These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2697#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [TTTTTTTTTTTCACAGAATCCCAATATCAAATATTAACATAGGATGTCGTACATATATAAACTCATTTTCCACAGTAAAGGAAAAGAAAAGGAGGTACATTTCTATTGCAAATTGTGTTGCTAAAAATAGGAACGGCAGCTGTGCACCAGATCAGAACTAAAAAAAACAAATCTAGAGACCGGTGATGCATTTGCCATTGCAAGTGCGGTATCAGCCAAAGGATGTCCAGTCCAGGGTACTACGTGTGAACCTGAGGGAGAAAGGCCCCACCATAGTTGGACGCTCACATCGCAGGACCCAAGCAAACAGTGGTTAAAAGGGCATGGCCCCTGCCCTTGTGCGGCGCACGGTGGAAGAAGCACCAGTGCACCATGCAATGTCTCACGGTGGTGGCAATGGAGATCTCTTTTGCAAATATGAGGAAACAACTGGAAAGTACAAGAGCACCTCAACAAACCGTCGCTCATAGGAGCTATTTTACCTGGTGCAGGTTAGCAGGTACAGTTGCACGAAGATAAAAATGGCTGCAGATGCAGTTCAGGTGTGTTTGGTCATACATCTGTCCACCATGATTCCAGGGGCACTTGCAGATGAAGCTTGCCATGTATGTTGACAGATGCACCCCCCTTGT] [+] EMBL CA763398 [TTTTTTTTTTTCACAGAATCCCAATATCAAATATTAACATAGGATGTCGTACATATATAAACTCATTTTCCACAGTAAAGGAAAAGAAAAGGAGGTACATTTCTATTGCAAATTGTGTTGCTAAAAATAGGAACGGCAGCTGTGCACCAGATCAGAACTAAAAAAAACAAATCTAGAGACCGGTGATGCATTTGCCATTGCAAGTGCGGTATCAGCCAAAGGATGTCCAGTCCAGGGTACTACGTGTGAACCTGAGGGAGAAAGGCCCCACCATAGTTGGACGCTCACATCGCAGGACCCAAGCAAACAGTGGTTAAAAGGGCATGGCCCCTGCCCTTGTGCGGCGCACGGTGGAAGAAGCACCAGTGCACCATGCAATGTCTCACGGTGGTGGCAATGGAGATCTCTTTTGCAAATATGAGGAAACAACTGGAAAGTACAAGAGCACCTCAACAAACCGTCGCTCATAGGAGCTATTTTACCTGGTGCAGGTTAGCAGGTACAGTTGCACGAAGATAAAAATGGCTGCAGATGCAGTTCAGGTGTGTTTGGTCATACATCTGTCCACCATGATTCCAGGGGCACTTGCAGATGAAGCTTGCCATGTATGTTGACAGATGCACCCCCCTTGT] consensusID : consensus_2697#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 117 fasta sequence [CATGGACTGAGGAGTAGAAACCTCCTTTTCTTTTCCTTTACTGTGGAAAATGAGTTAATATATGTACGACATCCTATGTTAATATTTGATATTGGGATTCTGTGAGATCCTGCACAT] [+] EMBL CF308149 [CATGGACTGAGGAGTAGAAACCTCCTTTTCTTTTCCTTTACTGTGGAAAATGAGTTAATATATGTACGACATCCTATGTTAATATTTGATATTGGGATTCTGTGAGATCCTGCACAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2697#0 TTTTTTTTTTTCACAGAATCCCAATATCAAATATTAACATAGGATGTCGTACATATATAA 60 consensus_2697#1 ------------------------------------------------------------ consensus_2697#0 ACTCATTTTCCACAGTAAAGGAAAAGAAAAGGAGGTACATTTCTATTGCAAATTGTGTTG 120 consensus_2697#1 ------------------------------------------------------------ consensus_2697#0 CTAAAAATAGGAACGGCAGCTGTGCACCAGATCAGAACTAAAAAAAACAAATCTAGAGAC 180 consensus_2697#1 ------------------------------------------------------------ consensus_2697#0 CGGTGATGCATTTGCCATTGCAAGTGCGGTATCAGCCAAAGGATGTCCAGTCCAGGGTAC 240 consensus_2697#1 ------------------------------------------------------------ consensus_2697#0 TACGTGTGAACCTGAGGGAGAAAGGCCCCACCATAGTTGGACGCTCACATCGCAGGACCC 300 consensus_2697#1 ------------------------------------------------------------ consensus_2697#0 AAGCAAACAGTGGTTAAAAGGGCATGGCCCCTGCCCTTGTGCGGCGCACGGTGGAAGAAG 360 consensus_2697#1 --------CATGGACTGAGGAGTAGAAACCTCCTTTTCTTTTCCTTTACTGTGGAAAATG 52 *** * * * * ** * * ** ****** * * consensus_2697#0 CACCAGTGCACCATGCAATGTCTCACGGTGGTGGC-AATGGAGATCTCTTTTGCAAATAT 419 consensus_2697#1 AGTTAATATAT-GTACGACATCCTATGTTAATATTTGATATTGGGATTCTGTGAGATCCT 111 * * * * * * ** * * * * ** * * * ** * * consensus_2697#0 GAGGAAACAACTGGAAAGTACAAGAGCACCTCAACAAACCGTCGCTCATAGGAGCTATTT 479 consensus_2697#1 GCACAT------------------------------------------------------ 117 * * consensus_2697#0 TACCTGGTGCAGGTTAGCAGGTACAGTTGCACGAAGATAAAAATGGCTGCAGATGCAGTT 539 consensus_2697#1 ------------------------------------------------------------ consensus_2697#0 CAGGTGTGTTTGGTCATACATCTGTCCACCATGATTCCAGGGGCACTTGCAGATGAAGCT 599 consensus_2697#1 ------------------------------------------------------------ consensus_2697#0 TGCCATGTATGTTGACAGATGCACCCCCCTTGT 632 consensus_2697#1 --------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||