These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2666#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1568 fasta sequence [CATGTGTGATTACTTCTTGCAACGGATAGAGGGGGAGCAGGCCGCCGGAGACCTCGCCGACATCGTCCTCCGCGCCGGCGGGGCTGCTGCTGCTGCTGTTGCGGGCGGCGGCATCCCGTCGACGGAGTGGCAGCTACCACCGGCGGAGGAGGAGGAGGAAGAGCCGGGTCTCTTCCCGCTGCCGCCGTCGTCGTCGGATGGCTCCGGCATGAGCGGCGCGGATGCGTTCGGCGACCCGTTCGCTGGCCTCCCCGACCCCTTCGGTGGCGACTACCCCTCCTCTGGCGGAGCGGCGGCGGCCGCCGACTTCTTTGACGCCGTCGTGGCCAAGGCCGGGTTCGTCGACGTCGGTGTCCTCGGTGGCGGCGGCGGCGGTGGCTGCGATGGAGGTGGCGTTGATGGTGGTGGAGGAGGGTCGTCGCTGCTGGGCATGAGCAAGCCTATCTTGCCTAGGGCCGCCATGCAGTTGCCGTCGGTGTCGCCGAGGGCGATACGGCCGTACCCCGTGATGGCCTGTGACACGGTGAAGCTCGGCGCGCCGATGGCCGGCGGGCCGTGCGCGTTCGACGGCGCCGCCGCGGCAGGGCTGCACATGTCGTCGTCGCCGCGTGGCGCCGTCGGCGGGATCAAGCGCAGGAAGAACCAGGCTAGGAAGGTGGTGTGCATCCCAGCGCCTGCAGCAGCAGGAGGGAGGACCAGTGGGGAGGTTGTTCCTTCCGATCTCTGGGCTTGGAGGAAGTATGGCCAGAAGCCTATCAAAGGCTCTCCTTACCCAAGAGGGTACTACAGATGCAGCAGCTCGAAAGGATGCTCGGCGCGCAAGCAGGTGGAGCGCAGCCGGACCGACCCCAACATGCTCGTCATCACCTACACGTCGGAGCACAACCACCCGTGGCCGACGCAGCGCAACGCGCTCGCCGGCTCCACGCGGTCTCATCACGCCAAGAACAGCAGCAGCAACAGCAGCAGCAGCGGCGCCTCCTCAGCCTCCAAGAACAACTCCTCCCACAGCGGTTACCACCACCACCACCACCAGAAGCCACTCGTCAAGGCGGAACCCAACGATCAATCCGCCGCCGCCACGACCGCCGCCACGGTGCCGGTGAAAGAGGAGGCCGCCATGGTAGGGACGTCGTCGGAAGCATTGGCGAAGACGACGCAGAAATCCATGGAGGATGCTGCTGCTGCTGCTTCAGCCACGGCGGCGGCGGTGGAGCACAGTGATCTCATGCAGCAGATGTTCAGCCAGAGCTACCGGCCGATGATACCGGAGGCAGCGGCCGGCGGCCACCACGACGACTTCTTCGCCGACCTCGCCGAGTTGGAGTCAGATCCCATGAGCCTGATCTTCTCCAAGGAGTACATGGCGACCAATTACAAGCCAGCAGGTGACCCAGCAGGCAAGGAGATGAATGCAGTAGACAAGGGCTTGGATCCAGCGTACATGCTGGATTGGTCTTCTACCACTGTTGTTACTAGAGCTGGTGGGAGCTCATTTATGCAAGGGGAGGGAGGTTTATGACATTTTAATCACTTTGAAACAAAAGGCAAAAGCTAGTATATGCGAA] [+] EMBL AK073100 [CATGTGTGATTACTTCTTGCAACGGATAGAGGGGGAGCAGGCCGCCGGAGACCTCGCCGACATCGTCCTCCGCGCCGGCGGGGCTGCTGCTGCTGCTGTTGCGGGCGGCGGCATCCCGTCGACGGAGTGGCAGCTACCACCGGCGGAGGAGGAGGAGGAAGAGCCGGGTCTCTTCCCGCTGCCGCCGTCGTCGTCGGATGGCTCCGGCATGAGCGGCGCGGATGCGTTCGGCGACCCGTTCGCTGGCCTCCCCGACCCCTTCGGTGGCGACTACCCCTCCTCTGGCGGAGCGGCGGCGGCCGCCGACTTCTTTGACGCCGTCGTGGCCAAGGCCGGGTTCGTCGACGTCGGTGTCCTCGGTGGCGGCGGCGGCGGTGGCTGCGATGGAGGTGGCGTTGATGGTGGTGGAGGAGGGTCGTCGCTGCTGGGCATGAGCAAGCCTATCTTGCCTAGGGCCGCCATGCAGTTGCCGTCGGTGTCGCCGAGGGCGATACGGCCGTACCCCGTGATGGCCTGTGACACGGTGAAGCTCGGCGCGCCGATGGCCGGCGGGCCGTGCGCGTTCGACGGCGCCGCCGCGGCAGGGCTGCACATGTCGTCGTCGCCGCGTGGCGCCGTCGGCGGGATCAAGCGCAGGAAGAACCAGGCTAGGAAGGTGGTGTGCATCCCAGCGCCTGCAGCAGCAGGAGGGAGGACCAGTGGGGAGGTTGTTCCTTCCGATCTCTGGGCTTGGAGGAAGTATGGCCAGAAGCCTATCAAAGGCTCTCCTTACCCAAGAGGGTACTACAGATGCAGCAGCTCGAAAGGATGCTCGGCGCGCAAGCAGGTGGAGCGCAGCCGGACCGACCCCAACATGCTCGTCATCACCTACACGTCGGAGCACAACCACCCGTGGCCGACGCAGCGCAACGCGCTCGCCGGCTCCACGCGGTCTCATCACGCCAAGAACAGCAGCAGCAACAGCAGCAGCAGCGGCGCCTCCTCAGCCTCCAAGAACAACTCCTCCCACAGCGGTTACCACCACCACCACCACCAGAAGCCACTCGTCAAGGCGGAACCCAACGATCAATCCGCCGCCGCCACGACCGCCGCCACGGTGCCGGTGAAAGAGGAGGCCGCCATGGTAGGGACGTCGTCGGAAGCATTGGCGAAGACGACGCAGAAATCCATGGAGGATGCTGCTGCTGCTGCTTCAGCCACGGCGGCGGCGGTGGAGCACAGTGATCTCATGCAGCAGATGTTCAGCCAGAGCTACCGGCCGATGATACCGGAGGCAGCGGCCGGCGGCCACCACGACGACTTCTTCGCCGACCTCGCCGAGTTGGAGTCAGATCCCATGAGCCTGATCTTCTCCAAGGAGTACATGGCGACCAATTACAAGCCAGCAGGTGACCCAGCAGGCAAGGAGATGAATGCAGTAGACAAGGGCTTGGATCCAGCGTACATGCTGGATTGGTCTTCTACCACTGTTGTTACTAGAGCTGGTGGGAGCTCATTTATGCAAGGGGAGGGAGGTTTATGACATTTTAATCACTTTGAAACAAAAGGCAAAAGCTAGTATATGCGAA] consensusID : consensus_2666#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1514 fasta sequence [TAAGCTAGCCATGTGCGACTACTTCCTGCAGAGGATGGAGGGCGACCAGGCCGGCGGCGACCTCACCGACATCGTCCGCGCCGGGGGAGGGGCCATGCCGGGGAGCGTCGTCGTCGACCTCCCGTCGACGGCCGCCGAGTGGCAGCTCCCGGCTGAGCCGATGCTCTTCCCGCCGCCGCCGTCGTTGTCGTCGACGACGGACGGCTGTGGCGCCGGGGGAGCGGCAGGCGCCGACATCTTCGGCGGTGGCGGCGGCGACCTTTTCTCCGGCCTCGTGGACCCGTTCAGCAGCGACTACTCGTCCGGCGCGGACTTCTTGGACGCCATGCCGGACGCGATGGCGAAGGTCGGCTTCGACACAGCTGTCGTCGCCGGCATGCAGATGTCGTCGCCGCGCTCCGGCGGGATCAAGCGCAGGAAGAACCAGGCGAGGAAGGTGGTGTGCATCCCGGCGCCGACGGCGGCGGGAGGAAGACCCAGTGGTGAGGTGGTGCCTTCTGATCTCTGGGCTTGGAGGAAGTACGGCCAGAAGCCTATCAAGGGCTCACCCTACCCAAGAGGCTATTATAGATGCAGCAGTTCAAAAGGTTGCTCTGCAAGGAAGCAAGTAGAGCGCAGCCGTACTGACCCAAACATGCTCGTCATCACCTACACCTCGGAGCACAACCACCCATGGCCGACCCAGCGCAACGCCCTCGCCGGCTCAACCCGGTCTCACCACAGCAAGAACAGCGGCGGCGGCGGCGGCTCGGGTTCCAAGGGCTCTCAGAACGACAAGTCACAGCAGCAGCCAAGCGTTAAAGAAGAGCAGAAGGATCAGGCGACGACGGCGACGACGACGACCACCAGCACAATCACTACCACGAATAGTGCTTCTCCTGTGGTTGTGAAGGAGGAAGAGGCGGCACTGGCAGGATCGTCGGAAGCATTGGAGTTGGAGAGAGTCATGGACACTACTGCAGCTGGAGTAGTAGACCACAGTGAGCTCATGGATCATGTTTTCAGTGAGAGCTACAAGCCGATGATACCGGAGACTGGCCAGCCGGATGATTTCTTCGCAGACCTCGCCGAGTTGGAGTCAGATCCCATGAGCTTAATCTTCTCGAAGGAGTACATGGAAGCCAAGCCAAGTGGTGGCGATCATGCCCAGGAGAAGGCAATGGCCAAGGAATTGGATCCATTCGACATGCTAGACTGGTCTACTACTACTAACTCTTCGGCAGGGAGCTCATTTGAGCAAGGGAAGAGAGGCTAAACCCATGGGCATAAAGCCATGCATGAGGGTTTATGCATGCATACGGTTACATAAACTTGATCCCAGCTAATAACCATAAAGATTGTGACAATGTCAGCAAAGGAAAGATGAGATTTTTTTTTTTACTTTTCTTTTCTTCATTTGGTCTCTCTGCTTCTTCATATTATTGTGTGTGAGAATTAAATTTTGTTTCAAGGTCTAGGTATATGGACCTCATTTTTTAGGCTGTGTCAACTTGTTGTACTTATGCATGAGATGA] [+] EMBL AK110912 [TAAGCTAGCCATGTGCGACTACTTCCTGCAGAGGATGGAGGGCGACCAGGCCGGCGGCGACCTCACCGACATCGTCCGCGCCGGGGGAGGGGCCATGCCGGGGAGCGTCGTCGTCGACCTCCCGTCGACGGCCGCCGAGTGGCAGCTCCCGGCTGAGCCGATGCTCTTCCCGCCGCCGCCGTCGTTGTCGTCGACGACGGACGGCTGTGGCGCCGGGGGAGCGGCAGGCGCCGACATCTTCGGCGGTGGCGGCGGCGACCTTTTCTCCGGCCTCGTGGACCCGTTCAGCAGCGACTACTCGTCCGGCGCGGACTTCTTGGACGCCATGCCGGACGCGATGGCGAAGGTCGGCTTCGACACAGCTGTCGTCGCCGGCATGCAGATGTCGTCGCCGCGCTCCGGCGGGATCAAGCGCAGGAAGAACCAGGCGAGGAAGGTGGTGTGCATCCCGGCGCCGACGGCGGCGGGAGGAAGACCCAGTGGTGAGGTGGTGCCTTCTGATCTCTGGGCTTGGAGGAAGTACGGCCAGAAGCCTATCAAGGGCTCACCCTACCCAAGAGGCTATTATAGATGCAGCAGTTCAAAAGGTTGCTCTGCAAGGAAGCAAGTAGAGCGCAGCCGTACTGACCCAAACATGCTCGTCATCACCTACACCTCGGAGCACAACCACCCATGGCCGACCCAGCGCAACGCCCTCGCCGGCTCAACCCGGTCTCACCACAGCAAGAACAGCGGCGGCGGCGGCGGCTCGGGTTCCAAGGGCTCTCAGAACGACAAGTCACAGCAGCAGCCAAGCGTTAAAGAAGAGCAGAAGGATCAGGCGACGACGGCGACGACGACGACCACCAGCACAATCACTACCACGAATAGTGCTTCTCCTGTGGTTGTGAAGGAGGAAGAGGCGGCACTGGCAGGATCGTCGGAAGCATTGGAGTTGGAGAGAGTCATGGACACTACTGCAGCTGGAGTAGTAGACCACAGTGAGCTCATGGATCATGTTTTCAGTGAGAGCTACAAGCCGATGATACCGGAGACTGGCCAGCCGGATGATTTCTTCGCAGACCTCGCCGAGTTGGAGTCAGATCCCATGAGCTTAATCTTCTCGAAGGAGTACATGGAAGCCAAGCCAAGTGGTGGCGATCATGCCCAGGAGAAGGCAATGGCCAAGGAATTGGATCCATTCGACATGCTAGACTGGTCTACTACTACTAACTCTTCGGCAGGGAGCTCATTTGAGCAAGGGAAGAGAGGCTAAACCCATGGGCATAAAGCCATGCATGAGGGTTTATGCATGCATACGGTTACATAAACTTGATCCCAGCTAATAACCATAAAGATTGTGACAATGTCAGCAAAGGAAAGATGAGATTTTTTTTTTTACTTTTCTTTTCTTCATTTGGTCTCTCTGCTTCTTCATATTATTGTGTGTGAGAATTAAATTTTGTTTCAAGGTCTAGGTATATGGACCTCATTTTTTAGGCTGTGTCAACTTGTTGTACTTATGCATGAGATGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2666#0 CATGTGTGATTACTTCTTGCAACGGATAGAGGGGGAGCAGGCCGCCGGAGACCTCGCCGA 60 consensus_2666#1 ------------------------------------------------------------ consensus_2666#0 CATCGTCCTCCGCGCCGGCGGGGCTGCTGCTGCTGCTGTTGCGGGCGGCGGCATCCCGTC 120 consensus_2666#1 ------------------------------------------------------------ consensus_2666#0 GACGGAGTGGCAGCTACCACCGGCGGAGGAGGAGGAGGAAGAGCCGGGTCTCTTCCCGCT 180 consensus_2666#1 -----------------------------------------------------------T 1 * consensus_2666#0 GCCGCCGTCGTCGTCGGATGGCTCCGGCATGAG-CGGCGCG-GATGCGTTCGGCGACCCG 238 consensus_2666#1 AAGCTAGCCATGTGCGACTACTTCCTGCAGAGGATGGAGGGCGACCAGGCCGGCGGCGAC 61 * * * ** * *** *** * ** * * ** * ***** * consensus_2666#0 TTCGCTGGCCTCCCCGACCCCTTCGGTGGCGACTACCCCTCCTCTGGCGGAGCGGCGGCG 298 consensus_2666#1 CTCACCGACATCGTCCGCGCCGGGGGAGG-GGCCATGCC-------GGGGAGCGTCGTCG 113 ** * * * ** * * ** ** ** * * * ** * ****** ** ** consensus_2666#0 GCCGCCGACTTCTTTGACG-CCGTCG--TGGCCAAGGCCGGGTTCGTCGACGTCGGTGTC 355 consensus_2666#1 TCGACC--TCCCGTCGACGGCCGCCGAGTGGCAGCTCCCGGCTGAGCCGATGCTCTTCCC 171 * ** * * **** *** ** **** **** * * *** * * * consensus_2666#0 CTCGGTGGCGGCGGCGGCGGTGGCTGCG-ATGGAGGTGGCGTTGATGGTGGTGGAGGAGG 414 consensus_2666#1 GCCGCCGCCGTCGTTGTCGTCGACGACGGACGGCTGTGGCGCCGGGGGAGCGGCAGGCG- 230 ** * ** ** * ** * * ** * ** ****** * ** * * *** * consensus_2666#0 GTCGTCGCTGCTGGGCATGAGCAAGCCTATCTTGCCTAGGGCCGCCATGCAGTTGCCGTC 474 consensus_2666#1 -CCGACATCTTCGGCGGTGGCGGCGGCGACCTTTTCTCCGGCC-TCGTGGACCCGT---- 284 ** * ** ** * * * *** ** **** * ** * * consensus_2666#0 GGTGTCGCCGAGGGCGATACGGCCGTACCCCGTGATGGCCTGTGACACGGTGAAGCTCGG 534 consensus_2666#1 ----TCAGCAGCGACTACTCGTCCGG----CGCGGACTTCTTGGACGCCATGCCGGACGC 336 ** * * * * ** *** ** * ** *** * ** * ** consensus_2666#0 CGCGCCGATGGCCGGCGGGCCGTGCGCGTTCGACGGCGCCGCCGCGGCAGGGCTGCACAT 594 consensus_2666#1 GATGGCGAAGGTCGGC------------TTCGACACAGCTGTCGTCGCCGGCATGCAGAT 384 * *** ** **** ****** ** * ** ** ** **** ** consensus_2666#0 GTCGTCGTCGCCGCGTGGCGCCGTCGGCGGGATCAAGCGCAGGAAGAACCAGGCTAGGAA 654 consensus_2666#1 GTCGTCGCCGCG---------CTCCGGCGGGATCAAGCGCAGGAAGAACCAGGCGAGGAA 435 ******* *** * ****************************** ***** consensus_2666#0 GGTGGTGTGCATCCCAGCGCCTGCAGCAGCAGGAGGGAGGACCAGTGGGGAGGTTGTTCC 714 consensus_2666#1 GGTGGTGTGCATCCCGGCGCCGACGGCGGCGGGAGGAAGACCCAGTGGTGAGGTGGTGCC 495 *************** ***** * ** ** ***** ** ******* ***** ** ** consensus_2666#0 TTCCGATCTCTGGGCTTGGAGGAAGTATGGCCAGAAGCCTATCAAAGGCTCTCCTTACCC 774 consensus_2666#1 TTCTGATCTCTGGGCTTGGAGGAAGTACGGCCAGAAGCCTATCAAGGGCTCACCCTACCC 555 *** *********************** ***************** ***** ** ***** consensus_2666#0 AAGAGGGTACTACAGATGCAGCAGCTCGAAAGGATGCTCGGCGCGCAAGCAGGTGGAGCG 834 consensus_2666#1 AAGAGGCTATTATAGATGCAGCAGTTCAAAAGGTTGCTCTGCAAGGAAGCAAGTAGAGCG 615 ****** ** ** *********** ** ***** ***** ** * ***** ** ***** consensus_2666#0 CAGCCGGACCGACCCCAACATGCTCGTCATCACCTACACGTCGGAGCACAACCACCCGTG 894 consensus_2666#1 CAGCCGTACTGACCCAAACATGCTCGTCATCACCTACACCTCGGAGCACAACCACCCATG 675 ****** ** ***** *********************** ***************** ** consensus_2666#0 GCCGACGCAGCGCAACGCGCTCGCCGGCTCCACGCGGTCTCATCACGCCAAGAACAGCAG 954 consensus_2666#1 GCCGACCCAGCGCAACGCCCTCGCCGGCTCAACCCGGTCTCACCACAGCAAGAACAGCGG 735 ****** *********** *********** ** ******** *** ********** * consensus_2666#0 CAGCAACAGCAGC---AGCAGCGGCGCCTCCTCAGCCTCCAAGA-ACAACTCCTCCCACA 1010 consensus_2666#1 CGGCGGCGGCGGCTCGGGTTCCAAGGGCTCTCAGAACGACAAGTCACAGCAGCAGCCA-A 794 * ** * ** ** * * * *** * **** *** * * *** * consensus_2666#0 GCGGTTACCACCACCACCACCACCAGAAGCCACTCGTCAAGGCGGAACCCAACGATCAAT 1070 consensus_2666#1 GCGTTAAAGAAGAGCAGAAGGATCAGGCGACGACGGCGACGACGACGACCACCAGCACAA 854 *** * * * * ** * * *** * * * * * ** *** * * consensus_2666#0 CCGCCGCCGCCACGACCGCCGCCACGGTGCCGGTGAAAGAGGAGGCCGCCATGGTAGGGA 1130 consensus_2666#1 TCACTACCACGAATAGTGCTTCTCCTGTGGTTGTGAAGGAGGAAGAGGCGGCACTGGCAG 914 * * ** * * * ** * * *** ***** ***** * ** * * consensus_2666#0 CGTCGTCGGAAGCATTGGCGAAGACGACGCAGAAATCCATGGAGGATGCTGCTGCTGCTG 1190 consensus_2666#1 GATCGTCGGAAGCATTGGAGT------TGGAGAGAGTCATGGACACTACTGCAGCTGG-- 966 **************** * * *** * ****** * **** **** consensus_2666#0 CTTCAGCCACGGCGGCGGCGGTGGAGCACAGTGATCTCATGCAGCAGATGTTCAGCCAGA 1250 consensus_2666#1 ----------------AGTAGTAGACCACAGTGAGCTCATGGATCATGTTTTCAGTGAGA 1010 * ** ** ******** ****** * ** * ***** *** consensus_2666#0 GCTACCGGCCGATGATACCGGAGGCAGCGGCCGGCGGCCACCACGACGACTTCTTCGCCG 1310 consensus_2666#1 GCTACAAGCCGATGATACCGGAGAC---------TGGCCAGCCGGATGATTTCTTCGCAG 1061 ***** **************** * ***** * ** ** ******** * consensus_2666#0 ACCTCGCCGAGTTGGAGTCAGATCCCATGAGCCTGATCTTCTCCAAGGAGTACATGGCGA 1370 consensus_2666#1 ACCTCGCCGAGTTGGAGTCAGATCCCATGAGCTTAATCTTCTCGAAGGAGTACATGGAAG 1121 ******************************** * ******** ************* consensus_2666#0 CCAATTACAAGCCAGCAGGTGACCCAGCAGGCAAGGAGATGAATGCAGTAGACAAGGGCT 1430 consensus_2666#1 CC------AAGCCAAGTGGTGGCGATCATGCCCAGGAGAAG---GCAATGGCCAAGGAAT 1172 ** ****** **** * * * ****** * *** * * ***** * consensus_2666#0 TGGATCCAGCGTACATGCTGGATTGGTCTTCTACCACTGTTGTTACTAGAGCTGGTGGGA 1490 consensus_2666#1 TGGATCCATTCGACATGCTAGACTGGTCTACTACTACTAACTCTTCGGCAG------GGA 1226 ******** ******* ** ****** **** *** * * ** *** consensus_2666#0 GCTCATTTATGCAAGGGGAGGGAGGTTTATGACATTTTAATCACTTTGAAACAAAAGGCA 1550 consensus_2666#1 GCTCATTTGAGCAAGGGAAGAGAGGCTAAACCCATGGGCATAAAGCCATGCATGAGGGTT 1286 ******** ******* ** **** * * *** ** * * ** consensus_2666#0 AAAGCTAGTATATGCGAA------------------------------------------ 1568 consensus_2666#1 TATGCATGCATACGGTTACATAAACTTGATCCCAGCTAATAACCATAAAGATTGTGACAA 1346 * ** * *** * * consensus_2666#0 ------------------------------------------------------------ consensus_2666#1 TGTCAGCAAAGGAAAGATGAGATTTTTTTTTTTACTTTTCTTTTCTTCATTTGGTCTCTC 1406 consensus_2666#0 ------------------------------------------------------------ consensus_2666#1 TGCTTCTTCATATTATTGTGTGTGAGAATTAAATTTTGTTTCAAGGTCTAGGTATATGGA 1466 consensus_2666#0 ------------------------------------------------ consensus_2666#1 CCTCATTTTTTAGGCTGTGTCAACTTGTTGTACTTATGCATGAGATGA 1514 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||