These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2698#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 464 fasta sequence [GGGGCCAAGCAAGCGAAGCAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGGAAGGGGACGGCGACGCCGCTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTGGCGCGGGTTGCCGAGGCCGTCGCCGACCGCCGCGCCGAGCTCGGCCGACCTCCAGGGCTTCTCCGCCGACGACGCCGCCCTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCACGACATCATGGTTCCCTTCGGTGGCGCGGCATTTTTCCCCGGGCGTTTAATCCACACGAATGAACTACTGGCGCTTCTAGGGGAGGGGTACTATGTGGAGAGATCCGCCGAGCATACCACCGAGATATTGCACAGGAGGGGGATGGAGCTGGAAGCTCAAGTGGAAGCGATGAAGGCAACTATCTCTGACCTTGAAGCTGAGGCGAAGTTCTTCCAATCAACTG] [+] EMBL CB681551 [GGGGCCAAGCAAGCGAAGCAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGGAAGGGGACGGCGACGCCGCTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTGGCGCGGGTTGCCGAGGCCGTCGCCGACCGCCGCGCCGAGCTCGGCCGACCTCCAGGGCTTCTCCGCCGACGACGCCGCCCTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCACGACATCATGGTTCCCTTCGGTGGCGCGGCATTTTTCCCCGGGCGTTTAATCCACACGAATGAACTACTGGCGCTTCTAGGGGAGGGGTACTATGTGGAGAGATCCGCCGAGCATACCACCGAGATATTGCACAGGAGGGGGATGGAGCTGGAAGCTCAAGTGGAAGCGATGAAGGCAACTATCTCTGACCTTGAAGCTGAGGCGAAGTTCTTCCAATCAACTG] consensusID : consensus_2698#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 435 fasta sequence [CAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGGAAGGGGACGGCGACGCCGCTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTGGCGCGGGTTGCCGAGGCCGTCGCCGACCGCCGCGCCGAGCTCGGCCGCCTCCAGGGCTTCTCCGCCGACAACGCCGCCCTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCACGACATCATGGTTCCCTTCGGTGGCGCGGCATTTTTCCCCGGCCGTTTAATCCACACGAATGAACTACTGGGGAGGGGTACTATGTGGAGAGATCCGCCAAGCAGACCACCGAGATATTGCACAGGAGGGGGATGGAGCTGGAAGCTCAAGTGGAAGCGATGAAGGCAACTATCTCTGACCTTGAAGCTGAGGCGAAGTTCTTCGAATCAACTG] [+] EMBL AK068358 [CAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGGAAGGGGACGGCGACGCCGCTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTGGCGCGGGTTGCCGAGGCCGTCGCCGACCGCCGCGCCGAGCTCGGCCGCCTCCAGGGCTTCTCCGCCGACAACGCCGCCCTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCACGACATCATGGTTCCCTTCGGTGGCGCGGCATTTTTCCCCGGCCGTTTAATCCACACGAATGAACTACTGGGGAGGGGTACTATGTGGAGAGATCCGCCAAGCAGACCACCGAGATATTGCACAGGAGGGGGATGGAGCTGGAAGCTCAAGTGGAAGCGATGAAGGCAACTATCTCTGACCTTGAAGCTGAGGCGAAGTTCTTCGAATCAACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2698#0 GGGGCCAAGCAAGCGAAGCAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGG 60 consensus_2698#1 ------------------CAAAGCAGCGGCGACACGGCGGCGATGGCTGCGGCGGCGAGG 42 ****************************************** consensus_2698#0 AAGGGGACGGCGACGCCGCTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTG 120 consensus_2698#1 AAGGGGACGGCGACGCCGCTGGGCGCGGTGTTCTCGCCGGAGGAGACGAGGAGGGCCGTG 102 ************************************************************ consensus_2698#0 GCGCGGGTTGCCGAGGCCGTCGCCGACCGCCGCGCCGAGCTCGGCCGACCTCCAGGGCTT 180 consensus_2698#1 GCGCGGGTTGCCGAGGCCGTCGCCGACCGCCGCGCCGAGCTCGGCCG-CCTCCAGGGCTT 161 *********************************************** ************ consensus_2698#0 CTCCGCCGACGACGCCGCCCTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCA 240 consensus_2698#1 CTCCGCCGACAACGCCGCCCTCGTCTCCCTCGTCCAGAGGCTCCCCGACGAGGTCTCCCA 221 ********** ************************************************* consensus_2698#0 CGACATCATGGTTCCCTTCGGTGGCGCGGCATTTTTCCCCGGGCGTTTAATCCACACGAA 300 consensus_2698#1 CGACATCATGGTTCCCTTCGGTGGCGCGGCATTTTTCCCCGGCCGTTTAATCCACACGAA 281 ****************************************** ***************** consensus_2698#0 TGAACTACTGGCGCTTCTAGGGGAGGGGTACTATGTGGAGAGATCCGCCGAGCATACCAC 360 consensus_2698#1 TGAACTACT----------GGGGAGGGGTACTATGTGGAGAGATCCGCCAAGCAGACCAC 331 ********* ****************************** **** ***** consensus_2698#0 CGAGATATTGCACAGGAGGGGGATGGAGCTGGAAGCTCAAGTGGAAGCGATGAAGGCAAC 420 consensus_2698#1 CGAGATATTGCACAGGAGGGGGATGGAGCTGGAAGCTCAAGTGGAAGCGATGAAGGCAAC 391 ************************************************************ consensus_2698#0 TATCTCTGACCTTGAAGCTGAGGCGAAGTTCTTCCAATCAACTG 464 consensus_2698#1 TATCTCTGACCTTGAAGCTGAGGCGAAGTTCTTCGAATCAACTG 435 ********************************** ********* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||