These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2747#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CATCATAGTAATTGATTATACTTCATTACTCGCAATTGCAGGAACACCACTTTTTACACATGGTATGACATGGAATTGAGGGGAGTTTTGCTCCATGGAAAGCTGCCTTAAAACATGTAGCTTCATCAGAGCTCCCACGCAATTCAGAATTAGCCTAAAATAATCAAGAAGCAGTAGCACTAGTACATTGATTAAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGTGGCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA] [+] EMBL CB684402 [CATCATAGTAATTGATTATACTTCATTACTCGCAATTGCAGGAACACCACTTTTTACACATGGTATGACATGGAATTGAGGGGAGTTTTGCTCCATGGAAAGCTGCCTTAAAACATGTAGCTTCATCAGAGCTCCCACGCAATTCAGAATTAGCCTAAAATAATCAAGAAGCAGTAGCACTAGTACATTGATTAAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGTGGCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA] consensusID : consensus_2747#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 514 fasta sequence [ACTACTCTCAGTTGTTGCAGCCGTCTTCTTTGCAGTTTGGTCCGAACCATCGCCATCTCCATCTCCATCGAACGATCACACGTCGGAGTATCAGAGGTGAGCGGCGGCGGCGTCGGAGGAGGAGGAGGAGCAATGGTGAAGAGTGGGCAGGAGGCGGCGCCGGGGATCAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGGGGCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA] [+] EMBL CB684401 [ACTACTCTCAGTTGTTGCAGCCGTCTTCTTTGCAGTTTGGTCCGAACCATCGCCATCTCCATCTCCATCGAACGATCACACGTCGGAGTATCAGAGGTGAGCGGCGGCGGCGTCGGAGGAGGAGGAGGAGCAATGGTGAAGAGTGGGCAGGAGGCGGCGCCGGGGATCAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGGGGCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2747#0 CATCATAGTAATTGATTATACTTCATTACTCGCAATTGCAGGAACACCACTTTTTACACA 60 consensus_2747#1 ------------------------ACTACTCTCAGTTGTTGCAGCCGTCTTCTTTGCA-- 34 * ***** ** *** * * * * *** ** consensus_2747#0 TGGTATGACATGGAATTGAGGGGAGTTTTGCTCCATGGAAAGCT---GCCTTAAAACATG 117 consensus_2747#1 --GTTTGGTCCGAACCATCGCCATCTCCATCTCCATCGAACGATCACACGTCGGAGTATC 92 ** ** * * * * ****** *** * * * * * ** consensus_2747#0 TAGCTTCATCAGAGCTCCCACGCAATTCAGAATTAGCCTAAAATAATCAAGAAGCAGTAG 177 consensus_2747#1 AGAGGTGAGCGGCGGCGGCGTCGGAGGAGGAGGAGG--AGCAATGGTGAAGAGTGGGCAG 150 * * * * * * * ** * *** * **** * ** consensus_2747#0 CAC-TAGTACATTGATTAAGTATATACTACATATATATATGTAGATAATAGTTATGAATT 236 consensus_2747#1 GAGGCGGCGCCGGGGATCAGTATATACTACATATATATATGTAGATAATAGTTATGAATT 210 * * * * * ****************************************** consensus_2747#0 GAATGATTATATGATTATTATTGTACCGTGGCCAATTCTTGGTCACGTACTGATATATCA 296 consensus_2747#1 GAATGATTATATGATTATTATTGTACCGGGGCCAATTCTTGGTCACGTACTGATATATCA 270 **************************** ******************************* consensus_2747#0 GTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGAT 356 consensus_2747#1 GTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGAT 330 ************************************************************ consensus_2747#0 CGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAG 416 consensus_2747#1 CGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAG 390 ************************************************************ consensus_2747#0 GAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGC 476 consensus_2747#1 GAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGC 450 ************************************************************ consensus_2747#0 GCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGAC 536 consensus_2747#1 GCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGAC 510 ************************************************************ consensus_2747#0 TGGA 540 consensus_2747#1 TGGA 514 **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||