|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2672#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1598 fasta sequence
[AAAACCCCCAAATCCCTCGTCTCGTTTGCCGCCGGCGATGGCGGCGGCGGCGCCGCCCACAGGCAAGAAGCGTAGATTCGAGCGGTCCAGCAGCCAGGAGCCACCCGGGAGCGGCGGCCTCGACCTCATCAGCGGCCTCCCCGACGCCATCCTCGGCGAAATCATCTCGCTCCTCCCCACCAAGTATGGCGCCCGCACGCAGCTCGTCTCCCGCCGGTGGCGCCCCCTGTGGCGCTCCGCGCCCCTCAACCTCGATGTTTACGATCTCTCCGGCCAGGAACGGAAGCGCGTCGCCCTTGCCTCCAAGATTCTCGCCGAACACCCTGGCCCCGCCCGCCGCTTCTCCCTCCACTGCTTCCGCCTCCGCGGCAGGCACGCCAAGCTGGACGGATGGCTCCGCTCCCGCGCCCTCGCCGATCTCCGGGAGCTTAGTTTCAGCTACGAGGTGGAGCGCGAGGCGCAGGCGCAGGCGTACCCGCTGCCGCCGTCCGCTCTGCGGTTCGCGCCCACCCTCGTCGTGCTTTACCTCAGCAGCTGCGGTTTCCCCGACGAGATGCCGCCGACGCTGCATTTCCCTCGCCTCAAGCAGCTCACGCTGTGCAGCGTCGCTATCTCCGAGGACGCCATCCATGGCGTGCTGTCACGCTGCCCTGCATTGGAGAGCCTGCTGCTGCAGGGGAATTTCGGCGTTCGCCGCCTTCGCATCAACTCCGCATCTCTCAGGAGCTTCGGCTTCTATTCGAAATCCTGGGGCTTCTCTTCTGCATCTTGGAATGGATTTGCTGGTGCCGAGTTGCAGGAGGTGGTCATCGAGGATGCCCCTTGCCTTGAAAGATTACTGCCACTTTGTCCCAATGATGGCGTGGCGGCCATCCGGGTGATCGCGGCGCCTAAACTGGAGATAATGGGACCACTCTCTGATGGCATATCTCAACTCCACCTTGGAACAACGATTTTTCAGGAAATGACTGCTGTCAGCCTTACAACCTCAATGCGAAGTGTGAAGGTTTTGGTTCTTGATTCTGATGGCCCTAATCTGGATGCAGTTGTTGACTTCCTCAGTTGCTTCCCCTGCTTGGAGAGGCTGTATATTGCTTCTCAACCGTTTAAGGTTATTAAAAATACGCGGAGGTATGACCCGCTAAATCCAATAGAATGCATTCAGTTCCATCTCAAAAAAGTGGTGATAAGAAATTATGGAGGAAGGAGGTCAGATGTCGACTTTGCCAAGTTCTTTGTTCTGAATGCAAAAGCGCTAAGAGAAATGGAGTTAGCTGGCCTTAACAATTGCAATCAGAAATGGTTGGCCAATCAACACAGGCGGCTTCAATTAGAAAAGAAAGCATCTCAAAATGCTCAATTTACATTTAAAACTACCCATACGAGTGATTTCAGTATGAACAAGCACACCCATGATTTGTCAATATCTGATCCCTTTGATAGGTCTTTATGACCATGCTGCTCTCGGATATGATACACATGCAGTCTTGTATTATGTTCAAATGTTATATTTGTACCTTCTCTTGTTTGGATTTTAGTGTCGTACTATGTCAGCAAGTTAATGAGTTATCTTTATTTAAAGCCGCAACCTAGTAAGT]
[+] EMBL AK073171 [AAAACCCCCAAATCCCTCGTCTCGTTTGCCGCCGGCGATGGCGGCGGCGGCGCCGCCCACAGGCAAGAAGCGTAGATTCGAGCGGTCCAGCAGCCAGGAGCCACCCGGGAGCGGCGGCCTCGACCTCATCAGCGGCCTCCCCGACGCCATCCTCGGCGAAATCATCTCGCTCCTCCCCACCAAGTATGGCGCCCGCACGCAGCTCGTCTCCCGCCGGTGGCGCCCCCTGTGGCGCTCCGCGCCCCTCAACCTCGATGTTTACGATCTCTCCGGCCAGGAACGGAAGCGCGTCGCCCTTGCCTCCAAGATTCTCGCCGAACACCCTGGCCCCGCCCGCCGCTTCTCCCTCCACTGCTTCCGCCTCCGCGGCAGGCACGCCAAGCTGGACGGATGGCTCCGCTCCCGCGCCCTCGCCGATCTCCGGGAGCTTAGTTTCAGCTACGAGGTGGAGCGCGAGGCGCAGGCGCAGGCGTACCCGCTGCCGCCGTCCGCTCTGCGGTTCGCGCCCACCCTCGTCGTGCTTTACCTCAGCAGCTGCGGTTTCCCCGACGAGATGCCGCCGACGCTGCATTTCCCTCGCCTCAAGCAGCTCACGCTGTGCAGCGTCGCTATCTCCGAGGACGCCATCCATGGCGTGCTGTCACGCTGCCCTGCATTGGAGAGCCTGCTGCTGCAGGGGAATTTCGGCGTTCGCCGCCTTCGCATCAACTCCGCATCTCTCAGGAGCTTCGGCTTCTATTCGAAATCCTGGGGCTTCTCTTCTGCATCTTGGAATGGATTTGCTGGTGCCGAGTTGCAGGAGGTGGTCATCGAGGATGCCCCTTGCCTTGAAAGATTACTGCCACTTTGTCCCAATGATGGCGTGGCGGCCATCCGGGTGATCGCGGCGCCTAAACTGGAGATAATGGGACCACTCTCTGATGGCATATCTCAACTCCACCTTGGAACAACGATTTTTCAGGAAATGACTGCTGTCAGCCTTACAACCTCAATGCGAAGTGTGAAGGTTTTGGTTCTTGATTCTGATGGCCCTAATCTGGATGCAGTTGTTGACTTCCTCAGTTGCTTCCCCTGCTTGGAGAGGCTGTATATTGCTTCTCAACCGTTTAAGGTTATTAAAAATACGCGGAGGTATGACCCGCTAAATCCAATAGAATGCATTCAGTTCCATCTCAAAAAAGTGGTGATAAGAAATTATGGAGGAAGGAGGTCAGATGTCGACTTTGCCAAGTTCTTTGTTCTGAATGCAAAAGCGCTAAGAGAAATGGAGTTAGCTGGCCTTAACAATTGCAATCAGAAATGGTTGGCCAATCAACACAGGCGGCTTCAATTAGAAAAGAAAGCATCTCAAAATGCTCAATTTACATTTAAAACTACCCATACGAGTGATTTCAGTATGAACAAGCACACCCATGATTTGTCAATATCTGATCCCTTTGATAGGTCTTTATGACCATGCTGCTCTCGGATATGATACACATGCAGTCTTGTATTATGTTCAAATGTTATATTTGTACCTTCTCTTGTTTGGATTTTAGTGTCGTACTATGTCAGCAAGTTAATGAGTTATCTTTATTTAAAGCCGCAACCTAGTAAGT]
consensusID : consensus_2672#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1532 fasta sequence
[ACCCCAAAATCCCTTCTCGCTCGCCGCCGGCGATGGAGGCGGCGGCGGCGGCAGCCAAGAAGCGGAGGTTTGGTCGGTCCACGGGCAAGGGATCGCTGGGTAGTGACGGCCTCGACCACATCAGCTGCCTCCCCGAAGCCATCCTCGGTGAGATCATCTCCCTCCTCCCCACCAAGGACGCCGCCCGCACGCAGGCCGTCTCCCGCCGGTGGCGCCCGCTCTGGCGCTCCACGCCCCTCAACCTCGACGTCGACTCGCTTTCCACCCAGGAGCGCAAGCGCACCATGTTCGTCTCCAGGATCCTCGCCTCCCACCCTGGCCCCGCTCGCCGCTTGTCCCTCCCCTTCTTCCGCCTCCGCGACCGGTACGCCAAGCTGGACGGATGGCTCCGCTCCCCCGCCTTCGCCGACCTCCAGGAGCTCGACTTCAGCTACGACATCGAGGACGAGGAGGCGCTCTACCCGCTGCCGCCGTCCGCGCTGCGGTTCGCTCCCACCCTCCGCGTCGTCGAACTCCGCACATGCCATTTCCCCAACGGAATGGCACCGGCGCTGCATTTCCCACGCCTGGCGCGGCTCACGCTGTACCGCGTCACCATCTCGGAGGACACCCTCCATGGCTTGCTCTCACGCTGCTCTGCATTGGAGAGCCTTTTGCTGGTGGGGAATTTCGGCATTCGTCGCCTTCGCATCAACTCCCCATTTCTCAGGAGCTTAGGCTTCTCTGCTTCTTCTTGGGAAGGATATCGTGATGCCAACTTCCAGGAGGTGGTCATCGAGGACGCTCCATGCCTCGAGAGGCTGATGCCACTTTATCCCAATCATGGTCCGGCGACCATTCGGGTGATCGCGGCGCCTAAACTGGAGGTACTAGGTGTGCTCTCTGATGGCATATCTCAACTCCACCTTGGAACAACATTTTTTCAGAAAATGATTGCTGTCAACCTGACAACCTCGATTCGAACGGTGAAGGTTTTGGTTCTTGATTCAAATGGCCCTAATCTGGATGTAGTTGTTGACTTCCTCAAATGCTTCCCCTGCTTGGAGAGGCTGTATGTTGTATCTCGCCCACATAAGGTTATCAAGAATATAAGGAGCTATGACCCACTACATCCAATAGAATGCATGGAGCTCCATCTCAGAAAAGTGGTAATAAGATATTATGAAGGCAAGAGGCCAGATGTTGACTTTGCCAAGTTCTTTGTTCTGAATGCAAAAGTGCTAAGAGAAATGGATTTCTGTAGCCCTAGCAATCGCAATCTGAAATGGCAGGATAACCAACACAGGCGCCTTTCATTGGAAAATAAGGCTTCTCAAGTTGCTCAATTTACATTTAAAACTACCTCTAGGACTAGGAATGAGTTGACTAGGAACAGGCATACACATGAATTGTCAATGTCTGATCCTTTTGATTTCTCTTCATGTCTATGCTCTTCATGTCGATTCTTCTTCCAGTTATGATGTGCTTACAGATGTCTTATATCCTGTTCAAATACTAGCATATTTTGTACCTGCTCTTATTTGTATCTTAAA]
[+] EMBL AK108035 [ACCCCAAAATCCCTTCTCGCTCGCCGCCGGCGATGGAGGCGGCGGCGGCGGCAGCCAAGAAGCGGAGGTTTGGTCGGTCCACGGGCAAGGGATCGCTGGGTAGTGACGGCCTCGACCACATCAGCTGCCTCCCCGAAGCCATCCTCGGTGAGATCATCTCCCTCCTCCCCACCAAGGACGCCGCCCGCACGCAGGCCGTCTCCCGCCGGTGGCGCCCGCTCTGGCGCTCCACGCCCCTCAACCTCGACGTCGACTCGCTTTCCACCCAGGAGCGCAAGCGCACCATGTTCGTCTCCAGGATCCTCGCCTCCCACCCTGGCCCCGCTCGCCGCTTGTCCCTCCCCTTCTTCCGCCTCCGCGACCGGTACGCCAAGCTGGACGGATGGCTCCGCTCCCCCGCCTTCGCCGACCTCCAGGAGCTCGACTTCAGCTACGACATCGAGGACGAGGAGGCGCTCTACCCGCTGCCGCCGTCCGCGCTGCGGTTCGCTCCCACCCTCCGCGTCGTCGAACTCCGCACATGCCATTTCCCCAACGGAATGGCACCGGCGCTGCATTTCCCACGCCTGGCGCGGCTCACGCTGTACCGCGTCACCATCTCGGAGGACACCCTCCATGGCTTGCTCTCACGCTGCTCTGCATTGGAGAGCCTTTTGCTGGTGGGGAATTTCGGCATTCGTCGCCTTCGCATCAACTCCCCATTTCTCAGGAGCTTAGGCTTCTCTGCTTCTTCTTGGGAAGGATATCGTGATGCCAACTTCCAGGAGGTGGTCATCGAGGACGCTCCATGCCTCGAGAGGCTGATGCCACTTTATCCCAATCATGGTCCGGCGACCATTCGGGTGATCGCGGCGCCTAAACTGGAGGTACTAGGTGTGCTCTCTGATGGCATATCTCAACTCCACCTTGGAACAACATTTTTTCAGAAAATGATTGCTGTCAACCTGACAACCTCGATTCGAACGGTGAAGGTTTTGGTTCTTGATTCAAATGGCCCTAATCTGGATGTAGTTGTTGACTTCCTCAAATGCTTCCCCTGCTTGGAGAGGCTGTATGTTGTATCTCGCCCACATAAGGTTATCAAGAATATAAGGAGCTATGACCCACTACATCCAATAGAATGCATGGAGCTCCATCTCAGAAAAGTGGTAATAAGATATTATGAAGGCAAGAGGCCAGATGTTGACTTTGCCAAGTTCTTTGTTCTGAATGCAAAAGTGCTAAGAGAAATGGATTTCTGTAGCCCTAGCAATCGCAATCTGAAATGGCAGGATAACCAACACAGGCGCCTTTCATTGGAAAATAAGGCTTCTCAAGTTGCTCAATTTACATTTAAAACTACCTCTAGGACTAGGAATGAGTTGACTAGGAACAGGCATACACATGAATTGTCAATGTCTGATCCTTTTGATTTCTCTTCATGTCTATGCTCTTCATGTCGATTCTTCTTCCAGTTATGATGTGCTTACAGATGTCTTATATCCTGTTCAAATACTAGCATATTTTGTACCTGCTCTTATTTGTATCTTAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2672#0 AAAACCCCCAAATCCCTCGTCTCGTTTGCCGCCGGCGATGGCGGCGGCGGCGCCGCCCAC 60
consensus_2672#1 ---ACCCCAAAATCCCT--TCTCGCTCGCCGCCGGCGATGGAGGCGGCGGCGGCG---GC 52
***** ******** ***** * ************** ********** ** *
consensus_2672#0 AGGCAAGAAGCGTAGATTCGAGCGGTCCAGCAGCCAGGAGCCACCCGGGAGCGGCGGCCT 120
consensus_2672#1 AGCCAAGAAGCGGAGGTTTGGTCGGTCCACGGGCAAGGGATCGCTGGGTAGTGACGGCCT 112
** ********* ** ** * ******* ** *** * * ** ** * ******
consensus_2672#0 CGACCTCATCAGCGGCCTCCCCGACGCCATCCTCGGCGAAATCATCTCGCTCCTCCCCAC 180
consensus_2672#1 CGACCACATCAGCTGCCTCCCCGAAGCCATCCTCGGTGAGATCATCTCCCTCCTCCCCAC 172
***** ******* ********** *********** ** ******** ***********
consensus_2672#0 CAAGTATGGCGCCCGCACGCAGCTCGTCTCCCGCCGGTGGCGCCCCCTGTGGCGCTCCGC 240
consensus_2672#1 CAAGGACGCCGCCCGCACGCAGGCCGTCTCCCGCCGGTGGCGCCCGCTCTGGCGCTCCAC 232
**** * * ************* ********************* ** ********* *
consensus_2672#0 GCCCCTCAACCTCGATGTTTACGATCTCTCCGGCCAGGAACGGAAGCGCGTCGCCCTTGC 300
consensus_2672#1 GCCCCTCAACCTCGACGTCGACTCGCTTTCCACCCAGGAGCGCAAGCGCACCATGTTCGT 292
*************** ** ** ** *** ****** ** ****** * * *
consensus_2672#0 CTCCAAGATTCTCGCCGAACACCCTGGCCCCGCCCGCCGCTTCTCCCTCCACTGCTTCCG 360
consensus_2672#1 CTCCAGGATCCTCGCCTCCCACCCTGGCCCCGCTCGCCGCTTGTCCCTCCCCTTCTTCCG 352
***** *** ****** ************** ******** ******* ** ******
consensus_2672#0 CCTCCGCGGCAGGCACGCCAAGCTGGACGGATGGCTCCGCTCCCGCGCCCTCGCCGATCT 420
consensus_2672#1 CCTCCGCGACCGGTACGCCAAGCTGGACGGATGGCTCCGCTCCCCCGCCTTCGCCGACCT 412
******** * ** ****************************** **** ******* **
consensus_2672#0 CCGGGAGCTTAGTTTCAGCTACGAGGTGGAGCGCGAGGCGCAGGCGCAGGCGTACCCGCT 480
consensus_2672#1 CCAGGAGCTCGACTTCAGCTACGACATCGAGGACGAGG---AGGCGC---TCTACCCGCT 466
** ****** *********** * *** ***** ****** ********
consensus_2672#0 GCCGCCGTCCGCTCTGCGGTTCGCGCCCACCCTCGTCGTGCTTTACCTCAGCAGCTGCGG 540
consensus_2672#1 GCCGCCGTCCGCGCTGCGGTTCGCTCCCACCCTCCGCGTCGTCGAACTCCGCACATGCCA 526
************ *********** ********* *** * * *** *** ***
consensus_2672#0 TTTCCCCGACGAGATGCCGCCGACGCTGCATTTCCCTCGCCTCAAGCAGCTCACGCTGTG 600
consensus_2672#1 TTTCCCCAACGGAATGGCACCGGCGCTGCATTTCCCACGCCTGGCGCGGCTCACGCTGTA 586
******* *** *** * *** ************* ***** ** ***********
consensus_2672#0 CAGCGTCGCTATCTCCGAGGACGCCATCCATGGCGTGCTGTCACGCTGCCCTGCATTGGA 660
consensus_2672#1 CCGCGTCACCATCTCGGAGGACACCCTCCATGGCTTGCTCTCACGCTGCTCTGCATTGGA 646
* ***** * ***** ****** ** ******** **** ********* **********
consensus_2672#0 GAGCCTGCTGCTGCAGGGGAATTTCGGCGTTCGCCGCCTTCGCATCAACTCCGCATCTCT 720
consensus_2672#1 GAGCCTTTTGCTGGTGGGGAATTTCGGCATTCGTCGCCTTCGCATCAACTCCCCATTTCT 706
****** ***** ************* **** ****************** *** ***
consensus_2672#0 CAGGAGCTTCGGCTTCTATTCGAAATCCTGGGGCTTCTCTTCTGCATCTTGGAATGGATT 780
consensus_2672#1 CAGGAGCTT---------------------AGGCTTCTCTGCTTCTTCTTGGGAAGGATA 745
********* ********* ** * ****** * ****
consensus_2672#0 TGCTGGTGCCGAGTTGCAGGAGGTGGTCATCGAGGATGCCCCTTGCCTTGAAAGATTACT 840
consensus_2672#1 TCGTGATGCCAACTTCCAGGAGGTGGTCATCGAGGACGCTCCATGCCTCGAGAGGCTGAT 805
* ** **** * ** ******************** ** ** ***** ** ** * *
consensus_2672#0 GCCACTTTGTCCCAATGATGGCGTGGCGGCCATCCGGGTGATCGCGGCGCCTAAACTGGA 900
consensus_2672#1 GCCACTTTATCCCAATCATGGTCCGGCGACCATTCGGGTGATCGCGGCGCCTAAACTGGA 865
******** ******* **** **** **** **************************
consensus_2672#0 GATAATGGGACCACTCTCTGATGGCATATCTCAACTCCACCTTGGAACAACGATTTTTCA 960
consensus_2672#1 GGTACTAGGTGTGCTCTCTGATGGCATATCTCAACTCCACCTTGGAACAACATTTTTTCA 925
* ** * ** ************************************** *******
consensus_2672#0 GGAAATGACTGCTGTCAGCCTTACAACCTCAATGCGAAGTGTGAAGGTTTTGGTTCTTGA 1020
consensus_2672#1 GAAAATGATTGCTGTCAACCTGACAACCTCGATTCGAACGGTGAAGGTTTTGGTTCTTGA 985
* ****** ******** *** ******** ** **** ********************
consensus_2672#0 TTCTGATGGCCCTAATCTGGATGCAGTTGTTGACTTCCTCAGTTGCTTCCCCTGCTTGGA 1080
consensus_2672#1 TTCAAATGGCCCTAATCTGGATGTAGTTGTTGACTTCCTCAAATGCTTCCCCTGCTTGGA 1045
*** ****************** ***************** *****************
consensus_2672#0 GAGGCTGTATATTGCTTCTCAACCGTTTAAGGTTATTAAAAATACGCGGAGGTATGACCC 1140
consensus_2672#1 GAGGCTGTATGTTGTATCTCGCCCACATAAGGTTATCAAGAATATAAGGAGCTATGACCC 1105
********** *** **** ** ********* ** **** **** ********
consensus_2672#0 GCTAAATCCAATAGAATGCATTCAGTTCCATCTCAAAAAAGTGGTGATAAGAAATTATGG 1200
consensus_2672#1 ACTACATCCAATAGAATGCATGGAGCTCCATCTCAGAAAAGTGGTAATAAGATATTATGA 1165
*** **************** ** ********* ********* ****** ******
consensus_2672#0 AGGAAGGAGGTCAGATGTCGACTTTGCCAAGTTCTTTGTTCTGAATGCAAAAGCGCTAAG 1260
consensus_2672#1 AGGCAAGAGGCCAGATGTTGACTTTGCCAAGTTCTTTGTTCTGAATGCAAAAGTGCTAAG 1225
*** * **** ******* ********************************** ******
consensus_2672#0 AGAAATGGAGTTAGCTGGCCTTAACAATTGCAATCAGAAATGGTTGGCCAATCAACACAG 1320
consensus_2672#1 AGAAATGGATTTCTGTAGCCCTAGCAATCGCAATCTGAAATGGCAGGATAACCAACACAG 1285
********* ** * *** ** **** ****** ******* ** ** ********
consensus_2672#0 GCGGCTTCAATTAGAAAAGAAAGCATCTCAAAATGCTCAATTTACATTTAAAACTACCCA 1380
consensus_2672#1 GCGCCTTTCATTGGAAAATAAGGCTTCTCAAGTTGCTCAATTTACATTTAAAACTACCTC 1345
*** *** *** ***** ** ** ****** *************************
consensus_2672#0 TACGA------GTGATTTCAGTATGAACAAGCACACCCATGATTTGTCAATATCTGATCC 1434
consensus_2672#1 TAGGACTAGGAATGAGTTGACTAGGAACAGGCATACACATGAATTGTCAATGTCTGATCC 1405
** ** *** ** * ** ***** *** ** ***** ******** ********
consensus_2672#0 CTTTGATAGGTCTTTATGACCATGCTGCTCTCGGATATGATACACATGCAGTCTTGTATT 1494
consensus_2672#1 TTTTGATTTCTCTTCATGTCTATGCTCTTCATGTCGAT--TCTTCTTCCAGT----TATG 1459
****** **** *** * ***** ** * ** * * * **** ***
consensus_2672#0 ATGTTCAAATGTTATATTTGTACCTTCTCTTGTTTGGATTTTAGTGTCGTACTATGTCAG 1554
consensus_2672#1 ATGTGC-----TTACAGATGTCTTATATCCTGTTCAAATACTAGCAT-ATTTTGTACCTG 1513
**** * *** * *** * ** **** ** *** * * * * * *
consensus_2672#0 CAAGTTAATGAGTTATCTTTATTTAAAGCCGCAACCTAGTAAGT 1598
consensus_2672#1 CTC---------TTATTTGTATCTTAAA---------------- 1532
* **** * *** * **
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||