These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2673#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1020 fasta sequence [CTACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATAGTGTTTTGTTGTACTAAACATATTTCTGCAGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTTTGAGATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAGGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGGTCATCGGAACGTATGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAACCCAAGAACAGACCATTGATGTCTTCAGTTGTTATGATGCTAGCCAGTGAGAATGCCACGTTGCCACAGCCAAATGAGCCTGGAGTGAACATTGGGAAGATCACATTAGACACAGAATCATCTCATGGACTTACCAGCAATGGTGTGACGACAACTACAATAGAGGCTAGGTAGTCTGAAACAGTAAATTCTCCTTGCTCTAACAGTAAGTCTGTAGTTCTGTATAGCGAGTCAAAACCTCATGCAAAGCTCTGCTGAAACTAGTTCACTTATAACGAGTCTTGAAAACTTGTAAGTTGTAAGACCACATTAGACAAGGTCATGATTGTTGCAATGCACTAGTTGTAGGTTAGAGACATTGTCTGGCGTGTGATGGAGCCGACAAAACTGGTTAAATGATTTGTGTAAAAGGCTAACAGTATTTAAGC] [+] EMBL AK109693 [CTACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATAGTGTTTTGTTGTACTAAACATATTTCTGCAGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTTTGAGATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAGGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGGTCATCGGAACGTATGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAACCCAAGAACAGACCATTGATGTCTTCAGTTGTTATGATGCTAGCCAGTGAGAATGCCACGTTGCCACAGCCAAATGAGCCTGGAGTGAACATTGGGAAGATCACATTAGACACAGAATCATCTCATGGACTTACCAGCAATGGTGTGACGACAACTACAATAGAGGCTAGGTAGTCTGAAACAGTAAATTCTCCTTGCTCTAACAGTAAGTCTGTAGTTCTGTATAGCGAGTCAAAACCTCATGCAAAGCTCTGCTGAAACTAGTTCACTTATAACGAGTCTTGAAAACTTGTAAGTTGTAAGACCACATTAGACAAGGTCATGATTGTTGCAATGCACTAGTTGTAGGTTAGAGACATTGTCTGGCGTGTGATGGAGCCGACAAAACTGGTTAAATGATTTGTGTAAAAGGCTAACAGTATTTAAGC] consensusID : consensus_2673#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 781 fasta sequence [CACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATATGTGTTTTGTTGTACTAAACCTATTTCTGCCGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTTTGACATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAGGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGGTCATCGGAACGTAGTGAGTACTCTCGTAGTTTGTTTATATGTATATAGCTACAAAACTGGGACTGCACAATGACTTTCGAGATGGTCCAGTGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGTAAGTGCAAATTATTTGTCACAATTGCTCTGGTGAATCTTGTCACATTATTGCCTTATTGGCATTTTGATGATTTTCCAGGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAAACCCAGAACAGACCATTGATGTCTTCAGTTG] [+] EMBL CB680321 [CACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATATGTGTTTTGTTGTACTAAACCTATTTCTGCCGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGTTTGACATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTAGGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAAAAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTAGAAAGGTCATCGGAACGTAGTGAGTACTCTCGTAGTTTGTTTATATGTATATAGCTACAAAACTGGGACTGCACAATGACTTTCGAGATGGTCCAGTGGCTATATGTCTCCAGAGTATGCAATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGAGATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCTCAGATATGTAAGTGCAAATTATTTGTCACAATTGCTCTGGTGAATCTTGTCACATTATTGCCTTATTGGCATTTTGATGATTTTCCAGGCATGGATGTTGTGGAAAGAAGGTAAGAGTGTGGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGTACACGTCGCTCTGTTGTGCGTTGAAGTGGAAACCCAGAACAGACCATTGATGTCTTCAGTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2673#0 CTACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATA-GTGTTTTGTT 59 consensus_2673#1 -CACATAAACATTACATAATTATTTTTCTCAATTAAATGTATACACATATGTGTTTTGTT 59 *********************************************** ********** consensus_2673#0 GTACTAAACATATTTCTGCAGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGT 119 consensus_2673#1 GTACTAAACCTATTTCTGCCGACGAAGGAAATCGTAAACTGCTAAGTTGGAACAAACGGT 119 ********* ********* **************************************** consensus_2673#0 TTGAGATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTA 179 consensus_2673#1 TTGACATCATTCTAGGGATTGCACGGGGCCTATTATATCTCCATGAAGATTCAAGGTTTA 179 **** ******************************************************* consensus_2673#0 GGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAA 239 consensus_2673#1 GGATCATCCACAGGGATCTGAAGGCAAGCAACGTGTTATTAGACAGAAACATGGTACCAA 239 ************************************************************ consensus_2673#0 AAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTA 299 consensus_2673#1 AAGTCTCAGACTTCGGCATCGCGAGAATGTTTGAAGGTGATCAAACCACTGCATACACTA 299 ************************************************************ consensus_2673#0 GAAAGGTCATCGGAACGTA----------------------------------------- 318 consensus_2673#1 GAAAGGTCATCGGAACGTAGTGAGTACTCTCGTAGTTTGTTTATATGTATATAGCTACAA 359 ******************* consensus_2673#0 ------------------------------------TGGCTATATGTCTCCAGAGTATGC 342 consensus_2673#1 AACTGGGACTGCACAATGACTTTCGAGATGGTCCAGTGGCTATATGTCTCCAGAGTATGC 419 ************************ consensus_2673#0 AATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGA 402 consensus_2673#1 AATGGACGGTGTGTTTTCCATGAAATCCGACGTCTTCAGCTTTGGCGTCCTAGTACTGGA 479 ************************************************************ consensus_2673#0 GATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCT 462 consensus_2673#1 GATTGTCGCCGGCAGGAGGAATCGAGGCTTTTGTGAATCCGAAATTAATCTCAACCTCCT 539 ************************************************************ consensus_2673#0 CAGATATG---------------------------------------------------- 470 consensus_2673#1 CAGATATGTAAGTGCAAATTATTTGTCACAATTGCTCTGGTGAATCTTGTCACATTATTG 599 ******** consensus_2673#0 -----------------------------CATGGATGTTGTGGAAAGAAGGTAAGAGTGT 501 consensus_2673#1 CCTTATTGGCATTTTGATGATTTTCCAGGCATGGATGTTGTGGAAAGAAGGTAAGAGTGT 659 ******************************* consensus_2673#0 GGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGT 561 consensus_2673#1 GGACTTACTGGATGAGTTAATTGGAGACATCTTTGATGACAACGAAGTGTTGAGATGTGT 719 ************************************************************ consensus_2673#0 ACACGTCGCTCTGTTGTGCGTTGAAGTGGAACCCAAGAACAGACCATTGATGTCTTCAGT 621 consensus_2673#1 ACACGTCGCTCTGTTGTGCGTTGAAGTGGAAACCCAGAACAGACCATTGATGTCTTCAGT 779 ******************************* ** ************************* consensus_2673#0 TGTTATGATGCTAGCCAGTGAGAATGCCACGTTGCCACAGCCAAATGAGCCTGGAGTGAA 681 consensus_2673#1 TG---------------------------------------------------------- 781 ** consensus_2673#0 CATTGGGAAGATCACATTAGACACAGAATCATCTCATGGACTTACCAGCAATGGTGTGAC 741 consensus_2673#1 ------------------------------------------------------------ consensus_2673#0 GACAACTACAATAGAGGCTAGGTAGTCTGAAACAGTAAATTCTCCTTGCTCTAACAGTAA 801 consensus_2673#1 ------------------------------------------------------------ consensus_2673#0 GTCTGTAGTTCTGTATAGCGAGTCAAAACCTCATGCAAAGCTCTGCTGAAACTAGTTCAC 861 consensus_2673#1 ------------------------------------------------------------ consensus_2673#0 TTATAACGAGTCTTGAAAACTTGTAAGTTGTAAGACCACATTAGACAAGGTCATGATTGT 921 consensus_2673#1 ------------------------------------------------------------ consensus_2673#0 TGCAATGCACTAGTTGTAGGTTAGAGACATTGTCTGGCGTGTGATGGAGCCGACAAAACT 981 consensus_2673#1 ------------------------------------------------------------ consensus_2673#0 GGTTAAATGATTTGTGTAAAAGGCTAACAGTATTTAAGC 1020 consensus_2673#1 --------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||