These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2723#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1818 fasta sequence [CACCACCTAAACCCACAAAAAACTAAACCAGAAAACCGCTTAACCGCAAGCGCCGAGGCGGAGAGCGGAGGCAGACGCAGACGCAGCAGCCGAGCACGCGGCGACGCCCACGCCCACGCACACAGCTCGGCTTCCCGGCGGAAACCCTAGCGGGCGGGCGGGCCCCAATGGCGGAGGAGGGCGACAAGGCCACGGCGGCGGCGGAGGCGGGGGGAGGAGCAGCCGCTACCGCCGCCGCTGGTGGTGGTGGTGGGGGTGGGGGTGGTGGAGCGGAGGAGGAGAGCGTGAAGCTGTTCGTGGGGCAGGTGCCGAAGCACATGACGGAGGCGGAGCTGCTCGCCATGTTCCAGGAGGTGGCCATCGTCGACGAGGTCACCGTCATCAAGGACAAGGCCACCAAGGCCTCGCGAGGGTGCTGCTTCCTCATATGCCCCTCGAGGGAAGAGGCTGACAAGGCAGTGAACGCTTACCACAATAAGCACACACTTCCTGGGGCATCAAGTCCTTTACAAGTAAAATATGCTGATGGAGAGTTGGAGAGACTAGAACACAAGCTTTTTATTGGAATGCTTCCAAAAAATGTAACGGACACCGAATTGACTGATTTATTTTCCAAATATGGAAATATCAAGGATTTACAGATTTTAAGGGGTTCACAACAAACAAGTAAAGCTGGCTGTGCATTCCTTAAATATGAAACAAAGGAGCAAGCAGTGGCAGCTATTGAGGCTCTAAATGGGAAGCACAAAATAGAGGGCTCTAGTGTGCCGTTGGTTGTCAAATGGGCCGATACAGAAAAGGAAAGGCAGGCCCGAAAAGCACAAAAGGCTCAATTGCAATCATCTAATATGCCTAGCGCGAGTCCTATGCAACAATCTTCATTATTTGGGGCTTTACAGATGGGATATATGCCTCAATATAATGGATTTGGCTATCAGCCACCAGGGACATACGGACTTATGCAGTACCCCTTATCTCCTATGCAGAATCAAGCCACATTCCCAAACATGGTTCAACCTGTTAATCAAGGAAACTCTATACGAGGAGTCAACCCTGAACTGTCCCCTAATTCAGTTCCTAGATCATTCAACGCAATGCAGTTAAGCAGCCCTTATCCACCTGTACCTGGTGTGCAGTATGCTGGATCCTACCCTGGTGGTCTCATGAATAATCGTCCTTTCGGGAATTCGTTCAGTTCGATTAAAGTTCCAATTGTAAATGCAAATTCTCCTGCATCTTCTAGTCCCAGTAGCAATCCTGGTGGCCAAATAGAAGGTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATTATGGGGACCAAGACCTTTCCAATGCATTCCAGAGGTTCGGTAGAGTACTAAGTGCTAAGGTTTTTGTAGACAAAGCAACGGGTTCCAGCAAATGCTTTGGTTTTGTAAGCTACGATTCTCCTGCTTCCGCACAGGCAGCCATTGGTGTGATGAACGGTTTCCAATTAGGCAGTAAAAAACTCAAAGTACAACTCAAGAGAGACAACTCCAAGCACAGTAAACCCTTTTGACGAAAACTATGATGACCACGCGATCAGGTTCCTGGTACATATTTGTCAGATAATTGATCGTTGAATTGTTTGCTCTGGCCGCAGCATTGGGAGCTTCGTGTATCTTCTTTGTTCAATTCACATTCTTGAACACTGTTACGTCGTGTAATTTACTGCAGCCTAGTGGTAGAATTTGTTTCATCAGACCCTTGTACATCAGAAGTCAGATTCATTCAATTGTGGACATTTTCTCCTGACAGTGATTCCGGTTTCTCATTGACACGATTCC] [+] EMBL AK099501 [CACCACCTAAACCCACAAAAAACTAAACCAGAAAACCGCTTAACCGCAAGCGCCGAGGCGGAGAGCGGAGGCAGACGCAGACGCAGCAGCCGAGCACGCGGCGACGCCCACGCCCACGCACACAGCTCGGCTTCCCGGCGGAAACCCTAGCGGGCGGGCGGGCCCCAATGGCGGAGGAGGGCGACAAGGCCACGGCGGCGGCGGAGGCGGGGGGAGGAGCAGCCGCTACCGCCGCCGCTGGTGGTGGTGGTGGGGGTGGGGGTGGTGGAGCGGAGGAGGAGAGCGTGAAGCTGTTCGTGGGGCAGGTGCCGAAGCACATGACGGAGGCGGAGCTGCTCGCCATGTTCCAGGAGGTGGCCATCGTCGACGAGGTCACCGTCATCAAGGACAAGGCCACCAAGGCCTCGCGAGGGTGCTGCTTCCTCATATGCCCCTCGAGGGAAGAGGCTGACAAGGCAGTGAACGCTTACCACAATAAGCACACACTTCCTGGGGCATCAAGTCCTTTACAAGTAAAATATGCTGATGGAGAGTTGGAGAGACTAGAACACAAGCTTTTTATTGGAATGCTTCCAAAAAATGTAACGGACACCGAATTGACTGATTTATTTTCCAAATATGGAAATATCAAGGATTTACAGATTTTAAGGGGTTCACAACAAACAAGTAAAGCTGGCTGTGCATTCCTTAAATATGAAACAAAGGAGCAAGCAGTGGCAGCTATTGAGGCTCTAAATGGGAAGCACAAAATAGAGGGCTCTAGTGTGCCGTTGGTTGTCAAATGGGCCGATACAGAAAAGGAAAGGCAGGCCCGAAAAGCACAAAAGGCTCAATTGCAATCATCTAATATGCCTAGCGCGAGTCCTATGCAACAATCTTCATTATTTGGGGCTTTACAGATGGGATATATGCCTCAATATAATGGATTTGGCTATCAGCCACCAGGGACATACGGACTTATGCAGTACCCCTTATCTCCTATGCAGAATCAAGCCACATTCCCAAACATGGTTCAACCTGTTAATCAAGGAAACTCTATACGAGGAGTCAACCCTGAACTGTCCCCTAATTCAGTTCCTAGATCATTCAACGCAATGCAGTTAAGCAGCCCTTATCCACCTGTACCTGGTGTGCAGTATGCTGGATCCTACCCTGGTGGTCTCATGAATAATCGTCCTTTCGGGAATTCGTTCAGTTCGATTAAAGTTCCAATTGTAAATGCAAATTCTCCTGCATCTTCTAGTCCCAGTAGCAATCCTGGTGGCCAAATAGAAGGTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATTATGGGGACCAAGACCTTTCCAATGCATTCCAGAGGTTCGGTAGAGTACTAAGTGCTAAGGTTTTTGTAGACAAAGCAACGGGTTCCAGCAAATGCTTTGGTTTTGTAAGCTACGATTCTCCTGCTTCCGCACAGGCAGCCATTGGTGTGATGAACGGTTTCCAATTAGGCAGTAAAAAACTCAAAGTACAACTCAAGAGAGACAACTCCAAGCACAGTAAACCCTTTTGACGAAAACTATGATGACCACGCGATCAGGTTCCTGGTACATATTTGTCAGATAATTGATCGTTGAATTGTTTGCTCTGGCCGCAGCATTGGGAGCTTCGTGTATCTTCTTTGTTCAATTCACATTCTTGAACACTGTTACGTCGTGTAATTTACTGCAGCCTAGTGGTAGAATTTGTTTCATCAGACCCTTGTACATCAGAAGTCAGATTCATTCAATTGTGGACATTTTCTCCTGACAGTGATTCCGGTTTCTCATTGACACGATTCC] consensusID : consensus_2723#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [CACACTCTCTCTCTCACACTACTACCCTCATGAGCACGGAGGCGACGATGGCGGCCGGCCGTGCGGGGTGGCACGTCGGGCGTTGAGGAAGCTGCTGTCATCGCCGCCGCCGTTGCTGCTGGTGTAGGTGTGGGCGGAGTAGAGAAGATCGTGAAGCTATTTATGGGGTAGGTGCCTGAGCACATGATGAAGGTGAAGCTGCTCACCATGTTCCAGGATGTGGCCATCGTCGACAAGGTCACCGTCATCAAGGACAAGGCCTCTTGTGGTGTGGATCTGTACACCCAGATTTAGGCTTGTGACTCTCGAGCTCTTACATTGGCTTGTTTCTAAGGTTTAGTTTGGGGTTTTCTACATGTTATATGGGTGTTTCTACAGTTATGATGACTTTTTATTGAGCTCTT] [+] EMBL AK107752 [CACACTCTCTCTCTCACACTACTACCCTCATGAGCACGGAGGCGACGATGGCGGCCGGCCGTGCGGGGTGGCACGTCGGGCGTTGAGGAAGCTGCTGTCATCGCCGCCGCCGTTGCTGCTGGTGTAGGTGTGGGCGGAGTAGAGAAGATCGTGAAGCTATTTATGGGGTAGGTGCCTGAGCACATGATGAAGGTGAAGCTGCTCACCATGTTCCAGGATGTGGCCATCGTCGACAAGGTCACCGTCATCAAGGACAAGGCCTCTTGTGGTGTGGATCTGTACACCCAGATTTAGGCTTGTGACTCTCGAGCTCTTACATTGGCTTGTTTCTAAGGTTTAGTTTGGGGTTTTCTACATGTTATATGGGTGTTTCTACAGTTATGATGACTTTTTATTGAGCTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2723#0 CACCACCTAAACCCACAAAAAACTAAACCAGAAAACCGCTTAACCGCAAGCGCCGAGGCG 60 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 GAGAGCGGAGGCAGACGCAGACGCAGCAGCCGAGCACGCGGCGACGCCCACGCCCACGCA 120 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 CACAGCTCGGCTTCCCGGCGGAAACCCTAGCGGGCGGGCGGGCCCCAATGGCGGAGGAGG 180 consensus_2723#1 CACACTCTCTCTCTCACACTACTACCCTCATGAGCACGGAGGCGACGATGGCGGCCGGCC 60 **** ** * * ***** * ** * *** * ******* * consensus_2723#0 GCGACAAGGCCACGGCGGCGGCGGAGGCGGGGGGAGGAGCAGCCGCTACCGCCGCCGCTG 240 consensus_2723#1 GTG-------CGGGGTGGCA-CGTCGGGCGTTGAGGAAGCTGCTGTCATCGCCGCCGCCG 112 * * * ** *** ** ** * * * *** ** * * ********* * consensus_2723#0 GTGGTGGTGGTGGGGGTGGGGGTGGTGGAGCGGAGGAGGAGAGCGTGAAGCTGTTCGTGG 300 consensus_2723#1 TTGCTGCTGGTGTAGGTGTGGGCGGAGTAG------AGAAGATCGTGAAGCTATTTATGG 166 ** ** ***** **** *** ** * ** ** *** ********* ** *** consensus_2723#0 GGCAGGTGCCGAAGCACATGACGGAGGCGGAGCTGCTCGCCATGTTCCAGGAGGTGGCCA 360 consensus_2723#1 GGTAGGTGCCTGAGCACATGATGAAGGTGAAGCTGCTCACCATGTTCCAGGATGTGGCCA 226 ** ******* ********* * *** * ******** ************* ******* consensus_2723#0 TCGTCGACGAGGTCACCGTCATCAAGGACAAGGCCACCAAGGCCTCGCGAGGGTGCTGCT 420 consensus_2723#1 TCGTCGACAAGGTCACCGTCATCAAGGACAAGGCCTCTTG----TGGTGTGGAT-CTGTA 281 ******** ************************** * * * * ** * *** consensus_2723#0 TCCTCATATGCCCCTCGAGGGAAGAGGCTGACAAGGCAGTGAACGCTTACCACAATAAGC 480 consensus_2723#1 CACCCAGATTT-------------AGGCTTGTGACTCT-CGAGCTCTTACATTGGCTTGT 327 * ** ** ***** * * ** * ***** * consensus_2723#0 ACACACTTCCTGGGGCATCAAGTCCTTTACAAGTAAAATATGCTGATGGAGAGTTGGAGA 540 consensus_2723#1 TTCTAAGGTTTA--GTTTGGGGTTTTCTACATGTTATATGGGTGTTTCTACAGTTATGAT 385 * * * * ** * **** ** * ** * * * **** consensus_2723#0 GACTAGAACACAAGCTTTTTATTGGAATGCTTCCAAAAAATGTAACGGACACCGAATTGA 600 consensus_2723#1 GACTTTTTATTGAGCTCTT----------------------------------------- 404 **** **** ** consensus_2723#0 CTGATTTATTTTCCAAATATGGAAATATCAAGGATTTACAGATTTTAAGGGGTTCACAAC 660 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 AAACAAGTAAAGCTGGCTGTGCATTCCTTAAATATGAAACAAAGGAGCAAGCAGTGGCAG 720 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 CTATTGAGGCTCTAAATGGGAAGCACAAAATAGAGGGCTCTAGTGTGCCGTTGGTTGTCA 780 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 AATGGGCCGATACAGAAAAGGAAAGGCAGGCCCGAAAAGCACAAAAGGCTCAATTGCAAT 840 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 CATCTAATATGCCTAGCGCGAGTCCTATGCAACAATCTTCATTATTTGGGGCTTTACAGA 900 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 TGGGATATATGCCTCAATATAATGGATTTGGCTATCAGCCACCAGGGACATACGGACTTA 960 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 TGCAGTACCCCTTATCTCCTATGCAGAATCAAGCCACATTCCCAAACATGGTTCAACCTG 1020 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 TTAATCAAGGAAACTCTATACGAGGAGTCAACCCTGAACTGTCCCCTAATTCAGTTCCTA 1080 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 GATCATTCAACGCAATGCAGTTAAGCAGCCCTTATCCACCTGTACCTGGTGTGCAGTATG 1140 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 CTGGATCCTACCCTGGTGGTCTCATGAATAATCGTCCTTTCGGGAATTCGTTCAGTTCGA 1200 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 TTAAAGTTCCAATTGTAAATGCAAATTCTCCTGCATCTTCTAGTCCCAGTAGCAATCCTG 1260 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 GTGGCCAAATAGAAGGTCCTCCAGGAGCTAATCTATTTATCTATCATATCCCACAAGATT 1320 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 ATGGGGACCAAGACCTTTCCAATGCATTCCAGAGGTTCGGTAGAGTACTAAGTGCTAAGG 1380 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 TTTTTGTAGACAAAGCAACGGGTTCCAGCAAATGCTTTGGTTTTGTAAGCTACGATTCTC 1440 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 CTGCTTCCGCACAGGCAGCCATTGGTGTGATGAACGGTTTCCAATTAGGCAGTAAAAAAC 1500 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 TCAAAGTACAACTCAAGAGAGACAACTCCAAGCACAGTAAACCCTTTTGACGAAAACTAT 1560 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 GATGACCACGCGATCAGGTTCCTGGTACATATTTGTCAGATAATTGATCGTTGAATTGTT 1620 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 TGCTCTGGCCGCAGCATTGGGAGCTTCGTGTATCTTCTTTGTTCAATTCACATTCTTGAA 1680 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 CACTGTTACGTCGTGTAATTTACTGCAGCCTAGTGGTAGAATTTGTTTCATCAGACCCTT 1740 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 GTACATCAGAAGTCAGATTCATTCAATTGTGGACATTTTCTCCTGACAGTGATTCCGGTT 1800 consensus_2723#1 ------------------------------------------------------------ consensus_2723#0 TCTCATTGACACGATTCC 1818 consensus_2723#1 ------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||