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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2663#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1341 fasta sequence
[ACCCCTCCTTCCCCTTCCTCTCAAGCCGGCGCGGCCGACGAGCCCGCGGCAAAACCACGCAAAAAATCTGCCAAAAGAAGATCCCCCAAATCCGCCACCGCGCTCACGCCGGCGCAGCCATGGCGACCTCCTTCTCTTTCGGCTCTTCCGCCGCGTCGGGATCCACCGGCTCCTCCCCATTCTCCTTCTCCACCGGCACCGCCCCATCAGCCTTCTCCTTCTCTCAGCCCGCCGCCGCACCCGGTCTGTTCGGGGCCGCCGCGTCCGCTGCTTCCGCGCCAAGCCTTTTCTCTGGCGCCGCCACGGGCTTTGGCTTTGGCTCAGCTGCGTCGGGCACCACCACTGCCGCGACCGCTGCTGCCTCGACACCGTCTTTCGGCTTCGGGTATTCCAGGATGAACGGCTGTTGCTTCGTGAAGATGAGGCTGCTTCTGCAAGAGATACAATGTTTGAGCAATCTGAAACTGTGGAGAATGAATTGCAACATATGACAGAACAAGTGAAGTCCATCATTCAGACATTGAATGCTACTCAGGGTGCTGAGTTTGAGACTGCTGATAGTATGACACCATTTGATGTTGCTGTCCGGATACTGGATAATCAACTGCGTTCTTTAATGTGGATCGATGAGAAGGCTAATGAGTTCTCAAGTAGAATACAGAGGCTACCTAACAACAGTGCTGCAGCTGAACGTGACTCTGGAATGCCAAGGTTTTGGTTAAGCTGATGATCCAATCCTGGATGGACATTTGCATCTTGTTCTGATCGAAGCCAGTAAACATGCTATTTTTCGGTGGATGTGTTGCCCCCCAGCAAAAGTTCCACTGTTCCTCTCATTCAAGTACATGATGTACCGAACTGATGTTATTCGTTGGGATTTTAACTGCTGATGTTAACAATGCCTTGTAACAGTCGCGTACATTGGCTTCAGCAATCAGTGAACTGTTTCAACTCACTTTGGTCTTTGGACGAGGAAACAAGAGGCTTTGCGAGATACCGTTCATTATTGGTTCCAGGTGTGTTCAGATCTGTTGAGCTGAAAAGTAGATGCTATATGATGCGTTGGGTGGGCTAAGTACCTGGCTACCTGCATCAATTGAGCTACGCCTTATGAGCTTCTTACCAGGGACCAGCGGATATCTTGAGCCTTTTCTTGCGATCCTGTAATCTCAAATCGCTGTCCTCCAGTTGCACTAGAAAGCTTCGGGGTCCTGTAAGATTGCACGATTTGCATTTCTAAACTACATGCTATATGTTCGCCTAACTACTTGTGCATGGCGCGTGTTCATGATCTGCCATTATCAGATCAAGATTGCGCCTATACAAGAAAGATAATATAAT]
[+] EMBL AK064176 [ACCCCTCCTTCCCCTTCCTCTCAAGCCGGCGCGGCCGACGAGCCCGCGGCAAAACCACGCAAAAAATCTGCCAAAAGAAGATCCCCCAAATCCGCCACCGCGCTCACGCCGGCGCAGCCATGGCGACCTCCTTCTCTTTCGGCTCTTCCGCCGCGTCGGGATCCACCGGCTCCTCCCCATTCTCCTTCTCCACCGGCACCGCCCCATCAGCCTTCTCCTTCTCTCAGCCCGCCGCCGCACCCGGTCTGTTCGGGGCCGCCGCGTCCGCTGCTTCCGCGCCAAGCCTTTTCTCTGGCGCCGCCACGGGCTTTGGCTTTGGCTCAGCTGCGTCGGGCACCACCACTGCCGCGACCGCTGCTGCCTCGACACCGTCTTTCGGCTTCGGGTATTCCAGGATGAACGGCTGTTGCTTCGTGAAGATGAGGCTGCTTCTGCAAGAGATACAATGTTTGAGCAATCTGAAACTGTGGAGAATGAATTGCAACATATGACAGAACAAGTGAAGTCCATCATTCAGACATTGAATGCTACTCAGGGTGCTGAGTTTGAGACTGCTGATAGTATGACACCATTTGATGTTGCTGTCCGGATACTGGATAATCAACTGCGTTCTTTAATGTGGATCGATGAGAAGGCTAATGAGTTCTCAAGTAGAATACAGAGGCTACCTAACAACAGTGCTGCAGCTGAACGTGACTCTGGAATGCCAAGGTTTTGGTTAAGCTGATGATCCAATCCTGGATGGACATTTGCATCTTGTTCTGATCGAAGCCAGTAAACATGCTATTTTTCGGTGGATGTGTTGCCCCCCAGCAAAAGTTCCACTGTTCCTCTCATTCAAGTACATGATGTACCGAACTGATGTTATTCGTTGGGATTTTAACTGCTGATGTTAACAATGCCTTGTAACAGTCGCGTACATTGGCTTCAGCAATCAGTGAACTGTTTCAACTCACTTTGGTCTTTGGACGAGGAAACAAGAGGCTTTGCGAGATACCGTTCATTATTGGTTCCAGGTGTGTTCAGATCTGTTGAGCTGAAAAGTAGATGCTATATGATGCGTTGGGTGGGCTAAGTACCTGGCTACCTGCATCAATTGAGCTACGCCTTATGAGCTTCTTACCAGGGACCAGCGGATATCTTGAGCCTTTTCTTGCGATCCTGTAATCTCAAATCGCTGTCCTCCAGTTGCACTAGAAAGCTTCGGGGTCCTGTAAGATTGCACGATTTGCATTTCTAAACTACATGCTATATGTTCGCCTAACTACTTGTGCATGGCGCGTGTTCATGATCTGCCATTATCAGATCAAGATTGCGCCTATACAAGAAAGATAATATAAT]
consensusID : consensus_2663#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 687 fasta sequence
[CTAAGGTTGTTAAACACAACCAAGCTTGGAGAGGCAACTTGAGTTAATAAAAACTCCCCAGAAAGAGGTTGACAAGGCTCTGCAGAGCATGGAGGAGGAAGCAGAGCGGGTATTCCAGGATGAACGGCTGTTGCTTCGTGAAGATGAGGCTGCTTCTGCAAGAGATACAATGTTTGAGCAATCTGAAACTGTGGAGAATGAATTGCAACATATGACAGAACAAGTGAAGTCCATCATTCAGACATTGAATGCTACTCAGGGTGCTGAGTTTGAGACTGCTGATAGTATGGCACCATTTGATGTTGCTGTCCGGATACTGGATAATCAACTGCGTTCTTTAATGTGGATCGATGAGAAGGCTAATGAGTTCTCAAGTAGAATACAGAGGCTACCTAACAACAGTGCTGCAGCTGAACGTGACTCTGGAATGCCAAGGTTTTGGTTAAGCTGATGATCCAATCCTGGATGGACATTTGCATCTTGTTCTGATCGAAGCCAGTAAACATGCTATTTTTCGGTGGATGTGTTGCCCCCCAGCAAAAGTTTCACTGTTCCTCTCATTCAAGTACACATGTACCGAACTGATGTTATTTGTTGGGATTTTAACTGCTGATGTTAACAATGCCTTGTAACAGTCGCGTACATTGGCTTCAGCAATCAGTGAACTGTTTCAACTCAAAAAAAAAA]
[-] EMBL CA763346 [CTAAGGTTGTTAAACACAACCAAGCTTGGAGAGGCAACTTGAGTTAATAAAAACTCCCCAGAAAGAGGTTGACAAGGCTCTGCAGAGCATGGAGGAGGAAGCAGAGCGGGTATTCCAGGATGAACGGCTGTTGCTTCGTGAAGATGAGGCTGCTTCTGCAAGAGATACAATGTTTGAGCAATCTGAAACTGTGGAGAATGAATTGCAACATATGACAGAACAAGTGAAGTCCATCATTCAGACATTGAATGCTACTCAGGGTGCTGAGTTTGAGACTGCTGATAGTATGGCACCATTTGATGTTGCTGTCCGGATACTGGATAATCAACTGCGTTCTTTAATGTGGATCGATGAGAAGGCTAATGAGTTCTCAAGTAGAATACAGAGGCTACCTAACAACAGTGCTGCAGCTGAACGTGACTCTGGAATGCCAAGGTTTTGGTTAAGCTGATGATCCAATCCTGGATGGACATTTGCATCTTGTTCTGATCGAAGCCAGTAAACATGCTATTTTTCGGTGGATGTGTTGCCCCCCAGCAAAAGTTTCACTGTTCCTCTCATTCAAGTACACATGTACCGAACTGATGTTATTTGTTGGGATTTTAACTGCTGATGTTAACAATGCCTTGTAACAGTCGCGTACATTGGCTTCAGCAATCAGTGAACTGTTTCAACTCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2663#0 ACCCCTCCTTCCCCTTCCTCTCAAGCCGGCGCGGCCGACGAGCCCGCGGCAAAACCACGC 60
consensus_2663#1 ------------------------------------------------------------
consensus_2663#0 AAAAAATCTGCCAAAAGAAGATCCCCCAAATCCGCCACCGCGCTCACGCCGGCGCAGCCA 120
consensus_2663#1 ------------------------------------------------------------
consensus_2663#0 TGGCGACCTCCTTCTCTTTCGGCTCTTCCGCCGCGTCGGGATCCACCGGCTCCTCCCCAT 180
consensus_2663#1 ------------------------------------------------------------
consensus_2663#0 TCTCCTTCTCCACCGGCACCGCCCCATCAGCCTTCTCCTTCTCTCAGCCCGCCGCCGCAC 240
consensus_2663#1 ------------------------------------------------------------
consensus_2663#0 CCGGTCTGTTCGGGGCCGCCGCGTCCGCTGCTTCCGCGCCAAGCCTTTTCTCTGGCGCCG 300
consensus_2663#1 ------------------CTAAGGTTGTTAAACACA-ACCAAGCTT-------GGAGAGG 34
* * * * * ****** * ** * *
consensus_2663#0 CCACGGGCTTTGGCTTTGGCTCAGCTGCGTCGGGCACCACCACTGCCGCGACCGCTGCTG 360
consensus_2663#1 CAACTTGAGTTAATAAAAACTCCCCAGAAAGAGGT--TGACAAGGCT----CTGCAGA-G 87
* ** * ** *** * * ** ** ** * ** * *
consensus_2663#0 CCTCGACACCGTCTTTCGGCTTCGGGTATTCCAGGATGAACGGCTGTTGCTTCGTGAAGA 420
consensus_2663#1 CATGGAGGAGGAAGCAGAGC---GGGTATTCCAGGATGAACGGCTGTTGCTTCGTGAAGA 144
* * ** * ** *************************************
consensus_2663#0 TGAGGCTGCTTCTGCAAGAGATACAATGTTTGAGCAATCTGAAACTGTGGAGAATGAATT 480
consensus_2663#1 TGAGGCTGCTTCTGCAAGAGATACAATGTTTGAGCAATCTGAAACTGTGGAGAATGAATT 204
************************************************************
consensus_2663#0 GCAACATATGACAGAACAAGTGAAGTCCATCATTCAGACATTGAATGCTACTCAGGGTGC 540
consensus_2663#1 GCAACATATGACAGAACAAGTGAAGTCCATCATTCAGACATTGAATGCTACTCAGGGTGC 264
************************************************************
consensus_2663#0 TGAGTTTGAGACTGCTGATAGTATGACACCATTTGATGTTGCTGTCCGGATACTGGATAA 600
consensus_2663#1 TGAGTTTGAGACTGCTGATAGTATGGCACCATTTGATGTTGCTGTCCGGATACTGGATAA 324
************************* **********************************
consensus_2663#0 TCAACTGCGTTCTTTAATGTGGATCGATGAGAAGGCTAATGAGTTCTCAAGTAGAATACA 660
consensus_2663#1 TCAACTGCGTTCTTTAATGTGGATCGATGAGAAGGCTAATGAGTTCTCAAGTAGAATACA 384
************************************************************
consensus_2663#0 GAGGCTACCTAACAACAGTGCTGCAGCTGAACGTGACTCTGGAATGCCAAGGTTTTGGTT 720
consensus_2663#1 GAGGCTACCTAACAACAGTGCTGCAGCTGAACGTGACTCTGGAATGCCAAGGTTTTGGTT 444
************************************************************
consensus_2663#0 AAGCTGATGATCCAATCCTGGATGGACATTTGCATCTTGTTCTGATCGAAGCCAGTAAAC 780
consensus_2663#1 AAGCTGATGATCCAATCCTGGATGGACATTTGCATCTTGTTCTGATCGAAGCCAGTAAAC 504
************************************************************
consensus_2663#0 ATGCTATTTTTCGGTGGATGTGTTGCCCCCCAGCAAAAGTTCCACTGTTCCTCTCATTCA 840
consensus_2663#1 ATGCTATTTTTCGGTGGATGTGTTGCCCCCCAGCAAAAGTTTCACTGTTCCTCTCATTCA 564
***************************************** ******************
consensus_2663#0 AGTACATGATGTACCGAACTGATGTTATTCGTTGGGATTTTAACTGCTGATGTTAACAAT 900
consensus_2663#1 AGTACAC-ATGTACCGAACTGATGTTATTTGTTGGGATTTTAACTGCTGATGTTAACAAT 623
****** ********************* ******************************
consensus_2663#0 GCCTTGTAACAGTCGCGTACATTGGCTTCAGCAATCAGTGAACTGTTTCAACTCACTTTG 960
consensus_2663#1 GCCTTGTAACAGTCGCGTACATTGGCTTCAGCAATCAGTGAACTGTTTCAACTCAAAAAA 683
*******************************************************
consensus_2663#0 GTCTTTGGACGAGGAAACAAGAGGCTTTGCGAGATACCGTTCATTATTGGTTCCAGGTGT 1020
consensus_2663#1 AAAA-------------------------------------------------------- 687
consensus_2663#0 GTTCAGATCTGTTGAGCTGAAAAGTAGATGCTATATGATGCGTTGGGTGGGCTAAGTACC 1080
consensus_2663#1 ------------------------------------------------------------
consensus_2663#0 TGGCTACCTGCATCAATTGAGCTACGCCTTATGAGCTTCTTACCAGGGACCAGCGGATAT 1140
consensus_2663#1 ------------------------------------------------------------
consensus_2663#0 CTTGAGCCTTTTCTTGCGATCCTGTAATCTCAAATCGCTGTCCTCCAGTTGCACTAGAAA 1200
consensus_2663#1 ------------------------------------------------------------
consensus_2663#0 GCTTCGGGGTCCTGTAAGATTGCACGATTTGCATTTCTAAACTACATGCTATATGTTCGC 1260
consensus_2663#1 ------------------------------------------------------------
consensus_2663#0 CTAACTACTTGTGCATGGCGCGTGTTCATGATCTGCCATTATCAGATCAAGATTGCGCCT 1320
consensus_2663#1 ------------------------------------------------------------
consensus_2663#0 ATACAAGAAAGATAATATAAT 1341
consensus_2663#1 ---------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||