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Oryza sativa
cluster # 2673 cluster # 2673       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2673#0 length = 1020 sequences # 1  
consensus_2673#1 length = 781 sequences # 1  

consensusID : consensus_2673#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1020
fasta sequence
                              [CTACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATAGTGTTTTGTTGTACTAAACATATTTCTGCAGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTTTGAGATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAGGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGGTCATCGGAACGTATGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAACCCAAGAACAGACCATTGATGTCTTCAGTTGTTATGATGCTAGCCAGTGAGAATGCCACGTTGCCACAGCCAAATGAGCCTGGAGTGAACATTGGGAAGATCACATTAGACACAGAATCATCTCATGGACTTACCAGCAATGGTGTGACGACAACTACAATAGAGGCTAGGTAGTCTGAAACAGTAAATTCTCCTTGCTCTAACAGTAAGTCTGTAGTTCTGTATAGCGAGTCAAAACCTCATGCAAAGCTCTGCTGAAACTAGTTCACTTATAACGAGTCTTGAAAACTTGTAAGTTGTAAGACCACATTAGACAAGGTCATGATTGTTGCAATGCACTAGTTGTAGGTTAGAGACATTGTCTGGCGTGTGATGGAGCCGACAAAACTGGTTAAATGATTTGTGTAAAAGGCTAACAGTATTTAAGC]

[+] EMBL AK109693             [CTACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATAGTGTTTTGTTGTACTAAACATATTTCTGCAGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTTTGAGATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAGGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGGTCATCGGAACGTATGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAACCCAAGAACAGACCATTGATGTCTTCAGTTGTTATGATGCTAGCCAGTGAGAATGCCACGTTGCCACAGCCAAATGAGCCTGGAGTGAACATTGGGAAGATCACATTAGACACAGAATCATCTCATGGACTTACCAGCAATGGTGTGACGACAACTACAATAGAGGCTAGGTAGTCTGAAACAGTAAATTCTCCTTGCTCTAACAGTAAGTCTGTAGTTCTGTATAGCGAGTCAAAACCTCATGCAAAGCTCTGCTGAAACTAGTTCACTTATAACGAGTCTTGAAAACTTGTAAGTTGTAAGACCACATTAGACAAGGTCATGATTGTTGCAATGCACTAGTTGTAGGTTAGAGACATTGTCTGGCGTGTGATGGAGCCGACAAAACTGGTTAAATGATTTGTGTAAAAGGCTAACAGTATTTAAGC]


>consensus_2673#0 CTACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATAGTGTTTTGTTG TACTAAACATATTTCTGCAGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTT TGAGATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAG GATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAA AGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAG AAAGGTCATCGGAACGTATGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTC CATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAG GAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGCATGGATGTT GTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGA CAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAACCCAAGAA CAGACCATTGATGTCTTCAGTTGTTATGATGCTAGCCAGTGAGAATGCCACGTTGCCACA GCCAAATGAGCCTGGAGTGAACATTGGGAAGATCACATTAGACACAGAATCATCTCATGG ACTTACCAGCAATGGTGTGACGACAACTACAATAGAGGCTAGGTAGTCTGAAACAGTAAA TTCTCCTTGCTCTAACAGTAAGTCTGTAGTTCTGTATAGCGAGTCAAAACCTCATGCAAA GCTCTGCTGAAACTAGTTCACTTATAACGAGTCTTGAAAACTTGTAAGTTGTAAGACCAC ATTAGACAAGGTCATGATTGTTGCAATGCACTAGTTGTAGGTTAGAGACATTGTCTGGCG TGTGATGGAGCCGACAAAACTGGTTAAATGATTTGTGTAAAAGGCTAACAGTATTTAAGC



consensusID : consensus_2673#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 781
fasta sequence
                              [CACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATATGTGTTTTGTTGTACTAAACCTATTTCTGCCGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTTTGACATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAGGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGGTCATCGGAACGTAGTGAGTACTCTCGTAGTTTGTTTATATGTATATAGCTACAAAACTGGGACTGCACAATGACTTTCGAGATGGTCCAGTGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGTAAGTGCAAATTATTTGTCACAATTGCTCTGGTGAATCTTGTCACATTATTGCCTTATTGGCATTTTGATGATTTTCCAGGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAAACCCAGAACAGACCATTGATGTCTTCAGTTG]

[+] EMBL CB680321             [CACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATATGTGTTTTGTTGTACTAAACCTATTTCTGCCGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTTTGACATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAGGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGGTCATCGGAACGTAGTGAGTACTCTCGTAGTTTGTTTATATGTATATAGCTACAAAACTGGGACTGCACAATGACTTTCGAGATGGTCCAGTGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGTAAGTGCAAATTATTTGTCACAATTGCTCTGGTGAATCTTGTCACATTATTGCCTTATTGGCATTTTGATGATTTTCCAGGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAAACCCAGAACAGACCATTGATGTCTTCAGTTG]


>consensus_2673#1 CACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATATGTGTTTTGTTG TACTAAACCTATTTCTGCCGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTT TGACATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAG GATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAA AGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAG AAAGGTCATCGGAACGTAGTGAGTACTCTCGTAGTTTGTTTATATGTATATAGCTACAAA ACTGGGACTGCACAATGACTTTCGAGATGGTCCAGTGGCTATATGTCTCCAGAGTATGCA ATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAG ATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTC AGATATGTAAGTGCAAATTATTTGTCACAATTGCTCTGGTGAATCTTGTCACATTATTGC CTTATTGGCATTTTGATGATTTTCCAGGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTG GACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTA CACGTCGCTCTGTTGTGCGTTGAAGTGGAAACCCAGAACAGACCATTGATGTCTTCAGTT G



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2673#0      CTACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATA-GTGTTTTGTT 59
consensus_2673#1      -CACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATATGTGTTTTGTT 59
                        *********************************************** **********

consensus_2673#0      GTACTAAACATATTTCTGCAGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGT 119
consensus_2673#1      GTACTAAACCTATTTCTGCCGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGT 119
                      ********* ********* ****************************************

consensus_2673#0      TTGAGATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTA 179
consensus_2673#1      TTGACATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTA 179
                      **** *******************************************************

consensus_2673#0      GGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAA 239
consensus_2673#1      GGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAA 239
                      ************************************************************

consensus_2673#0      AAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTA 299
consensus_2673#1      AAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTA 299
                      ************************************************************

consensus_2673#0      GAAAGGTCATCGGAACGTA----------------------------------------- 318
consensus_2673#1      GAAAGGTCATCGGAACGTAGTGAGTACTCTCGTAGTTTGTTTATATGTATATAGCTACAA 359
                      *******************                                         

consensus_2673#0      ------------------------------------TGGCTATATGTCTCCAGAGTATGC 342
consensus_2673#1      AACTGGGACTGCACAATGACTTTCGAGATGGTCCAGTGGCTATATGTCTCCAGAGTATGC 419
                                                          ************************

consensus_2673#0      AATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGA 402
consensus_2673#1      AATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGA 479
                      ************************************************************

consensus_2673#0      GATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCT 462
consensus_2673#1      GATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCT 539
                      ************************************************************

consensus_2673#0      CAGATATG---------------------------------------------------- 470
consensus_2673#1      CAGATATGTAAGTGCAAATTATTTGTCACAATTGCTCTGGTGAATCTTGTCACATTATTG 599
                      ********                                                    

consensus_2673#0      -----------------------------CATGGATGTTGTGGAAAGAAGGTAAGAGTGT 501
consensus_2673#1      CCTTATTGGCATTTTGATGATTTTCCAGGCATGGATGTTGTGGAAAGAAGGTAAGAGTGT 659
                                                   *******************************

consensus_2673#0      GGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGT 561
consensus_2673#1      GGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGT 719
                      ************************************************************

consensus_2673#0      ACACGTCGCTCTGTTGTGCGTTGAAGTGGAACCCAAGAACAGACCATTGATGTCTTCAGT 621
consensus_2673#1      ACACGTCGCTCTGTTGTGCGTTGAAGTGGAAACCCAGAACAGACCATTGATGTCTTCAGT 779
                      ******************************* ** *************************

consensus_2673#0      TGTTATGATGCTAGCCAGTGAGAATGCCACGTTGCCACAGCCAAATGAGCCTGGAGTGAA 681
consensus_2673#1      TG---------------------------------------------------------- 781
                      **                                                          

consensus_2673#0      CATTGGGAAGATCACATTAGACACAGAATCATCTCATGGACTTACCAGCAATGGTGTGAC 741
consensus_2673#1      ------------------------------------------------------------
                                                                                  

consensus_2673#0      GACAACTACAATAGAGGCTAGGTAGTCTGAAACAGTAAATTCTCCTTGCTCTAACAGTAA 801
consensus_2673#1      ------------------------------------------------------------
                                                                                  

consensus_2673#0      GTCTGTAGTTCTGTATAGCGAGTCAAAACCTCATGCAAAGCTCTGCTGAAACTAGTTCAC 861
consensus_2673#1      ------------------------------------------------------------
                                                                                  

consensus_2673#0      TTATAACGAGTCTTGAAAACTTGTAAGTTGTAAGACCACATTAGACAAGGTCATGATTGT 921
consensus_2673#1      ------------------------------------------------------------
                                                                                  

consensus_2673#0      TGCAATGCACTAGTTGTAGGTTAGAGACATTGTCTGGCGTGTGATGGAGCCGACAAAACT 981
consensus_2673#1      ------------------------------------------------------------
                                                                                  

consensus_2673#0      GGTTAAATGATTTGTGTAAAAGGCTAACAGTATTTAAGC 1020
consensus_2673#1      ---------------------------------------
                                                             




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)