These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2728#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1706 fasta sequence [TTCTTGAACTGCCCTCAAGAAAGCAGGGGAAAGGAAAGGACTCCCCTTTCCACTGGGAGAGAGAAAAGGAGAGAGAGACCTGGAGAAGGGGGGAAAGGGAGGAGGAAGAAGAGGGGAGAGAGGCCATGGTGCGGAAGAATGGGTGGCAGCTCCCAGCACACACCTTCCAGATTATTGCAATTACCGTTTTCTTCCTTCTGGTGGTTGCCTTTTATGCCTTCTTTGCACCATTCCTGGGAAAGCAAGTCCTTGAATATATCGCATTCGGCATCTATACTCCTGTGGCATTTGTTGTCTTCATCCTTTATATCCGGTGCACTAGCATAAATCCTGCAGATCCCGGGATCATGTCAAAGTTTCAAAATGGCTTCCGTAATGCACCAACAAGCGGCACCGGCTTACAGGACACAAATTTGCCAGGAAGGGGTGATGTTGCTACTGGAACGAATTCCCCAACATCTACTTTTAAGAGCTCTCTAGATGGACGTTCTAACCATGCTGGTTTAGCTGCTGGAGATGGAAATAATTTGAGCTCACAACCACCAAGGAGTTCAAGTTGCTCCTTAGTCGGAGGACTTATTTGTGCTCTGTTTGTTGAGGAGGATTGCAGGACGCTTGTTGATTCAGAGCATCAAGCTGATGGAGAAGATGCCTTGTTTTGCACATTATGTAATGCTGAGGTTCGCAAATTCAGTAAACATTGCAGAAGTTGTGATAAATGTGTGGATGGTTTTGATCATCACTGTCGGTGGCTAAATAATTGCGTTGGGCGCAAGAACTATTTCACATTTCTTGCTCTGATGATTACCAGCCTCCTCTGGCTTGCCATTGAAATCGGGGTCGGCATTGCTGTTCTTGTTGTATGCTTCGTCAACAAGAATTCAGAAAGTATTATTCAAGACAAGCTTGCAAATGGTTTAACTCGTCCACCCTTTGCAACTATAGTAGCCATATTTACTCTTCTTTCTATAATCGCTTGTATACCCCTAGGTGAACTCTTCTTCTTCCACATGATACTGATCAGAAAGGGGATCACAACTTACGAATATGTTGTCGCAATGAGAGCTATGAGTGAAGCACCTCAAGAGGAGGAAGAAGAGGATGGGGTGAACATTGTTTATTCCCCAACAAATTCAGCAACTACTGGATTCAGCGGTGGAAGCTCACTTGGTCTTCCCTACAAGGGTTCATGGTGCACACCTCCAAGGATTTTCGTTGATCAGGATGAAGTGATCCCACACCTGGAGGCTGGGATGGTGCCATCAACCATCGACCCTGACACGGCTGGAAATGCTGAGAGAGCAAACAGAGCCAAGAAGCAAGTGAAGATCAGCGCGTGGAAGCTCGCCAAGCTTGACACCAACGAGGCCATGAAAGCGGCGGCGAGAGCTCGGGCGTCCTCCTCCGTCCTCCGGCCGGTGGACGCTCGCCACCGCGGCGGCCACGACGCCGGCGACCTGAGCTCCAGCGGCAACGGCAGCGTCAGGAGCAGCGTGAGCGCCGCCGCCAAGGAGCAGAGGAGGAGGGCGTCCTCTCTCCCGAGCTCGTGCGCGCAGAGCGTGGCGAGCCAGGACGAGTACGAGCAGAGCGGCAGCAGCGTGATGAGCAGCCCGGTGCGCCTCCACAAGCTCGCGCCGCCGCCATTGCCGGCGGCGCACAACGTGCCGCCTCGGCCGCCGCCGCCGGTGAACGCTGCTCCGGAGGCG] [+] EMBL AK099715 [TTCTTGAACTGCCCTCAAGAAAGCAGGGGAAAGGAAAGGACTCCCCTTTCCACTGGGAGAGAGAAAAGGAGAGAGAGACCTGGAGAAGGGGGGAAAGGGAGGAGGAAGAAGAGGGGAGAGAGGCCATGGTGCGGAAGAATGGGTGGCAGCTCCCAGCACACACCTTCCAGATTATTGCAATTACCGTTTTCTTCCTTCTGGTGGTTGCCTTTTATGCCTTCTTTGCACCATTCCTGGGAAAGCAAGTCCTTGAATATATCGCATTCGGCATCTATACTCCTGTGGCATTTGTTGTCTTCATCCTTTATATCCGGTGCACTAGCATAAATCCTGCAGATCCCGGGATCATGTCAAAGTTTCAAAATGGCTTCCGTAATGCACCAACAAGCGGCACCGGCTTACAGGACACAAATTTGCCAGGAAGGGGTGATGTTGCTACTGGAACGAATTCCCCAACATCTACTTTTAAGAGCTCTCTAGATGGACGTTCTAACCATGCTGGTTTAGCTGCTGGAGATGGAAATAATTTGAGCTCACAACCACCAAGGAGTTCAAGTTGCTCCTTAGTCGGAGGACTTATTTGTGCTCTGTTTGTTGAGGAGGATTGCAGGACGCTTGTTGATTCAGAGCATCAAGCTGATGGAGAAGATGCCTTGTTTTGCACATTATGTAATGCTGAGGTTCGCAAATTCAGTAAACATTGCAGAAGTTGTGATAAATGTGTGGATGGTTTTGATCATCACTGTCGGTGGCTAAATAATTGCGTTGGGCGCAAGAACTATTTCACATTTCTTGCTCTGATGATTACCAGCCTCCTCTGGCTTGCCATTGAAATCGGGGTCGGCATTGCTGTTCTTGTTGTATGCTTCGTCAACAAGAATTCAGAAAGTATTATTCAAGACAAGCTTGCAAATGGTTTAACTCGTCCACCCTTTGCAACTATAGTAGCCATATTTACTCTTCTTTCTATAATCGCTTGTATACCCCTAGGTGAACTCTTCTTCTTCCACATGATACTGATCAGAAAGGGGATCACAACTTACGAATATGTTGTCGCAATGAGAGCTATGAGTGAAGCACCTCAAGAGGAGGAAGAAGAGGATGGGGTGAACATTGTTTATTCCCCAACAAATTCAGCAACTACTGGATTCAGCGGTGGAAGCTCACTTGGTCTTCCCTACAAGGGTTCATGGTGCACACCTCCAAGGATTTTCGTTGATCAGGATGAAGTGATCCCACACCTGGAGGCTGGGATGGTGCCATCAACCATCGACCCTGACACGGCTGGAAATGCTGAGAGAGCAAACAGAGCCAAGAAGCAAGTGAAGATCAGCGCGTGGAAGCTCGCCAAGCTTGACACCAACGAGGCCATGAAAGCGGCGGCGAGAGCTCGGGCGTCCTCCTCCGTCCTCCGGCCGGTGGACGCTCGCCACCGCGGCGGCCACGACGCCGGCGACCTGAGCTCCAGCGGCAACGGCAGCGTCAGGAGCAGCGTGAGCGCCGCCGCCAAGGAGCAGAGGAGGAGGGCGTCCTCTCTCCCGAGCTCGTGCGCGCAGAGCGTGGCGAGCCAGGACGAGTACGAGCAGAGCGGCAGCAGCGTGATGAGCAGCCCGGTGCGCCTCCACAAGCTCGCGCCGCCGCCATTGCCGGCGGCGCACAACGTGCCGCCTCGGCCGCCGCCGCCGGTGAACGCTGCTCCGGAGGCG] consensusID : consensus_2728#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 937 fasta sequence [TGCAAACGATGACCCGTCTCTTCTGAGACAATCTCTCCTGATAAATAAAGAATCAGATATTGTATCATCTGAATGAATATCAGTATGAATCTTCAAGCTGCAAATAGCATTACAAAGAACATATTTATCTGAATTCTTGCAAACAACATTGCTAAATAATCTCTCCGTTTTAGGTTATAAGACGTTTTGACTTTGCTAAAAGTCAAACTATTTCAAGTTTGACTAAGTTTATAGATGAATACAGTAATATTTATAATACTAAATTAGTTTCATCAAATCAATAATTGAATACATTTCCATAATAAATTAGTCTTGGGTTGAAAATGTTACTAATTTTTTTACAAACTTTATCAAACTTAAAACAGTTTGACTTTGATTAAAGCAAAGACGTCTTCTAAAATGAAACGGAGGGAGTAGCGCTGTACTATTTCTCTTCTGAATGATTGCAATGCAGGATGAAGTGATCCCACACCTGGAGGCTGGGATGGTGCCATCAACCATCGACCCTGACACGGCTGGAAATGCTGAGAGAGCAAACAGAGCCAAGAAGCAAGTGAAGATCAGCGCGTGGAAGCTCGCCAAGCTTGACACCAACGAGGCCATGAAAGCGGCGGCGAGAGCTCGGGCGTCCTCCTCCGTCCTCCGGCCGGTGGACGCTCGCCACCGCGGCGGCCACGACGCCGGCGACCTGAGCTCCAGCGGCAACGGCAGCGTCAGGAGCAGCGTGAGCGCCGCCGCCAAGGAGCAGAGGAGGAGGGCGTCCTCTCTCCCGAGCTCGTGCGCGCAGAGCGTGGCGAGCCAGGACGAGTACGAGCAGAGCGGCAGCAGCGTGATGAGCAGCCCGGTGCGCCTCCACAAGCTCGCGCCGCCGCCATTGCCGGCGGCGCACAACGTGCCGCCTCGGCCGCCGCCGCCGGTGAACGCTGCTCCGGAGGCG] [+] EMBL AK106793 [TGCAAACGATGACCCGTCTCTTCTGAGACAATCTCTCCTGATAAATAAAGAATCAGATATTGTATCATCTGAATGAATATCAGTATGAATCTTCAAGCTGCAAATAGCATTACAAAGAACATATTTATCTGAATTCTTGCAAACAACATTGCTAAATAATCTCTCCGTTTTAGGTTATAAGACGTTTTGACTTTGCTAAAAGTCAAACTATTTCAAGTTTGACTAAGTTTATAGATGAATACAGTAATATTTATAATACTAAATTAGTTTCATCAAATCAATAATTGAATACATTTCCATAATAAATTAGTCTTGGGTTGAAAATGTTACTAATTTTTTTACAAACTTTATCAAACTTAAAACAGTTTGACTTTGATTAAAGCAAAGACGTCTTCTAAAATGAAACGGAGGGAGTAGCGCTGTACTATTTCTCTTCTGAATGATTGCAATGCAGGATGAAGTGATCCCACACCTGGAGGCTGGGATGGTGCCATCAACCATCGACCCTGACACGGCTGGAAATGCTGAGAGAGCAAACAGAGCCAAGAAGCAAGTGAAGATCAGCGCGTGGAAGCTCGCCAAGCTTGACACCAACGAGGCCATGAAAGCGGCGGCGAGAGCTCGGGCGTCCTCCTCCGTCCTCCGGCCGGTGGACGCTCGCCACCGCGGCGGCCACGACGCCGGCGACCTGAGCTCCAGCGGCAACGGCAGCGTCAGGAGCAGCGTGAGCGCCGCCGCCAAGGAGCAGAGGAGGAGGGCGTCCTCTCTCCCGAGCTCGTGCGCGCAGAGCGTGGCGAGCCAGGACGAGTACGAGCAGAGCGGCAGCAGCGTGATGAGCAGCCCGGTGCGCCTCCACAAGCTCGCGCCGCCGCCATTGCCGGCGGCGCACAACGTGCCGCCTCGGCCGCCGCCGCCGGTGAACGCTGCTCCGGAGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2728#0 TTCTTGAACTGCCCTCAAGAAAGCAGGGGAAAGGAAAGGACTCCCCTTTCCACTGGGAGA 60 consensus_2728#1 ------------------------------------------------------------ consensus_2728#0 GAGAAAAGGAGAGAGAGACCTGGAGAAGGGGGGAAAGGGAGGAGGAAGAAGAGGGGAGAG 120 consensus_2728#1 ------------------------------------------------------------ consensus_2728#0 AGGCCATGGTGCGGAAGAATGGGTGGCAGCTCCCAGCACACACCTTCCAGATTATTGCAA 180 consensus_2728#1 ------------------------------------------------------------ consensus_2728#0 TTACCGTTTTCTTCCTTCTGGTGGTTGCCTTTTATGCCTTCTTTGCACCATTCCTGGGAA 240 consensus_2728#1 ------------------------------------------------------------ consensus_2728#0 AGCAAGTCCTTGAATATATCGCATTCGGCATCTATACTCCTGTGGCATTTGTTGTCTTCA 300 consensus_2728#1 ------------------------------------------------------------ consensus_2728#0 TCCTTTATATCCGGTGCACTAGCATAAATCCTGCAGATCCCGGGATCATGTCAAAGTTTC 360 consensus_2728#1 ------------------------------------------------------------ consensus_2728#0 AAAATGGCTTCCGTAATGCACCAACAAGCGGCACCGGCTTACAGGACACAAATTTGCCAG 420 consensus_2728#1 ------------------------------------------------------------ consensus_2728#0 GAAGGGGTGATGTTGCTACTGGAACGAATTCCCCAACATCTACTTTTAAGAGCTCTCTAG 480 consensus_2728#1 ------------------------------------------------------------ consensus_2728#0 ATGGACGTTCTAACCATGCTGGTTTAGCTGCTGGAGATGGAAATAATTTGAGCTCACAAC 540 consensus_2728#1 ------------------------------------------------------------ consensus_2728#0 CACCAAGGAGTTCAAGTTGCTCCTTAGTCGGAGGACTTATTTGTGCTCTGTTTGTTGAGG 600 consensus_2728#1 ------------------------------------------------------------ consensus_2728#0 AGGATTGCAGGACGCTTGTTGATTCAGAGCATCAAGCTGATGGAGAAGATGCCTTGTTTT 660 consensus_2728#1 ------------------------------------------------------------ consensus_2728#0 GCACATTATGTAATGCTGAGGTTCGCAAATTCAGTAAACATTGCAGAAGTTGTGATAAAT 720 consensus_2728#1 ------------------------------------------------------------ consensus_2728#0 GTGTGGATGGTTTTGATCATCACTGTCGGTGGCTAAATAATTGCGTTGGGCGCAAGAACT 780 consensus_2728#1 -------TGCAAACGATGAC--CCGTCTCTTCTGAGACAATCTCTCCTGATAAATAAAGA 51 ** *** * * *** * * * *** * * * ** consensus_2728#0 ATTTCACATTTCTTGCTCTGA-TGATTACCAGCCTCCTCTGGCTTGCCATTGAAATCGGG 839 consensus_2728#1 ATCAGATATTGTATCATCTGAATGAATATCAGTATGA---ATCTTCAAGCTGCAAATAGC 108 ** * *** * ***** *** ** *** * *** ** ** * consensus_2728#0 GTCGGCATTGCTGTTCTTGTTGTATGCTTCGTCAACAAGAATTCAGAAAGTATTATTCAA 899 consensus_2728#1 ATTACAAAGAACATATTTATCTGAATTCTTGCAAACAACATTGCTAAATAATCTCTCCGT 168 * * * ** * * * * ***** * * * ** * * * consensus_2728#0 GACAAGCTTGCAAATGGTTTAACTCGTCCACCCTTTGCAACTATAGTAGCCATATTTACT 959 consensus_2728#1 TTTAGGTTATAAGACGTTTTGAC----------TTTGC-----TAAAAGTCAAACTATTT 213 * * * * * * *** ** ***** ** ** ** * * * consensus_2728#0 CTTCTTTCTATAATCGCTTGTATACCCCTAGGTGAACTCTTCTTCTTCCACATGATACTG 1019 consensus_2728#1 CAAGTTTGACTAA--GTTTATAGATGAATACAGTAATATTTATAATACTAAATTAGTTTC 271 * *** *** * ** ** * ** ** ** * * * * ** * * consensus_2728#0 ATCAGAAAGGGGATCACAACTTACGAATATGTTGTCGCAATGAG--AGCTATGAGTGAAG 1077 consensus_2728#1 ATCAAA-------TCAATAATT--GAATACATTTCCATAATAAATTAGTCTTGGGTTGAA 322 **** * *** * ** ***** ** * *** * ** ** ** * consensus_2728#0 CACCTCAAGAGGAGGAAGAAGAGGATGGGGTGAACATTGTTTATTCCCCAACAAATTCAG 1137 consensus_2728#1 AATGTTACTA-----------ATTTTTTTACAAACTTTATCAAACTTAAAACAGTTT--- 368 * * * * * * *** ** * * **** ** consensus_2728#0 CAACTACTGGATTCAGCGGTGGAAGCTCACTTGGTCTTCCCTACAAGGGTTCATGGTGCA 1197 consensus_2728#1 -GACT--TTGATTAAAGCAAAGACG-TCTTCTAAAATGAAACGGAGGGAGTAGCGCTGTA 424 *** * **** * ** * ** * * * ** * * ** * consensus_2728#0 CACCTCCAA----GGATTTTCGTTGATCAGGATGAAGTGATCCCACACCTGGAGGCTGGG 1253 consensus_2728#1 CTATTTCTCTTCTGAATGATTGCAATGCAGGATGAAGTGATCCCACACCTGGAGGCTGGG 484 * * * * ** * * ********************************* consensus_2728#0 ATGGTGCCATCAACCATCGACCCTGACACGGCTGGAAATGCTGAGAGAGCAAACAGAGCC 1313 consensus_2728#1 ATGGTGCCATCAACCATCGACCCTGACACGGCTGGAAATGCTGAGAGAGCAAACAGAGCC 544 ************************************************************ consensus_2728#0 AAGAAGCAAGTGAAGATCAGCGCGTGGAAGCTCGCCAAGCTTGACACCAACGAGGCCATG 1373 consensus_2728#1 AAGAAGCAAGTGAAGATCAGCGCGTGGAAGCTCGCCAAGCTTGACACCAACGAGGCCATG 604 ************************************************************ consensus_2728#0 AAAGCGGCGGCGAGAGCTCGGGCGTCCTCCTCCGTCCTCCGGCCGGTGGACGCTCGCCAC 1433 consensus_2728#1 AAAGCGGCGGCGAGAGCTCGGGCGTCCTCCTCCGTCCTCCGGCCGGTGGACGCTCGCCAC 664 ************************************************************ consensus_2728#0 CGCGGCGGCCACGACGCCGGCGACCTGAGCTCCAGCGGCAACGGCAGCGTCAGGAGCAGC 1493 consensus_2728#1 CGCGGCGGCCACGACGCCGGCGACCTGAGCTCCAGCGGCAACGGCAGCGTCAGGAGCAGC 724 ************************************************************ consensus_2728#0 GTGAGCGCCGCCGCCAAGGAGCAGAGGAGGAGGGCGTCCTCTCTCCCGAGCTCGTGCGCG 1553 consensus_2728#1 GTGAGCGCCGCCGCCAAGGAGCAGAGGAGGAGGGCGTCCTCTCTCCCGAGCTCGTGCGCG 784 ************************************************************ consensus_2728#0 CAGAGCGTGGCGAGCCAGGACGAGTACGAGCAGAGCGGCAGCAGCGTGATGAGCAGCCCG 1613 consensus_2728#1 CAGAGCGTGGCGAGCCAGGACGAGTACGAGCAGAGCGGCAGCAGCGTGATGAGCAGCCCG 844 ************************************************************ consensus_2728#0 GTGCGCCTCCACAAGCTCGCGCCGCCGCCATTGCCGGCGGCGCACAACGTGCCGCCTCGG 1673 consensus_2728#1 GTGCGCCTCCACAAGCTCGCGCCGCCGCCATTGCCGGCGGCGCACAACGTGCCGCCTCGG 904 ************************************************************ consensus_2728#0 CCGCCGCCGCCGGTGAACGCTGCTCCGGAGGCG 1706 consensus_2728#1 CCGCCGCCGCCGGTGAACGCTGCTCCGGAGGCG 937 ********************************* |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||