These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2693#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 2073 fasta sequence [TAAACGCGACGGTGCCCGCGTTGTACGTGGGCGATCTCCACGAAAGCGTGCGGGAGGAGCACCTGCTCGAGGTGTTCGGCAAGATTGGCACCCTCACGTCCGTGCGCGTCTGCCGCGACAATGCCACGAGCAACTCCCTCAGATATGGATACGTGAATTACCTCTCCCAGGCTGACGCTGCAATTGCTTTGGAGAAACTAAATCATAGTCTTATTTTGGATAAGCCGATCAGAGTAATGTGGTCTAACCGAGATCCAGATGCTAGGAGAAGTGGGGTTGGAAATGTGTTTGTTAAGAATCTTAATGATTTAGTTGACAATGTAAGTCTACAAGAATTATTTTGCAAGTTTGGAGATATATTATCTTGTAAAGTCGCTAAAAATGAGGATGGGACAAGTAGAGGCTATGGATTTGTTCAATTTGCGTTGCAAGAATCAGCAGATGCATCAATTCAAAATCTTAACAACTCTCATTTTTGTGGCAGGCAATTGCATGTTGCTACATTTATTAAGAAGAGTGAACGATCTACAAACAATGATGACAAATATACTAACCTATACATGAAGAACCTTGATGATGATATAACAGAGGAACTTATTAAGTTAAAGTTCTCTCAGTATGGTTTAGTAATTAGTGTAAAGATAATGAAAAGAGATGATGGGACATCTAAGGGCTTTGGGTTTGTAAGTTTTCAAAACCCAGAAAGTGCCAAAAGAGCAAAAGAATCCATGAACGGGATGCTACTTGGATCAAAAACCTTGTATGTAGCAAGAGCTCAAAAGAAAGCTGAAAGGAAACAATATTTGCAACGCTTACACGAGGAGAAGAGAAATGAAATAATCACCAAGAGCAATGGGTCGAATGTCTATATAAAAAATATTAATGATGAAGTTGGCGACGATGCTCTCCGTGAACGGTTCAATGAATTTGGAAACATTACATCAGCAAAGATTATGCGTGATGAAAAGGGTATTAGCAAAGGATTTGGATTTGTATGTTACAACACACCTGAGGAAGCAAAATGTGCTGTAAGCAACATGCGTGGTGTAATGTTTTATGGCAAACCATTGTACGTTGCTATTGCTCAAAGGAAAGAGGAAAGACGAGCCAAACTAGAGCAACGTTTTGCTGAGCTTGCAACGATGGTTGGAGCTACAAGTCCTGTCATACCCACAGGATATCCTCAATTTTACTTTGCCCACCCTAGTACACATCTCCCTCAAAGTCCAGGGAGACAAGGATTTATGTATCCACCCATAGGGATTAGTCAAGAATGGAGGCATAACATGTTTCCCTCGTCACATAATATCCAACAAATACATTCACCGATTATGCGAAATACTCCACGGCAATACAGAAACAACAGGGGAAGGATGAATGGAAATATGATGCATTTTCACCACACTGTGAACTATGTTCCACATGCGCAGCCAGCTAAAGAATTCATGTCCATGTCCCGACAGCGATTTAGCCATGCTAAGTATATTCCAAATGACATCATGGCCAATGGATTGGCTATTCATCATGGTGACTCTATTTCATCGATGAATGACGCTTTTAACAACCTGCTAGCTACTGCTCCACCCGAGGAACAGAAGAACATGCTTGGGAATAGACTATATCCGTTGGTTGAGAGACATCATCCTGACCTTGCCAGTAAAATCACTGGAATGTTACTTGAGCTAGGTAATTCTGAAGTGGTCATGCTACTTTACTCATCAAACATGTTGTCTGCCAAAATAGAGGAGTGTGTCAAACTGCTCCAAGAGGTAAAACCCAAACCTGAAGATCAAGAGGCCCTGCACCCTGGTTTCCTCCTAGACTCTGCTGGTGTAAACGCCAACTAAGAATTCAATGCCAATCCAAGCTTTTGACCGTGCTAAATATATTATGTATTTGTGTTTTAGAGATGCTAATTAGATAGATGCTCTTTATTTCATAGTTTATGGAACTATATTATTGGGCTTGTTATAGAACTTACTAATAATGCCTAGGATTTAGGTAGAAATCTCGGGAGTTTTTCTTAAACGGAGCTTGTTACGAATCTTAGATAATAAATTATATATGATGGTG] [+] EMBL AK070850 [TAAACGCGACGGTGCCCGCGTTGTACGTGGGCGATCTCCACGAAAGCGTGCGGGAGGAGCACCTGCTCGAGGTGTTCGGCAAGATTGGCACCCTCACGTCCGTGCGCGTCTGCCGCGACAATGCCACGAGCAACTCCCTCAGATATGGATACGTGAATTACCTCTCCCAGGCTGACGCTGCAATTGCTTTGGAGAAACTAAATCATAGTCTTATTTTGGATAAGCCGATCAGAGTAATGTGGTCTAACCGAGATCCAGATGCTAGGAGAAGTGGGGTTGGAAATGTGTTTGTTAAGAATCTTAATGATTTAGTTGACAATGTAAGTCTACAAGAATTATTTTGCAAGTTTGGAGATATATTATCTTGTAAAGTCGCTAAAAATGAGGATGGGACAAGTAGAGGCTATGGATTTGTTCAATTTGCGTTGCAAGAATCAGCAGATGCATCAATTCAAAATCTTAACAACTCTCATTTTTGTGGCAGGCAATTGCATGTTGCTACATTTATTAAGAAGAGTGAACGATCTACAAACAATGATGACAAATATACTAACCTATACATGAAGAACCTTGATGATGATATAACAGAGGAACTTATTAAGTTAAAGTTCTCTCAGTATGGTTTAGTAATTAGTGTAAAGATAATGAAAAGAGATGATGGGACATCTAAGGGCTTTGGGTTTGTAAGTTTTCAAAACCCAGAAAGTGCCAAAAGAGCAAAAGAATCCATGAACGGGATGCTACTTGGATCAAAAACCTTGTATGTAGCAAGAGCTCAAAAGAAAGCTGAAAGGAAACAATATTTGCAACGCTTACACGAGGAGAAGAGAAATGAAATAATCACCAAGAGCAATGGGTCGAATGTCTATATAAAAAATATTAATGATGAAGTTGGCGACGATGCTCTCCGTGAACGGTTCAATGAATTTGGAAACATTACATCAGCAAAGATTATGCGTGATGAAAAGGGTATTAGCAAAGGATTTGGATTTGTATGTTACAACACACCTGAGGAAGCAAAATGTGCTGTAAGCAACATGCGTGGTGTAATGTTTTATGGCAAACCATTGTACGTTGCTATTGCTCAAAGGAAAGAGGAAAGACGAGCCAAACTAGAGCAACGTTTTGCTGAGCTTGCAACGATGGTTGGAGCTACAAGTCCTGTCATACCCACAGGATATCCTCAATTTTACTTTGCCCACCCTAGTACACATCTCCCTCAAAGTCCAGGGAGACAAGGATTTATGTATCCACCCATAGGGATTAGTCAAGAATGGAGGCATAACATGTTTCCCTCGTCACATAATATCCAACAAATACATTCACCGATTATGCGAAATACTCCACGGCAATACAGAAACAACAGGGGAAGGATGAATGGAAATATGATGCATTTTCACCACACTGTGAACTATGTTCCACATGCGCAGCCAGCTAAAGAATTCATGTCCATGTCCCGACAGCGATTTAGCCATGCTAAGTATATTCCAAATGACATCATGGCCAATGGATTGGCTATTCATCATGGTGACTCTATTTCATCGATGAATGACGCTTTTAACAACCTGCTAGCTACTGCTCCACCCGAGGAACAGAAGAACATGCTTGGGAATAGACTATATCCGTTGGTTGAGAGACATCATCCTGACCTTGCCAGTAAAATCACTGGAATGTTACTTGAGCTAGGTAATTCTGAAGTGGTCATGCTACTTTACTCATCAAACATGTTGTCTGCCAAAATAGAGGAGTGTGTCAAACTGCTCCAAGAGGTAAAACCCAAACCTGAAGATCAAGAGGCCCTGCACCCTGGTTTCCTCCTAGACTCTGCTGGTGTAAACGCCAACTAAGAATTCAATGCCAATCCAAGCTTTTGACCGTGCTAAATATATTATGTATTTGTGTTTTAGAGATGCTAATTAGATAGATGCTCTTTATTTCATAGTTTATGGAACTATATTATTGGGCTTGTTATAGAACTTACTAATAATGCCTAGGATTTAGGTAGAAATCTCGGGAGTTTTTCTTAAACGGAGCTTGTTACGAATCTTAGATAATAAATTATATATGATGGTG] consensusID : consensus_2693#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 663 fasta sequence [GCCGGTCCCAGGCCCAGGCCATCCACCGGCGCTAATACACCTCACCATAGGGACCATGTGCCCAAGCGGACCCCGCTCCGGGTACCCGGTACCCCTAACCCTACCCCCAGGCAAGCGGCCTTTACCACCCCGCTACGTATTGCTCCCCCCGAGCAACAGAAGACCATGCTTGGCAATAGGCCATATCCGTGGCTGAGAGACCTCATCCTGACCTCGCCCGTAAAACCACCGAAATGTCCCTTGACCTAGGTAATTCTGAAGTGGTCGTCCTCCTTTCCTCATCCAACATGTTGTCTCCCAAAATAGAGGAGTGTGTCAAACTGCTCCAAAAGGTAAAACCCCAACCTGAAGATCAAGAGGCCCTGCCCCCTGGTTTCCTCCTAGACTCTGCTGGTGTAAACGCCAACTAAGAATTCAATGCCAATCCAAGCTTTTGACCGTGCTAAATATATTATGTATTTGTGTTTTAGAGATGCTAATTAGATAGATGCTCTTTATTTCATAGTTTATGGAACTATATTATTGGGCTTGTAATAGAACTTACTAATAATGCCTAGGATTTAGGTAGAAATCTCGGGAGTTTTTCTTAAACGGAGCTTGTTACGAATCTTAGATAATAAATTATATATGATGGTGTTCTTGTGTTATAAAAAAAAAAAAAAA] [-] EMBL CA763394 [GCCGGTCCCAGGCCCAGGCCATCCACCGGCGCTAATACACCTCACCATAGGGACCATGTGCCCAAGCGGACCCCGCTCCGGGTACCCGGTACCCCTAACCCTACCCCCAGGCAAGCGGCCTTTACCACCCCGCTACGTATTGCTCCCCCCGAGCAACAGAAGACCATGCTTGGCAATAGGCCATATCCGTGGCTGAGAGACCTCATCCTGACCTCGCCCGTAAAACCACCGAAATGTCCCTTGACCTAGGTAATTCTGAAGTGGTCGTCCTCCTTTCCTCATCCAACATGTTGTCTCCCAAAATAGAGGAGTGTGTCAAACTGCTCCAAAAGGTAAAACCCCAACCTGAAGATCAAGAGGCCCTGCCCCCTGGTTTCCTCCTAGACTCTGCTGGTGTAAACGCCAACTAAGAATTCAATGCCAATCCAAGCTTTTGACCGTGCTAAATATATTATGTATTTGTGTTTTAGAGATGCTAATTAGATAGATGCTCTTTATTTCATAGTTTATGGAACTATATTATTGGGCTTGTAATAGAACTTACTAATAATGCCTAGGATTTAGGTAGAAATCTCGGGAGTTTTTCTTAAACGGAGCTTGTTACGAATCTTAGATAATAAATTATATATGATGGTGTTCTTGTGTTATAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2693#0 TAAACGCGACGGTGCCCGCGTTGTACGTGGGCGATCTCCACGAAAGCGTGCGGGAGGAGC 60 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 ACCTGCTCGAGGTGTTCGGCAAGATTGGCACCCTCACGTCCGTGCGCGTCTGCCGCGACA 120 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 ATGCCACGAGCAACTCCCTCAGATATGGATACGTGAATTACCTCTCCCAGGCTGACGCTG 180 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 CAATTGCTTTGGAGAAACTAAATCATAGTCTTATTTTGGATAAGCCGATCAGAGTAATGT 240 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 GGTCTAACCGAGATCCAGATGCTAGGAGAAGTGGGGTTGGAAATGTGTTTGTTAAGAATC 300 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 TTAATGATTTAGTTGACAATGTAAGTCTACAAGAATTATTTTGCAAGTTTGGAGATATAT 360 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 TATCTTGTAAAGTCGCTAAAAATGAGGATGGGACAAGTAGAGGCTATGGATTTGTTCAAT 420 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 TTGCGTTGCAAGAATCAGCAGATGCATCAATTCAAAATCTTAACAACTCTCATTTTTGTG 480 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 GCAGGCAATTGCATGTTGCTACATTTATTAAGAAGAGTGAACGATCTACAAACAATGATG 540 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 ACAAATATACTAACCTATACATGAAGAACCTTGATGATGATATAACAGAGGAACTTATTA 600 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 AGTTAAAGTTCTCTCAGTATGGTTTAGTAATTAGTGTAAAGATAATGAAAAGAGATGATG 660 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 GGACATCTAAGGGCTTTGGGTTTGTAAGTTTTCAAAACCCAGAAAGTGCCAAAAGAGCAA 720 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 AAGAATCCATGAACGGGATGCTACTTGGATCAAAAACCTTGTATGTAGCAAGAGCTCAAA 780 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 AGAAAGCTGAAAGGAAACAATATTTGCAACGCTTACACGAGGAGAAGAGAAATGAAATAA 840 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 TCACCAAGAGCAATGGGTCGAATGTCTATATAAAAAATATTAATGATGAAGTTGGCGACG 900 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 ATGCTCTCCGTGAACGGTTCAATGAATTTGGAAACATTACATCAGCAAAGATTATGCGTG 960 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 ATGAAAAGGGTATTAGCAAAGGATTTGGATTTGTATGTTACAACACACCTGAGGAAGCAA 1020 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 AATGTGCTGTAAGCAACATGCGTGGTGTAATGTTTTATGGCAAACCATTGTACGTTGCTA 1080 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 TTGCTCAAAGGAAAGAGGAAAGACGAGCCAAACTAGAGCAACGTTTTGCTGAGCTTGCAA 1140 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 CGATGGTTGGAGCTACAAGTCCTGTCATACCCACAGGATATCCTCAATTTTACTTTGCCC 1200 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 ACCCTAGTACACATCTCCCTCAAAGTCCAGGGAGACAAGGATTTATGTATCCACCCATAG 1260 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 GGATTAGTCAAGAATGGAGGCATAACATGTTTCCCTCGTCACATAATATCCAACAAATAC 1320 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 ATTCACCGATTATGCGAAATACTCCACGGCAATACAGAAACAACAGGGGAAGGATGAATG 1380 consensus_2693#1 ------------------------------------------------------------ consensus_2693#0 GAAATATGATGCATTTTCACCACACTGTGAACTATGTTCCACATGCGCAGCCAGCTAAAG 1440 consensus_2693#1 -------------------------------------------------GCCGGTCCCAG 11 *** * ** consensus_2693#0 AATTCATGTCCATGTCCCGACAGCGATTTAGCCATGCTAAGTATATTCCAAATGACATCA 1500 consensus_2693#1 G--CCCAGGCCATCCACCGGCGCTAATACA-CCTCACCA--TAGGGACCATGTGCCCAAG 66 * * **** *** * ** * ** * * ** *** ** * consensus_2693#0 TGGCCAATGGATTGGCTATTCATCATGG-TGACTCTATTTCATCGATGAATGACGCTTTT 1559 consensus_2693#1 CGGACCCCGCTCCGGGTACCCGGTACCCCTAACCCTACCCC-CAGGCAAGCG--GCCTTT 123 ** * * ** ** * * * ** *** * * * * ** *** consensus_2693#0 AACAACCTGCTAGCTACTGCTCCACCCGAGGAACAGAAGAACATGCTTGGGAATAGACTA 1619 consensus_2693#1 ACCACCCCGCTACGTATTGCTCCCCCCGAGCAACAGAAGACCATGCTTGGCAATAGGCCA 183 * ** ** **** ** ****** ****** ********* ********* ***** * * consensus_2693#0 TATCCGTTGGTTGAGAGACATCATCCTGACCTTGCCAGTAAAATCACTGGAATGTTACTT 1679 consensus_2693#1 TATCCGT-GGCTGAGAGACCTCATCCTGACCTCGCCCGTAAAACCACCGAAATGTCCCTT 242 ******* ** ******** ************ *** ****** *** * ***** *** consensus_2693#0 GAGCTAGGTAATTCTGAAGTGGTCATGCTACTTTACTCATCAAACATGTTGTCTGCCAAA 1739 consensus_2693#1 GACCTAGGTAATTCTGAAGTGGTCGTCCTCCTTTCCTCATCCAACATGTTGTCTCCCAAA 302 ** ********************* * ** **** ****** ************ ***** consensus_2693#0 ATAGAGGAGTGTGTCAAACTGCTCCAAGAGGTAAAACCCAAACCTGAAGATCAAGAGGCC 1799 consensus_2693#1 ATAGAGGAGTGTGTCAAACTGCTCCAAAAGGTAAAACCCCAACCTGAAGATCAAGAGGCC 362 *************************** *********** ******************** consensus_2693#0 CTGCACCCTGGTTTCCTCCTAGACTCTGCTGGTGTAAACGCCAACTAAGAATTCAATGCC 1859 consensus_2693#1 CTGCCCCCTGGTTTCCTCCTAGACTCTGCTGGTGTAAACGCCAACTAAGAATTCAATGCC 422 **** ******************************************************* consensus_2693#0 AATCCAAGCTTTTGACCGTGCTAAATATATTATGTATTTGTGTTTTAGAGATGCTAATTA 1919 consensus_2693#1 AATCCAAGCTTTTGACCGTGCTAAATATATTATGTATTTGTGTTTTAGAGATGCTAATTA 482 ************************************************************ consensus_2693#0 GATAGATGCTCTTTATTTCATAGTTTATGGAACTATATTATTGGGCTTGTTATAGAACTT 1979 consensus_2693#1 GATAGATGCTCTTTATTTCATAGTTTATGGAACTATATTATTGGGCTTGTAATAGAACTT 542 ************************************************** ********* consensus_2693#0 ACTAATAATGCCTAGGATTTAGGTAGAAATCTCGGGAGTTTTTCTTAAACGGAGCTTGTT 2039 consensus_2693#1 ACTAATAATGCCTAGGATTTAGGTAGAAATCTCGGGAGTTTTTCTTAAACGGAGCTTGTT 602 ************************************************************ consensus_2693#0 ACGAATCTTAGATAATAAATTATATATGATGGTG-------------------------- 2073 consensus_2693#1 ACGAATCTTAGATAATAAATTATATATGATGGTGTTCTTGTGTTATAAAAAAAAAAAAAA 662 ********************************** consensus_2693#0 - consensus_2693#1 A 663 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||