These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2679#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 635 fasta sequence [CTCGAGTTTGTTTTTCCCTTTTTGGATGTGACATTTTATCAGGCAGATTATATGGGACCTGTTAGATAATTACAGGCTATAGCTAGCTTTGCATTTACAGATAAAAGCGCGACTAGTGAAAGAAGAAAACTATCGAGCTATGTATGACGTTTTCATGAGCTATATTTCCCATATTCGTGGGTCCTTAAGCTTAGAAGACATCTGGGGAGGGTCGAGAGAGTCGTTCATCTTCCAGTAGCTCATATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGTGTACAAAACTTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAATCAAAGGGGCAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTGGAACAAGACCCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCGCCCCGGCGGCCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCGCCCCCACCTCCTTCTCCCCGGCGCCCGCCGCCGCCGCCCCCGACGCCATCCCCCTCCGCGTCAGCTCCTTCGCGAACAGCGACTCCGGCGCCTCCTCCCCCTCC] [+] EMBL CB680708 [CTCGAGTTTGTTTTTCCCTTTTTGGATGTGACATTTTATCAGGCAGATTATATGGGACCTGTTAGATAATTACAGGCTATAGCTAGCTTTGCATTTACAGATAAAAGCGCGACTAGTGAAAGAAGAAAACTATCGAGCTATGTATGACGTTTTCATGAGCTATATTTCCCATATTCGTGGGTCCTTAAGCTTAGAAGACATCTGGGGAGGGTCGAGAGAGTCGTTCATCTTCCAGTAGCTCATATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGTGTACAAAACTTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAATCAAAGGGGCAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTGGAACAAGACCCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCGCCCCGGCGGCCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCGCCCCCACCTCCTTCTCCCCGGCGCCCGCCGCCGCCGCCCCCGACGCCATCCCCCTCCGCGTCAGCTCCTTCGCGAACAGCGACTCCGGCGCCTCCTCCCCCTCC] consensusID : consensus_2679#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [CCTCCTCCTTTACCACCACCAATGGCGACCATGGCCGTGATCCGCCTCGCGCTCCCGGCGATCCCGGCGGCCGCGTCGTCGTCGGCGTCGTCGGGGTGCAGCGTAAGGACGCGCACGCGGGGGCGTGTGGTGCGGATGCGGGTGAGGTGCCGCGCTGTGGGGAGAGAGGGTGGGGAAGGGGAGGGGGATGGTATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGTGTACAAAACTTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAATCAAAGGGGCAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTGGAACAAGACCCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCGCCCCGGCGGCCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCGGCCCCACCT] [+] EMBL CB680707 [CCTCCTCCTTTACCACCACCAATGGCGACCATGGCCGTGATCCGCCTCGCGCTCCCGGCGATCCCGGCGGCCGCGTCGTCGTCGGCGTCGTCGGGGTGCAGCGTAAGGACGCGCACGCGGGGGCGTGTGGTGCGGATGCGGGTGAGGTGCCGCGCTGTGGGGAGAGAGGGTGGGGAAGGGGAGGGGGATGGTATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGTGTACAAAACTTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAATCAAAGGGGCAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTGGAACAAGACCCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCGCCCCGGCGGCCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCGGCCCCACCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2679#0 CTCGAGTTTGTTTTTCCCTTTTTGGATGTGACATTTTATCAGGCAGATTATATGGGACCT 60 consensus_2679#1 ------------------------------------------CCTCCTCCTTTACCACCA 18 * * * * *** consensus_2679#0 GTTA-GATAATTACAGGCTATAGCTAGCTTTGCATTTACAGATAAAAGCGCGACTAGTGA 119 consensus_2679#1 CCAATGGCGACCAT-GGCCGTGATCCGCCTCGCGCTCCCGGCGATCCCGGCGGCCGCGTC 77 * * * * *** * ** * ** * * * * *** * consensus_2679#0 AAGAAGAAAACTATCGAGCTATGTATGACGTTTTCATGAGCTATATTTCCCATATTCGTG 179 consensus_2679#1 GTCGTCGGCGTCGTCGGG----GTGCAGCGTAAGGACGCGCA------CGCGGGGGCGTG 127 *** * ** *** * * ** * * **** consensus_2679#0 -GGTCCTTAAGCTTAGAAGACATC-TGGGGAGGGTCGAGAGAGTCGTTCATCTTCCAGTA 237 consensus_2679#1 TGGTGCGGATGCGGGTGAGGTGCCGCGCTGTGGGGAGAGAGGGTGGGGAAGGGGA-GGGG 186 *** * * ** ** * * * *** ***** ** * * * consensus_2679#0 GCTCATATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGTGTACAA 297 consensus_2679#1 GATGGTATGGATCAATGTATGGTGGAGGCGATACTGGTGTCTTGCTTGCATCGTGTACAA 246 * * ******************************************************* consensus_2679#0 AACTTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAATCAAAG 357 consensus_2679#1 AACTTGGTCCAAAATACACATAAAGAACAGCAAACAGAGAAACTGTAACAAGAATCAAAG 306 ************************************************************ consensus_2679#0 GGGCAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTGGAACAA 417 consensus_2679#1 GGGCAAATCCAAGAAAAAATGTACTGCCAAGTGACAATAGCAACTTTGCCCGTGGAACAA 366 ************************************************************ consensus_2679#0 GACCCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCGCCCCGG 477 consensus_2679#1 GACCCTCGAGGCCCTCACTGTTGAGAGCCATGGACTTCGCCCGCTGCCCATCCGCCCCGG 426 ************************************************************ consensus_2679#0 CGGCCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCGCCCCCA 537 consensus_2679#1 CGGCCGCCCGCTCGAACTCCGCCGCCGCCACCCGCTTCCTCCCGCCCTCCTCCGGCCCCA 486 ****************************************************** ***** consensus_2679#0 CCTCCTTCTCCCCGGCGCCCGCCGCCGCCGCCCCCGACGCCATCCCCCTCCGCGTCAGCT 597 consensus_2679#1 CCT--------------------------------------------------------- 489 *** consensus_2679#0 CCTTCGCGAACAGCGACTCCGGCGCCTCCTCCCCCTCC 635 consensus_2679#1 -------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||