Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2747 cluster # 2747       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2747#0 length = 540 sequences # 1  
consensus_2747#1 length = 514 sequences # 1  

consensusID : consensus_2747#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence
                              [CATCATAGTAATTGATTATACTTCATTACTCGCAATTGCAGGAACACCACTTTTTACACATGGTATGACATGGAATTGAGGGGAGTTTTGCTCCATGGAAAGCTGCCTTAAAACATGTAGCTTCATCAGAGCTCCCACGCAATTCAGAATTAGCCTAAAATAATCAAGAAGCAGTAGCACTAGTACATTGATTAAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGTGGCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA]

[+] EMBL CB684402             [CATCATAGTAATTGATTATACTTCATTACTCGCAATTGCAGGAACACCACTTTTTACACATGGTATGACATGGAATTGAGGGGAGTTTTGCTCCATGGAAAGCTGCCTTAAAACATGTAGCTTCATCAGAGCTCCCACGCAATTCAGAATTAGCCTAAAATAATCAAGAAGCAGTAGCACTAGTACATTGATTAAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGTGGCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA]


>consensus_2747#0 CATCATAGTAATTGATTATACTTCATTACTCGCAATTGCAGGAACACCACTTTTTACACA TGGTATGACATGGAATTGAGGGGAGTTTTGCTCCATGGAAAGCTGCCTTAAAACATGTAG CTTCATCAGAGCTCCCACGCAATTCAGAATTAGCCTAAAATAATCAAGAAGCAGTAGCAC TAGTACATTGATTAAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAAT GATTATATGATTATTATTGTACCGTGGCCAATTCTTGGTCACGTACTGATATATCAGTCA GTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGAT CACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGA AGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCG GCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA



consensusID : consensus_2747#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 514
fasta sequence
                              [ACTACTCTCAGTTGTTGCAGCCGTCTTCTTTGCAGTTTGGTCCGAACCATCGCCATCTCCATCTCCATCGAACGATCACACGTCGGAGTATCAGAGGTGAGCGGCGGCGGCGTCGGAGGAGGAGGAGGAGCAATGGTGAAGAGTGGGCAGGAGGCGGCGCCGGGGATCAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGGGGCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA]

[+] EMBL CB684401             [ACTACTCTCAGTTGTTGCAGCCGTCTTCTTTGCAGTTTGGTCCGAACCATCGCCATCTCCATCTCCATCGAACGATCACACGTCGGAGTATCAGAGGTGAGCGGCGGCGGCGTCGGAGGAGGAGGAGGAGCAATGGTGAAGAGTGGGCAGGAGGCGGCGCCGGGGATCAGTATATACTACATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGGGGCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGACTGGA]


>consensus_2747#1 ACTACTCTCAGTTGTTGCAGCCGTCTTCTTTGCAGTTTGGTCCGAACCATCGCCATCTCC ATCTCCATCGAACGATCACACGTCGGAGTATCAGAGGTGAGCGGCGGCGGCGTCGGAGGA GGAGGAGGAGCAATGGTGAAGAGTGGGCAGGAGGCGGCGCCGGGGATCAGTATATACTAC ATATATATATGTAGATAATAGTTATGAATTGAATGATTATATGATTATTATTGTACCGGG GCCAATTCTTGGTCACGTACTGATATATCAGTCAGTAATTGAATTTGCGCTTAATGGTGA TCACTGGAGAGTGTGGAGGCTTCGATCGATCGATCACCTCCATGGATTTGGTCTCCATCG ATCTCCGGTTCGATCGATCAGTTGAGGGAGGAGAAGCTCCAGAGGCTGATCTCACCTTCG TCCTCCCACTCGGCGGCGAGGGACTCCGGCGCCGGCGAGAAGAACGTGCTGCATGGGTCC ATCATGGAGTAGTCCATGCACTTGGGCGACTGGA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2747#0      CATCATAGTAATTGATTATACTTCATTACTCGCAATTGCAGGAACACCACTTTTTACACA 60
consensus_2747#1      ------------------------ACTACTCTCAGTTGTTGCAGCCGTCTTCTTTGCA-- 34
                                              * ***** ** ***  * * *     * *** **  

consensus_2747#0      TGGTATGACATGGAATTGAGGGGAGTTTTGCTCCATGGAAAGCT---GCCTTAAAACATG 117
consensus_2747#1      --GTTTGGTCCGAACCATCGCCATCTCCATCTCCATCGAACGATCACACGTCGGAGTATC 92
                        ** **    * *     *     *    ****** *** * *    * *   *  ** 

consensus_2747#0      TAGCTTCATCAGAGCTCCCACGCAATTCAGAATTAGCCTAAAATAATCAAGAAGCAGTAG 177
consensus_2747#1      AGAGGTGAGCGGCGGCGGCGTCGGAGGAGGAGGAGG--AGCAATGGTGAAGAGTGGGCAG 150
                           * * * * *    *     *    **    *     ***  * ****    * **

consensus_2747#0      CAC-TAGTACATTGATTAAGTATATACTACATATATATATGTAGATAATAGTTATGAATT 236
consensus_2747#1      GAGGCGGCGCCGGGGATCAGTATATACTACATATATATATGTAGATAATAGTTATGAATT 210
                       *    *  *   *  * ******************************************

consensus_2747#0      GAATGATTATATGATTATTATTGTACCGTGGCCAATTCTTGGTCACGTACTGATATATCA 296
consensus_2747#1      GAATGATTATATGATTATTATTGTACCGGGGCCAATTCTTGGTCACGTACTGATATATCA 270
                      **************************** *******************************

consensus_2747#0      GTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGAT 356
consensus_2747#1      GTCAGTAATTGAATTTGCGCTTAATGGTGATCACTGGAGAGTGTGGAGGCTTCGATCGAT 330
                      ************************************************************

consensus_2747#0      CGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAG 416
consensus_2747#1      CGATCACCTCCATGGATTTGGTCTCCATCGATCTCCGGTTCGATCGATCAGTTGAGGGAG 390
                      ************************************************************

consensus_2747#0      GAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGC 476
consensus_2747#1      GAGAAGCTCCAGAGGCTGATCTCACCTTCGTCCTCCCACTCGGCGGCGAGGGACTCCGGC 450
                      ************************************************************

consensus_2747#0      GCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGAC 536
consensus_2747#1      GCCGGCGAGAAGAACGTGCTGCATGGGTCCATCATGGAGTAGTCCATGCACTTGGGCGAC 510
                      ************************************************************

consensus_2747#0      TGGA 540
consensus_2747#1      TGGA 514
                      ****




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)