These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2689#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1273 fasta sequence [TCCGCTCGTGTCGTGTGAAGCGGTGAACTTTAGCCGACTCCTGACTAGCGACTACCCTCCCACTCTCTCAGCTCGCTTCCCTTCCTCGCCTCGCCGGCCAAGAACCACCGCAAGATTCGCCATGGCCAGATCGCCGGAGCCGCCGCGCTACTACGCCGCCGCGGGCTACCACCGCCCCTCGCCCTTCTCCTCCGTGGCGGCGTCCTGCGTCGTGGCGGCGCTGTTCATCCTGCTCGCCGCGGGCGGCGCCGCGGCTGCGCTGTTCCTGCTCTACCGGCCGCAGGCGCCGGCCATCGCCGTGACGGCCGTGCAGCTCCCCTCCTTCGCCTCCCGCAACGGCACCGTCGCCTTCACGTTCCAGCAGCTCGCCTCCGTCCGCAACCCCAACCGCTCCCCGCTCGCGCACTACGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAGGTCGGCTCGATGTACATCCCCGCCGGCCAGATCGACGGGGGGCGCACGCAGTACATGGCCACCAGCTTCACCGTCCCGGCCTTCGCCGTCACCTCCTCCGCCACCGCCGCCGCTTCCTCCTCCCCGGCGCAGACAATCACCGTCCCCGCCTCCGGCCCCTCACCGGCGGCGGTGGGCGCGGTGGCGCTGCAGCAAGAACAGCCGCCGCCGCAGCAGCAGCAGGTGGCGGCGCTGCCGGTGATGGAGGTGGACTCGCTGCTGGTGGTGAAAGGGAAGGTGACCATCCTCCGGGTGTTCACCCACCACGTCGTCGCCGCCAAGGTGTGCCGCATCGGCGTCTCGCCGGCGGACGGCCGCGTGCTCGGATTCCGGTGCTGACCAAGACCAGGCCAAGATCTGACTCTCCTCCATTTGCCCATTTTGGGGTTAATCGGTGGTGTCCCCTGTCAATCTCTTCAGTGAATTCGTGTCAAATTTGTAAGATAAGTTAGTTTGATTTGTAACTTAGAATTCTTCTTCTTTCTGTGATGATTTTCTGAGTGTGTATTTTTCTCTTGAATCTTCTCATCTTTGGTAGATTTCTGCAGCCTTCTTGTTGTAATTTTAATAGATTTTCTAGGTGTTTTCAGAGTCCAGGCCAAAGAAAGATTTGGTTCTTGAGATGTTCAGTTGGACAATTTGTTTTGCTAAGCAACCATAGTGAGGAAATTAAAGCTTATAATTACAATGTATTATCAAAATTATGTTTTGGACTTGTAATCTTATCCATTCTTGCAGAATAATTGTGACATTTTTGCATCGGAATCAGTTCCAGTTAGATGCTTATGA] [+] EMBL AK073471 [TCCGCTCGTGTCGTGTGAAGCGGTGAACTTTAGCCGACTCCTGACTAGCGACTACCCTCCCACTCTCTCAGCTCGCTTCCCTTCCTCGCCTCGCCGGCCAAGAACCACCGCAAGATTCGCCATGGCCAGATCGCCGGAGCCGCCGCGCTACTACGCCGCCGCGGGCTACCACCGCCCCTCGCCCTTCTCCTCCGTGGCGGCGTCCTGCGTCGTGGCGGCGCTGTTCATCCTGCTCGCCGCGGGCGGCGCCGCGGCTGCGCTGTTCCTGCTCTACCGGCCGCAGGCGCCGGCCATCGCCGTGACGGCCGTGCAGCTCCCCTCCTTCGCCTCCCGCAACGGCACCGTCGCCTTCACGTTCCAGCAGCTCGCCTCCGTCCGCAACCCCAACCGCTCCCCGCTCGCGCACTACGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAGGTCGGCTCGATGTACATCCCCGCCGGCCAGATCGACGGGGGGCGCACGCAGTACATGGCCACCAGCTTCACCGTCCCGGCCTTCGCCGTCACCTCCTCCGCCACCGCCGCCGCTTCCTCCTCCCCGGCGCAGACAATCACCGTCCCCGCCTCCGGCCCCTCACCGGCGGCGGTGGGCGCGGTGGCGCTGCAGCAAGAACAGCCGCCGCCGCAGCAGCAGCAGGTGGCGGCGCTGCCGGTGATGGAGGTGGACTCGCTGCTGGTGGTGAAAGGGAAGGTGACCATCCTCCGGGTGTTCACCCACCACGTCGTCGCCGCCAAGGTGTGCCGCATCGGCGTCTCGCCGGCGGACGGCCGCGTGCTCGGATTCCGGTGCTGACCAAGACCAGGCCAAGATCTGACTCTCCTCCATTTGCCCATTTTGGGGTTAATCGGTGGTGTCCCCTGTCAATCTCTTCAGTGAATTCGTGTCAAATTTGTAAGATAAGTTAGTTTGATTTGTAACTTAGAATTCTTCTTCTTTCTGTGATGATTTTCTGAGTGTGTATTTTTCTCTTGAATCTTCTCATCTTTGGTAGATTTCTGCAGCCTTCTTGTTGTAATTTTAATAGATTTTCTAGGTGTTTTCAGAGTCCAGGCCAAAGAAAGATTTGGTTCTTGAGATGTTCAGTTGGACAATTTGTTTTGCTAAGCAACCATAGTGAGGAAATTAAAGCTTATAATTACAATGTATTATCAAAATTATGTTTTGGACTTGTAATCTTATCCATTCTTGCAGAATAATTGTGACATTTTTGCATCGGAATCAGTTCCAGTTAGATGCTTATGA] consensusID : consensus_2689#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1001 fasta sequence [TTCCCACTCACCACGCATGCAGCCGCCGCCAAGAACCCGCGATCCGGCCATCGCCATCGCCGGCGACGGCGCGGCGCGGCGAGGTCCCCCGCCGATGCAGCCGCCCGGGCCGCCGCCGGTAAGGCATGGTCCGCCGCCGGTGCGGCAGCAGCACGGCTACTACTACGAGGAGGAGCAGAGGCCGCTGCACCTGCACGTGAGGACGGCGAGGTCGTCGTCGTCGGCGCTGGCGTCGTGCCTCGTGGCGGCGGCGTTCCTGGCGCTGGCGGTGGGCGGGGCGGGGGCGGCGCTGTTCGTGCTGTTCCGGCCGCGCCCGCCCGACATCGCGGTGGCGGCGGTGCGGCTGCCGGCGTTCGCGTCCGGCCCGAACGGCACGGTGGCGTTCACGTTCGAGCAGACGGCCGCCGTGCGCAACCCCAACCGCGCGCCGCTCGCGCACTTCGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAGCTCGGCTCCGTCTACATCCCCGCCGGCCTCATCGACGGTGGCCGCACCAAGGACATGTCCGCCAGCTTCGCCGTCCCGGCGTTCGCCGCGGCCACCCCGCCGTCGCTGCCTCAGGAGCAGATGGCCGCCGCCGCCGCCGCCTCGGCGCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGTGATGGAGGTCGACTCGCTGCTGGTGGTCAAGGGGAGGGTGACCGTGCTGCGTGTGCTGACGCACCACGTCGAGGCGGCCAAGGTGTGCCGCGTCGGCGTCTCGCCGGTGGACGGCAAGGTGCTCGGCTTCCGGTGCTGAACACCACTATGGATTTGGATTTGGATGAAATCCAAATTAAGCCGAAATTTTGCGGGAAAGAATGTAATTTAATTTAAATTCTGCAGAAACCAAGCATTCCCGTTAAGTTTCTGAGCTCCAAACTGGTGGTGTAATGGTAGATGATGATATACTATGTAATATGTTCCATTCTTAAGACACGGTGAAATACCAGAGTATCAGTAGC] [+] EMBL AK108936 [TTCCCACTCACCACGCATGCAGCCGCCGCCAAGAACCCGCGATCCGGCCATCGCCATCGCCGGCGACGGCGCGGCGCGGCGAGGTCCCCCGCCGATGCAGCCGCCCGGGCCGCCGCCGGTAAGGCATGGTCCGCCGCCGGTGCGGCAGCAGCACGGCTACTACTACGAGGAGGAGCAGAGGCCGCTGCACCTGCACGTGAGGACGGCGAGGTCGTCGTCGTCGGCGCTGGCGTCGTGCCTCGTGGCGGCGGCGTTCCTGGCGCTGGCGGTGGGCGGGGCGGGGGCGGCGCTGTTCGTGCTGTTCCGGCCGCGCCCGCCCGACATCGCGGTGGCGGCGGTGCGGCTGCCGGCGTTCGCGTCCGGCCCGAACGGCACGGTGGCGTTCACGTTCGAGCAGACGGCCGCCGTGCGCAACCCCAACCGCGCGCCGCTCGCGCACTTCGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAGCTCGGCTCCGTCTACATCCCCGCCGGCCTCATCGACGGTGGCCGCACCAAGGACATGTCCGCCAGCTTCGCCGTCCCGGCGTTCGCCGCGGCCACCCCGCCGTCGCTGCCTCAGGAGCAGATGGCCGCCGCCGCCGCCGCCTCGGCGCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGTGATGGAGGTCGACTCGCTGCTGGTGGTCAAGGGGAGGGTGACCGTGCTGCGTGTGCTGACGCACCACGTCGAGGCGGCCAAGGTGTGCCGCGTCGGCGTCTCGCCGGTGGACGGCAAGGTGCTCGGCTTCCGGTGCTGAACACCACTATGGATTTGGATTTGGATGAAATCCAAATTAAGCCGAAATTTTGCGGGAAAGAATGTAATTTAATTTAAATTCTGCAGAAACCAAGCATTCCCGTTAAGTTTCTGAGCTCCAAACTGGTGGTGTAATGGTAGATGATGATATACTATGTAATATGTTCCATTCTTAAGACACGGTGAAATACCAGAGTATCAGTAGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2689#0 --TCCGCTCGTGTCGTGTGAAGCGGTGAACTTTAGCCGACT-CCTGACTAGCGACTACCC 57 consensus_2689#1 TTCCCACTCACCACGCATGCAGCCGCCGCCAAGAACCCGCGATCCGGCCATCGCCATCGC 60 ** *** ** ** *** * * * ** * * * * * ** * * * consensus_2689#0 TCCCACTCTCTCAGCTCGCTTCCCTTCCTCGCCTCGCCGGCCAA--GAACCACCGCAAGA 115 consensus_2689#1 CGGCGACGGCGCGGCGCGGCGAGGTCCCCCGCCGATGCAGCCGCCCGGGCCGCCGCC-GG 119 * * * ** ** * ** **** * *** * ** **** * consensus_2689#0 TTCGCCATGGCCAGATCGCCGGAGCCGCCGC------GCTACTACGCCGCCGCGGGCTA- 168 consensus_2689#1 TAAGGCATGGTCCG-CCGCCGGTGCGGCAGCAGCACGGCTACTACTACGAGGAGGAGCAG 178 * * ***** * * ****** ** ** ** ******** ** * ** * consensus_2689#0 ---CCACCGCCCCTC-----------------GCCCTTCTCCTCCGTGGCGGCGTCCTGC 208 consensus_2689#1 AGGCCGCTGCACCTGCACGTGAGGACGGCGAGGTCGTCGTCGTCGGCGCTGGCGTCGTGC 238 ** * ** *** * * * ** ** * * ****** *** consensus_2689#0 GTCGTGGCGGCGCTGTTCATCCTGCTCGCCGCGGGCGGCGCCGCGGCTGCGCTGTTCCTG 268 consensus_2689#1 CTCGTGGCGGCGGCGTTCCTGGCGCTGGCGGTGGGCGGGGCGGGGGCGGCGCTGTTCGTG 298 *********** **** * *** ** * ****** ** * *** ********* ** consensus_2689#0 CTCTACCGGCCGCAGGCGCCGGCCATCGCCGTGACGGCCGTGCAGCTCCCCTCCTTCGCC 328 consensus_2689#1 CTGTTCCGGCCGCGCCCGCCCGACATCGCGGTGGCGGCGGTGCGGCTGCCGGCGTTCGCG 358 ** * ******** **** * ****** *** **** **** *** ** * ***** consensus_2689#0 TCCCGC---AACGGCACCGTCGCCTTCACGTTCCAGCAGCTCGCCTCCGTCCGCAACCCC 385 consensus_2689#1 TCCGGCCCGAACGGCACGGTGGCGTTCACGTTCGAGCAGACGGCCGCCGTGCGCAACCCC 418 *** ** ******** ** ** ********* ***** *** **** ********* consensus_2689#0 AACCGCTCCCCGCTCGCGCACTACGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAG 445 consensus_2689#1 AACCGCGCGCCGCTCGCGCACTTCGACAGCTCGCTCCGCGTCGCCTACGCCGGCGGCGAG 478 ****** * ************* ************************************* consensus_2689#0 GTCGGCTCGATGTACATCCCCGCCGGCCAGATCGACGGGGGGCGCACGCAGTACATGGCC 505 consensus_2689#1 CTCGGCTCCGTCTACATCCCCGCCGGCCTCATCGACGGTGGCCGCACCAAGGACATGTCC 538 ******* * **************** ******** ** ***** ** ***** ** consensus_2689#0 ACCAGCTTCACCGTCCCGGCCTTCGCCGTCACCTCCTCCGCCACCGCCGCCGCTTCCTCC 565 consensus_2689#1 GCCAGCTTCGCCGTCCCGGCGTTCGCCGCGGCCACC-------CCGCCGTCGCTGCCTCA 591 ******** ********** ******* ** ** ****** **** **** consensus_2689#0 TCCCCGGCGCAGACAATCACCGTCCCCGCCTCCGGCCCCTCACCGGCGGCGGTGGGCGCG 625 consensus_2689#1 -----GGAGCAGATGGCCGCCGCCGCCGCCGCC--------------------------- 619 ** ***** * *** * ***** ** consensus_2689#0 GTGGCGCTGCAGCAAGAACAGCCGCCGCCGCAGCAGCAGCAGGTGGCGGCGCTGCCGGTG 685 consensus_2689#1 ---------------------TCGGCGCAGCAGCAGCAGCCGGCGGCGGCGGCGGCGGTG 658 ** *** *********** ** ******* * ***** consensus_2689#0 ATGGAGGTGGACTCGCTGCTGGTGGTGAAAGGGAAGGTGACCATCCTCCGGGTGTTCACC 745 consensus_2689#1 ATGGAGGTCGACTCGCTGCTGGTGGTCAAGGGGAGGGTGACCGTGCTGCGTGTGCTGACG 718 ******** ***************** ** **** ******* * ** ** *** * ** consensus_2689#0 CACCACGTCGTCGCCGCCAAGGTGTGCCGCATCGGCGTCTCGCCGGCGGACGGCCGCGTG 805 consensus_2689#1 CACCACGTCGAGGCGGCCAAGGTGTGCCGCGTCGGCGTCTCGCCGGTGGACGGCAAGGTG 778 ********** ** *************** *************** ******* *** consensus_2689#0 CTCGGATTCCGGTGCTGACCAAGACCA--GGCCAAGATCTGACTCTCCTCCA--TTTGCC 861 consensus_2689#1 CTCGGCTTCCGGTGCTGAACACCACTATGGATTTGGATTTGGATGAAATCCAAATTAAGC 838 ***** ************ ** ** * * *** ** * **** ** * consensus_2689#0 C---ATTTTGGGGTTAATCGGTGGTGTCCCCTGTCAATCTCTTCAGTGAATTCGTGTCAA 918 consensus_2689#1 CGAAATTTTGCGGGAAA--GAATGTAATTTAATTTAAATTCTGCAGAAA-------CCAA 889 * ****** ** ** * ** * ** *** *** * *** consensus_2689#0 ATTTGTAAGATAAGTTAGTTTGATTTGTAACTTAGAATTCTTCTTCTTTCTGTGATGATT 978 consensus_2689#1 GCATTCCCGTTAAGTT--TCTGAGCTCCAAACTGGTGGTGTAATGGTAG--ATGATGATA 945 * * ****** * *** * ** * * * * * * ******* consensus_2689#0 TTCTGAGTG-TGTATTTTTCTCTTGAATCTTCTCATCTTTGGTAGATTTCTGCAGCCTTC 1037 consensus_2689#1 TACTATGTAATATGTTCCATTCTTAAGACACGGTGAAATACCAGAGTATCAGTAGC---- 1001 * ** ** * * ** **** * * * * ** * *** consensus_2689#0 TTGTTGTAATTTTAATAGATTTTCTAGGTGTTTTCAGAGTCCAGGCCAAAGAAAGATTTG 1097 consensus_2689#1 ------------------------------------------------------------ consensus_2689#0 GTTCTTGAGATGTTCAGTTGGACAATTTGTTTTGCTAAGCAACCATAGTGAGGAAATTAA 1157 consensus_2689#1 ------------------------------------------------------------ consensus_2689#0 AGCTTATAATTACAATGTATTATCAAAATTATGTTTTGGACTTGTAATCTTATCCATTCT 1217 consensus_2689#1 ------------------------------------------------------------ consensus_2689#0 TGCAGAATAATTGTGACATTTTTGCATCGGAATCAGTTCCAGTTAGATGCTTATGA 1273 consensus_2689#1 -------------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||