cluster # 2757

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Oryza sativa
cluster # 2757 cluster # 2757 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2757#0 length = 682 sequences # 1

consensus_2757#1 length = 540 sequences # 1

consensusID : consensus_2757#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 682
fasta sequence

                              [CAATAGAGGCCAGTTTACATCTTCAAACCCAAAGGGTGATGAAGCAACATCGGAATTGACAGCTTCAGATGGCTCCCCAAACTGGGGATCCAGTGAAAGGTCGGGCCTCCCTCTGCTGCTGAATGCCATCACTGTGGTATAAATGCAAAGGCTACACCTATGATGCGTCGTGGACCTGATGGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGGGCAAACAAGGGGATGTTGAGGGACCTATCAAAAGCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAATGGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGCCACGAATCATCAACGTGAGTATAGCGATGTTTGTCTTGTGGAGGATCGCGAACATCATGCCGGCATTATATCCATGTAGTTTAACTGTCTGTACTATAACTTGATGAGAACCTGTTAGGTACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAATGTTGTTCTGCATATGTTGTAAGCCATGAAAAATCATGCTTCCGGTCATTATGGCCGTAGCAATTTTATTTCTTGTTAGACTCTTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGAATATTTTACTTGTGTCTTGTAGTTATTTAAAAAAAAAAAAAAAAA]

[+] EMBL AU101418             [CAATAGAGGCCAGTTTACATCTTCAAACCCAAAGGGTGATGAAGCAACATCGGAATTGACAGCTTCAGATGGCTCCCCAAACTGGGGATCCAGTGAAAGGTCGGGCCTCCCTCTGCTGCTGAATGCCATCACTGTGGTATAAATGCAAAGGCTACACCTATGATGCGTCGTGGACCTGATGGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGGGCAAACAAGGGGATGTTGAGGGACCTATCAAAAGCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAATGGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGCCACGAATCATCAACGTGAGTATAGCGATGTTTGTCTTGTGGAGGATCGCGAACATCATGCCGGCATTATATCCATGTAGTTTAACTGTCTGTACTATAACTTGATGAGAACCTGTTAGGTACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAATGTTGTTCTGCATATGTTGTAAGCCATGAAAAATCATGCTTCCGGTCATTATGGCCGTAGCAATTTTATTTCTTGTTAGACTCTTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGAATATTTTACTTGTGTCTTGTAGTTATTTAAAAAAAAAAAAAAAAA]




>consensus_2757#0
CAATAGAGGCCAGTTTACATCTTCAAACCCAAAGGGTGATGAAGCAACATCGGAATTGAC
AGCTTCAGATGGCTCCCCAAACTGGGGATCCAGTGAAAGGTCGGGCCTCCCTCTGCTGCT
GAATGCCATCACTGTGGTATAAATGCAAAGGCTACACCTATGATGCGTCGTGGACCTGAT
GGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGGGCAAACAAGGGGATGTTGAGG
GACCTATCAAAAGCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAAT
GGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGC
CACGAATCATCAACGTGAGTATAGCGATGTTTGTCTTGTGGAGGATCGCGAACATCATGC
CGGCATTATATCCATGTAGTTTAACTGTCTGTACTATAACTTGATGAGAACCTGTTAGGT
ACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAATGTTGTTCTGCATATGTTGTAAG
CCATGAAAAATCATGCTTCCGGTCATTATGGCCGTAGCAATTTTATTTCTTGTTAGACTC
TTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGAATATTTTACTTGTGTCTTGTAGT
TATTTAAAAAAAAAAAAAAAAA

consensusID : consensus_2757#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 540
fasta sequence

                              [CACCTATGATGCGTCGTGGACCTGATGGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGGCAAACAAGGGGATGTTGAGGGACCTATCAAAGCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAATGGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGCCACGAATCATCAACGTGAGTATAGCGATGTTTGTCTTGTGAGGATCGCGAACATCATGCCGGCATTATATCCATGTAGTTTAACTGTCTGTACTATAACTTGATGAGAACCTGTTAGGTACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAATGTTGTTCTGCATATGTTGTAAGCCATGAAAAATCATGCTTCCGGTCATTATGGCCATAGCAATTTTATTTCTTGTTAGACTCTTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGAATATTTTACTTGTGTCTTGTAGTTATTTATATTTATCTCAAAATTGATTTATCCCAAAAA]

[+] EMBL BI813347             [CACCTATGATGCGTCGTGGACCTGATGGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGGCAAACAAGGGGATGTTGAGGGACCTATCAAAGCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAATGGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGCCACGAATCATCAACGTGAGTATAGCGATGTTTGTCTTGTGAGGATCGCGAACATCATGCCGGCATTATATCCATGTAGTTTAACTGTCTGTACTATAACTTGATGAGAACCTGTTAGGTACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAATGTTGTTCTGCATATGTTGTAAGCCATGAAAAATCATGCTTCCGGTCATTATGGCCATAGCAATTTTATTTCTTGTTAGACTCTTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGAATATTTTACTTGTGTCTTGTAGTTATTTATATTTATCTCAAAATTGATTTATCCCAAAAA]




>consensus_2757#1
CACCTATGATGCGTCGTGGACCTGATGGGCCAAGAACATTATGCAATGCCTGTGGCCTCA
TGTGGCAAACAAGGGGATGTTGAGGGACCTATCAAAGCACCTCCCACACCTATTCAAGTT
GTGGCATCAGTTAATGATGGTAATGGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATT
CCTGCACCAGCCACTGTCAATGGCCACGAATCATCAACGTGAGTATAGCGATGTTTGTCT
TGTGAGGATCGCGAACATCATGCCGGCATTATATCCATGTAGTTTAACTGTCTGTACTAT
AACTTGATGAGAACCTGTTAGGTACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAA
TGTTGTTCTGCATATGTTGTAAGCCATGAAAAATCATGCTTCCGGTCATTATGGCCATAG
CAATTTTATTTCTTGTTAGACTCTTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGA
ATATTTTACTTGTGTCTTGTAGTTATTTATATTTATCTCAAAATTGATTTATCCCAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2757#0      CAATAGAGGCCAGTTTACATCTTCAAACCCAAAGGGTGATGAAGCAACATCGGAATTGAC 60
consensus_2757#1      ------------------------------------------------------------
                                                                                  

consensus_2757#0      AGCTTCAGATGGCTCCCCAAACTGGGGATCCAGTGAAAGGTCGGGCCTCCCTCTGCTGCT 120
consensus_2757#1      ------------------------------------------------------------
                                                                                  

consensus_2757#0      GAATGCCATCACTGTGGTATAAATGCAAAGGCTACACCTATGATGCGTCGTGGACCTGAT 180
consensus_2757#1      ----------------------------------CACCTATGATGCGTCGTGGACCTGAT 26
                                                        **************************

consensus_2757#0      GGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGGGCAAACAAGGGGATGTTGAGG 240
consensus_2757#1      GGGCCAAGAACATTATGCAATGCCTGTGGCCTCATGTGG-CAAACAAGGGGATGTTGAGG 85
                      *************************************** ********************

consensus_2757#0      GACCTATCAAAAGCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAAT 300
consensus_2757#1      GACCTATCAAA-GCACCTCCCACACCTATTCAAGTTGTGGCATCAGTTAATGATGGTAAT 144
                      *********** ************************************************

consensus_2757#0      GGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGC 360
consensus_2757#1      GGAAGTGCTGCAGCACCTACCACCGAGCAAGAAATTCCTGCACCAGCCACTGTCAATGGC 204
                      ************************************************************

consensus_2757#0      CACGAATCATCAACGTGAGTATAGCGATGTTTGTCTTGTGGAGGATCGCGAACATCATGC 420
consensus_2757#1      CACGAATCATCAACGTGAGTATAGCGATGTTTGTCTTGTG-AGGATCGCGAACATCATGC 263
                      **************************************** *******************

consensus_2757#0      CGGCATTATATCCATGTAGTTTAACTGTCTGTACTATAACTTGATGAGAACCTGTTAGGT 480
consensus_2757#1      CGGCATTATATCCATGTAGTTTAACTGTCTGTACTATAACTTGATGAGAACCTGTTAGGT 323
                      ************************************************************

consensus_2757#0      ACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAATGTTGTTCTGCATATGTTGTAAG 540
consensus_2757#1      ACCTAGGCCATTTCTTTACCATCATTTAGGGTTTGAATGTTGTTCTGCATATGTTGTAAG 383
                      ************************************************************

consensus_2757#0      CCATGAAAAATCATGCTTCCGGTCATTATGGCCGTAGCAATTTTATTTCTTGTTAGACTC 600
consensus_2757#1      CCATGAAAAATCATGCTTCCGGTCATTATGGCCATAGCAATTTTATTTCTTGTTAGACTC 443
                      ********************************* **************************

consensus_2757#0      TTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGAATATTTTACTTGTGTCTTGTAGT 660
consensus_2757#1      TTGGGTGGAAGTGAGAACAGAGAAGGTGATGAAGTGAATATTTTACTTGTGTCTTGTAGT 503
                      ************************************************************

consensus_2757#0      TATTTAAAAAAAAAAAAAAAAA--------------- 682
consensus_2757#1      TATTTATATTTATCTCAAAATTGATTTATCCCAAAAA 540
                      ****** *   *    ****