATTCTTGGCGTGCTGCCTTCTCATCCTACCCATCA 295 consensus_2662#1 ATTCTCGCCTTTGCTGGCACCTGCCATTCTTGGCGTGCTGCCTTCTCATCATACCCATCA 271 * ** ***** ************************************* ********* consensus_2662#0 AAATCTAACTTTCGCACCATACTCCCACCCCTCCTCGTCCGACCCAATGTCCGCGTCAAA 355 consensus_2662#1 AAATCTGCCTTTCGCACCTTACTCCCACCACTCCTCGTCCGACCCAATGTCCGCGTCAAA 331 ****** ********** ********** ****************************** consensus_2662#0 GCCCCTTATAGC---------AGCAATGGTCATCGCAAGCTAC---GCTCGTGTGAGGTC 403 consensus_2662#1 TCCCCTTGTATCCCTTCTACCAGCAATGGTCCTCACAAGCTACTACGCTCATGTCAGGTC 391 ****** ** * ********** ** ******** **** *** ***** consensus_2662#0 ATTGATCTAGCCAACCGAAACACCCCACTCCGCTGCCAGATTCCTCAAGAAACTCTGCAG 463 consensus_2662#1 ATTGATCTAGCCAACCGAAACACCCCGCTCCGCTGCCAGATTCCTCGAGAAACTCTGCAG 451 ************************** ******************* ************* consensus_2662#0 AGGATGCATTTTGCAGGTTCTTCCCATGGTCAGCTCATCTGCTGCCGCCGTGGTTATTGT 523 consensus_2662#1 AAGATGCTTTTTGCAGGCTCTTCTCATGGTCAACTCATATGCTGCCGCAGTGGTTACTGT 511 * ***** ********* ***** ******** ***** ********* ******* *** consensus_2662#0 CTTGTTGTTGATGTGTTCACCGGTGCTGAGGTTTCACCTCCACGCCTTCCATTCAGTGAG 583 consensus_2662#1 CTCGTTGTTGATGTGTTCACCGGTGCTGAGGTTTCACCACCACGTCTTCCATTCAGCAAG 571 ** *********************************** ***** *********** ** consensus_2662#0 AACTGTGATGAGTTCTACTACTGTGGCATTCTGACGGCTCCTATCACGTCACCTAACTCA 643 consensus_2662#1 GACCATGAGGAGATCTACTTTTGTGGCACTCTGACGGCTCCTATCACGTCACCCAACTCA 631 ** *** *** ****** ******* ************************ ****** consensus_2662#0 CATCTCATTATCAGCACTCAGTCCTCCCTGTTTGATTGGCCAGTTGGAAGTGACTCTTGG 703 consensus_2662#1 CATCTCCTTATCAGCAACCGGTCATCTCTGTTCGATTGGCCGGTTGGAAGTGACTCCTGG 691 ****** ********* * *** ** ***** ******** ************** *** consensus_2662#0 TCTGAGCTCAAGCTGCCCGTTAATCGGGTCGATCAGATTGTGGAATTCAATGGTCAGCTC 763 consensus_2662#1 TCTGAGCTCAAGCTTCCTGTTAATCGGGTCGATCAGATTGTGGAATTCAATGGTCAGCTC 751 ************** ** ****************************************** consensus_2662#0 ATCGCTGTGATTGAATACAGTCTGTACACTTTGCAGTTGGCCCCCATTCTTCGCTTGGAA 823 consensus_2662#1 ATCGCCGTGATTGAATACAAGCTGTACACTTTGCAGTTGGCCCCCAAGCTTCGCCTGAAG 811 ***** ************* ************************* ****** ** * consensus_2662#0 AAGATAAAAACTCTCTGGTGGGATAACATGAATGAATGTCCGTATATGAGACCATGGTTT 883 consensus_2662#1 AAGATGAAAACCCTGTGGTGGGATGACATGAGTGAATGTCCATATTTGAGACCATGGCTA 871 ***** ***** ** ********* ****** ********* *** *********** * consensus_2662#0 GTGGTTTGTGGTGACATGCTTCTCATTGTTGACCACTACATAAGTTTTTCATTTGGAGCA 943 consensus_2662#1 GTGGTTTGCGATGGCATGCTTCTCATTGTTGACCACTACATAACTTTGTCATTTGGAGCA 931 ******** * ** ***************************** *** ************ consensus_2662#0 CCGGTCCTCTACAGGCCATACCGTCTGGACATGTCGACCAAGCCTGCAAAATGGGTGGAG 1003 consensus_2662#1 CCAGTCAACTACAGACCGTACCGCCTGGACATGTCAGCCAAGCCTGCAAAATGGGTGGAG 991 ** *** ****** ** ***** *********** *********************** consensus_2662#0 GTAAAGAAGCTGGAGAACTGGGCACTCTTCATTGGGGGTGATGCAAGGAGCCCTCCATTT 1063 consensus_2662#1 GTAAAGAAGCTGGAGAACTGGGCACTCTTTATCGGGGGTGATGCGAGAAGCCCGCCGTTT 1051 ***************************** ** *********** ** ***** ** *** consensus_2662#0 TCTTTCAAGAACCCGGAGCGCTGGGGAGGGAGGAGCAACTGCTTGTACTATGCTCACTAC 1123 consensus_2662#1 GCTTTCAAGAACCCGGAGCGCTGGGGAGGGAGGAGCAACTGCTTGTACTATGCTCACTAC 1111 *********************************************************** consensus_2662#0 TCTCAGCCATTGAGCCTGCATGGGTTAGGTGATGATGCAGATGCTGTGTGGGATCCTAAC 1183 consensus_2662#1 TCCCAGCCATGGAGCCTTCATGGGTTGGGTGATGATGCAGATGCTGTGTGGGATCCTACC 1171 ** ******* ****** ******** ******************************* * consensus_2662#0 ACTGATGACAACCTCGTGTTCAAAAGAAACTGGTACCGCCAGCTGCAGGCCTTGTGGGTG 1243 consensus_2662#1 ACTGATGATAACCTTGTGTTCAAAAGAAACTGGTACAGTCAGCTGCAGGCCTTCTGGGTG 1231 ******** ***** ********************* * ************** ****** consensus_2662#0 TACCCAAGCATGTTCTATTCAGCGGGAGACGGCCAGTGATTGCT----GCACAAGAGCTC 1299 consensus_2662#1 TATCCAAGCATGTTCTATTCAGACGGAGACGGCCAGTGATTGGCACACGCACGAGTGCCC 1291 ** ******************* ****************** **** ** ** * consensus_2662#0 TGCTCTTATCATCTGATTCTGAGACTCTCTTCTGAATTCTGATGTAGGGCAGAGCATCTT 1359 consensus_2662#1 TGCTCTTATTAGCTTCTTCTAAAATTGCCCCC----TTGTGATGTAGAGCAGAGACTTGT 1347 ********* * ** **** * * * * * ** ******** ****** * * consensus_2662#0 AATGCTTAGCTTAATAATACTTGCAGTCGTTTTGTAGCTCAGTTGTTAGCTGCATTCTCT 1419 consensus_2662#1 GCAACTTGGCCTAGAAATCTAGGAGATCCTCATGGTGGTC--TTTATGTCTAGTTTAACA 1405 *** ** ** *** * ** * ** * ** ** * ** ** * consensus_2662#0 AGTCTAATATTTTCGAGGTGCACTGGATGCTTTTGTACCTAAACTATTAGTAGCTGTTGC 1479 consensus_2662#1 CTTGCAGTCGTTTTGTAGTTCAGTTATTAGCTGCATTACCAT-CTGATAGTAG--GGTGT 1462 * * * *** * ** ** * * * * * * ** ****** * ** consensus_2662#0 TTTTATGCTGGAAGTCTGGATTCTGGAACTCGCTACCGTTGAGGATTTCCACTGGTGATG 1539 consensus_2662#1 GACTGCACTGGATGCAAGTGTAGTT-AACTAGTTGTTGCT-----TTTCCACTGGTGATG 1516 * ***** * * * * **** * * * * *************** consensus_2662#0 G-AGATAATGTTTCGTTTTACGAGTGTTTGAG------------CTTAGCTGCTATATTT 1586 consensus_2662#1 GTAGGTAATGTTTCGTTCTGTAAGGGTTTGGAACTTTTGTTCTTCTTCACAGCAATGGTT 1576 * ** ************ * ** ***** *** * ** ** ** consensus_2662#0 TGGAACATTAATATATATTCTTGTGTG-- 1613 consensus_2662#1 TGGAACACTAATGTA-ATGCTTGTGCACT 1604 ******* **** ** ** ****** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||