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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_274#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 820 fasta sequence
[GCGCCGCCGCCTCCTCTCGCGCGGGCGCTGTACCGCCCCAGCCGTCGACACGGGCGCGGCGCTCCGGAGCCTGCAGCCGTCGTCGCGCCGCCAGGCGCCTCCAACCGTCCGCCGGCCGGCGCTAGCGCCCTCCGTCGCCAGCACGCCGTCCGCCGCCACCGATTCCCCTGCCGGCTGCCGACTACAGACCATGGCTTCGTTCTCCTCCCCGGTAAGCTCCGACAGCGACGACGCAAGTTGCTAGAGTGAGGGATGGAGAACGGGGAGATCGAGGGGGCAGCGGACGACGGGGTGCCGGTGCCCGCGCCGCCCAACGGCAGGAGGTATCGCCCCGTCGGCTCCAGCGATCGCGCCGTCATCCAGATGACCTCCATGGAGCCCGGCTCCTCCTCCTCTACCGCTGTGGCAGCCGTCAGTGGCATCACGCCCCAGCCACCAAGGAATCTAACGGTGGATCCAAGCATGCAAGAAGATCACACTGTTTCACAAGGGGATTCAAAGCTTGAGCTTTTTGGTTTTGACTCTCTTGTAAATATTTTGGGCCTCAAGAGCATGACAGGAGAACAGATTCAGGCCCCTTCCAGTCCTAGGGACGGTGAGGATGTTGCAATTACGATTGGACGCCCAAAGGAAACTGGACCCAAGTTTGGTACCATGATGGGTGTCTTTGTCCCATGCTTGCAGAATATATTGGGAATCATTTATTATATCCGTTTTACATGGATTGTACGTATGGCAGGTGTATGGCAGTCGCTTGTTTTAGTCTCGTTCTGTGGTGCATGCACATTTTTAACTGGAATATCATTAAGTGCCATTGCAA]
[+] EMBL CB649599 [GCGCCGCCGCCTCCTCTCGCGCGGGCGCTGTACCGCCCCAGCCGTCGACACGGGCGCGGCGCTCCGGAGCCTGCAGCCGTCGTCGCGCCGCCAGGCGCCTCCAACCGTCCGCCGGCCGGCGCTAGCGCCCTCCGTCGCCAGCACGCCGTCCGCCGCCACCGATTCCCCTGCCGGCTGCCGACTACAGACCATGGCTTCGTTCTCCTCCCCGGTAAGCTCCGACAGCGACGACGCAAGTTGCTAGAGTGAGGGATGGAGAACGGGGAGATCGAGGGGGCAGCGGACGACGGGGTGCCGGTGCCCGCGCCGCCCAACGGCAGGAGGTATCGCCCCGTCGGCTCCAGCGATCGCGCCGTCATCCAGATGACCTCCATGGAGCCCGGCTCCTCCTCCTCTACCGCTGTGGCAGCCGTCAGTGGCATCACGCCCCAGCCACCAAGGAATCTAACGGTGGATCCAAGCATGCAAGAAGATCACACTGTTTCACAAGGGGATTCAAAGCTTGAGCTTTTTGGTTTTGACTCTCTTGTAAATATTTTGGGCCTCAAGAGCATGACAGGAGAACAGATTCAGGCCCCTTCCAGTCCTAGGGACGGTGAGGATGTTGCAATTACGATTGGACGCCCAAAGGAAACTGGACCCAAGTTTGGTACCATGATGGGTGTCTTTGTCCCATGCTTGCAGAATATATTGGGAATCATTTATTATATCCGTTTTACATGGATTGTACGTATGGCAGGTGTATGGCAGTCGCTTGTTTTAGTCTCGTTCTGTGGTGCATGCACATTTTTAACTGGAATATCATTAAGTGCCATTGCAA]
consensusID : consensus_274#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 771 fasta sequence
[TCCAGATCCAGACGCAGACCGCTCCGCCACACCGGCCACCAGGCGCGCGCGCCGCCGCCTCCTCTCGCGCGGGCGCTGTACCGCCCCAGCCGTCGACACGGGCGCGGCGCTCCGGAGCCTGCAGCCGTCGTCGCGCCGCCAGGCGCCTCCAACCGTCCGCCGGCCGGCGCTAGCGCCCTCCGTCGCCAGCACGCCGTCCGCCGCCACCGATTCCCCTGCCGGCTGCCGACTACAGACCATGGCTTCGTTCTCCTCCCCGGTAAGCTCCGACAGCGACGACGCAAGGTGAGCACATGCTACAATCCCTAGTCCCTTCTCTGCTGGTGTGCGTCGCGGCGGTGTGGATCTGGATCACGCTGGCCGTGGAGGGGGTTCTCTCTTTGCAGGAGGTGGCGCTAAACCCTATATCTCACTGTGCGTTGTAGTTGCTAGAGTGAGGGATGGAGAACGGGGAGATCGAGGGGGCAGCGGACGACGGGGTGCCGGTGCCCGCGCCGCCCAACGGCAGGAGGTATCGCCCCGTCGGCTCCAGCGATCGCGCCGTCATCCAGATGACCTCCATGGAGCCCGGCTCCTCCTCCTCTACCGCTGTGGCAGCCGTCAGTGGCATCACGCCCCAGCCACCAAGGTATATGGAAGCTTCGCTTCAAATTTTGGAGATCGAATTTTAGCAATATTCTCTTCTAGGGGGAGTAGACTAAAACACTTGTACTGCTTGAATTAGTATACCATTGCTTGTGCAAATCCGATCGTGCATTGTCTTGCTCGTGC]
[+] EMBL AK108337 [TCCAGATCCAGACGCAGACCGCTCCGCCACACCGGCCACCAGGCGCGCGCGCCGCCGCCTCCTCTCGCGCGGGCGCTGTACCGCCCCAGCCGTCGACACGGGCGCGGCGCTCCGGAGCCTGCAGCCGTCGTCGCGCCGCCAGGCGCCTCCAACCGTCCGCCGGCCGGCGCTAGCGCCCTCCGTCGCCAGCACGCCGTCCGCCGCCACCGATTCCCCTGCCGGCTGCCGACTACAGACCATGGCTTCGTTCTCCTCCCCGGTAAGCTCCGACAGCGACGACGCAAGGTGAGCACATGCTACAATCCCTAGTCCCTTCTCTGCTGGTGTGCGTCGCGGCGGTGTGGATCTGGATCACGCTGGCCGTGGAGGGGGTTCTCTCTTTGCAGGAGGTGGCGCTAAACCCTATATCTCACTGTGCGTTGTAGTTGCTAGAGTGAGGGATGGAGAACGGGGAGATCGAGGGGGCAGCGGACGACGGGGTGCCGGTGCCCGCGCCGCCCAACGGCAGGAGGTATCGCCCCGTCGGCTCCAGCGATCGCGCCGTCATCCAGATGACCTCCATGGAGCCCGGCTCCTCCTCCTCTACCGCTGTGGCAGCCGTCAGTGGCATCACGCCCCAGCCACCAAGGTATATGGAAGCTTCGCTTCAAATTTTGGAGATCGAATTTTAGCAATATTCTCTTCTAGGGGGAGTAGACTAAAACACTTGTACTGCTTGAATTAGTATACCATTGCTTGTGCAAATCCGATCGTGCATTGTCTTGCTCGTGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_274#0 ------------------------------------------------GCGCCGCCGCCT 12
consensus_274#1 TCCAGATCCAGACGCAGACCGCTCCGCCACACCGGCCACCAGGCGCGCGCGCCGCCGCCT 60
************
consensus_274#0 CCTCTCGCGCGGGCGCTGTACCGCCCCAGCCGTCGACACGGGCGCGGCGCTCCGGAGCCT 72
consensus_274#1 CCTCTCGCGCGGGCGCTGTACCGCCCCAGCCGTCGACACGGGCGCGGCGCTCCGGAGCCT 120
************************************************************
consensus_274#0 GCAGCCGTCGTCGCGCCGCCAGGCGCCTCCAACCGTCCGCCGGCCGGCGCTAGCGCCCTC 132
consensus_274#1 GCAGCCGTCGTCGCGCCGCCAGGCGCCTCCAACCGTCCGCCGGCCGGCGCTAGCGCCCTC 180
************************************************************
consensus_274#0 CGTCGCCAGCACGCCGTCCGCCGCCACCGATTCCCCTGCCGGCTGCCGACTACAGACCAT 192
consensus_274#1 CGTCGCCAGCACGCCGTCCGCCGCCACCGATTCCCCTGCCGGCTGCCGACTACAGACCAT 240
************************************************************
consensus_274#0 GGCTTCGTTCTCCTCCCCGGTAAGCTCCGACAGCGACGACGCAAGTTGCTAGAGTGAGGG 252
consensus_274#1 GGCTTCGTTCTCCTCCCCGGTAAGCTCCGACAGCGACGACGCAAGGTG------------ 288
********************************************* **
consensus_274#0 ATGGAGAACGGGGAGATCGAGGGGGCAGCGGACGACGGGGTGCCGGTGCCCGCGCCGCCC 312
consensus_274#1 ----------AGCACATGCTACAATCCCTAGTCCCTTCTCTGCTGGTGT--GCGTCGC-- 334
* * ** * * * *** **** *** ***
consensus_274#0 AACGGCAGGAGGTATCGCCCCGTCGGCTCCAGCGATCGCGCCGTCATCCAGATGACCTCC 372
consensus_274#1 GGCGGTGTGGATCTGGATCACGCTGGCCGTGGAGGGGGTTCTCTCTTTGCAGGAGGTGGC 394
*** * * ** *** * * * * ** * *
consensus_274#0 ATGGAGCCCGGCTCCTCCTCCTCTACCGCTGTGGCAGCCGTCAGTGGCATCACGCCCCAG 432
consensus_274#1 GCTAAACCCTATATCTCACTGTGCGTTGTAGTTGCTAGAGTGAGGGATGG-AGAACGGGG 453
* *** *** * * ** ** ** ** * * * *
consensus_274#0 CCACCAAGGAATCTAACGGTGGATCCAAGCATGCAAGAAGATCACACTGTTTCACAAGGG 492
consensus_274#1 AGATCGAGGGG----GCAGCGGACGACGGGGTGCCGGT-GCCCGCGCCGCCCAACGGCAG 508
* * *** * * *** * *** * * * * * * ** *
consensus_274#0 GATTCAAAGCTTGAGCTTTTTGGTTTTGACTCTCTTGTAAATATTTTGGGCCTCAAGAGC 552
consensus_274#1 GA-----GGTATCGCCCCGTCGGCTCCAGCGATCGCGCCGTCATCCAG------ATGACC 557
** * * * * ** * * ** * ** * * ** *
consensus_274#0 ATGACAGGAGAACAGATTCAGGCCCCTTCCAGTCCTAGGGACGGTGAGGATGTTGCAATT 612
consensus_274#1 TCCAT-GGAGCCCGGCTCCTCCTCCTCTACCGCTGTGGCAGCCGTCAG-----TGGCATC 611
* **** * * * * ** * * * * * * ** ** ** **
consensus_274#0 ACGATTGGACGCCCAAAGGAAACTGGACCCAAGTTTGGTACCATGATGGGTGTCTTTGTC 672
consensus_274#1 ACGCCCCAGCCACCAAGGTATATGGAAGCTTCGCTTCAAATTTTGGAGATCGAATTTTAG 671
*** * **** * * * * * * * ** * ** * * ***
consensus_274#0 CCATGCTTGCAGAATATATTGGGAATCATTTATTATATCCGTTTTACATGGATT-GTACG 731
consensus_274#1 CAATATTCTCT---TCTAGGGGGAGTAGACTAAAACACTTGTACTGCTTGAATTAGTATA 728
* ** * * * ** **** * ** * * ** * * ** *** ***
consensus_274#0 T-ATGGCAGGTGTATGGCAGTCGCTTGTTTTAGTCTCGTTCTGTGGTGCATGCACATTTT 790
consensus_274#1 CCATTGCTTGTGCAAATCCGAT-CGTGCATT-GTCTTGCTC-GTGC-------------- 771
** ** *** * * * * ** ** **** * ** ***
consensus_274#0 TAACTGGAATATCATTAAGTGCCATTGCAA 820
consensus_274#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||