cluster # 2759

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2759 cluster # 2759 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2759#0 length = 700 sequences # 1

consensus_2759#1 length = 599 sequences # 1

consensusID : consensus_2759#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 700
fasta sequence

                              [AACATCTGCCTCTTTCCTCTTTCCTCCCCTCCCCTTCCCTTCTCGGCGACGCCTTCGAGAGGATGGACGGCGAGACGCTCTCCTGGGCGGTGCCGGAGTGCGGCGACGAGTTCGCGCTCTGCTTCCTTGACGAGGCCGCCTGCGCCGCCGTCTCCGGCGCCATCTCCACGGTGACGGCCTCGCGGACAGGCTCGCCGAGCTGCGCGTGGCGAGGCAGGAGGGTGCCCCCGCCGGAGGTGACATCGCCGGCCGGCTTGCTGCGCTCAGCAGGCTCGCCGGAGCTATGCTTGCTGCGCTCAGCATAGGCCGGAGGCGACGATGAGCAGCGGCTGCGCGACGACGGGAGCGGCGGCGCGACGACGGCAACGACGACGGGAGCGGCGGCGTGACGACGACGAATGCTGGCGGAGGCGGAGCGGCGGCTGCGGCGACGCGGCTGCTGGCGACGGCGACGACGAGCGGCGGCTGCGCGTCGACGGCGACGACGACGGGAGCAGCGGCGCGACGACGGCGACTGCGCAACCACGGCGACGATGACCATGGATAGTGTCAGTGAGAGCTTCAATGGCATGAACAAGGCCAGTGCCATCGCCCACTGTCCAATGATCAGTGAACCACGTGATTTCTATCTATAATTTCAGTTTTTTTAGAATTTTCCGTTGTAATTTGCGAAAACGAAGGGACCATTAATTATGCCGAT]

[+] EMBL AK111269             [AACATCTGCCTCTTTCCTCTTTCCTCCCCTCCCCTTCCCTTCTCGGCGACGCCTTCGAGAGGATGGACGGCGAGACGCTCTCCTGGGCGGTGCCGGAGTGCGGCGACGAGTTCGCGCTCTGCTTCCTTGACGAGGCCGCCTGCGCCGCCGTCTCCGGCGCCATCTCCACGGTGACGGCCTCGCGGACAGGCTCGCCGAGCTGCGCGTGGCGAGGCAGGAGGGTGCCCCCGCCGGAGGTGACATCGCCGGCCGGCTTGCTGCGCTCAGCAGGCTCGCCGGAGCTATGCTTGCTGCGCTCAGCATAGGCCGGAGGCGACGATGAGCAGCGGCTGCGCGACGACGGGAGCGGCGGCGCGACGACGGCAACGACGACGGGAGCGGCGGCGTGACGACGACGAATGCTGGCGGAGGCGGAGCGGCGGCTGCGGCGACGCGGCTGCTGGCGACGGCGACGACGAGCGGCGGCTGCGCGTCGACGGCGACGACGACGGGAGCAGCGGCGCGACGACGGCGACTGCGCAACCACGGCGACGATGACCATGGATAGTGTCAGTGAGAGCTTCAATGGCATGAACAAGGCCAGTGCCATCGCCCACTGTCCAATGATCAGTGAACCACGTGATTTCTATCTATAATTTCAGTTTTTTTAGAATTTTCCGTTGTAATTTGCGAAAACGAAGGGACCATTAATTATGCCGAT]




>consensus_2759#0
AACATCTGCCTCTTTCCTCTTTCCTCCCCTCCCCTTCCCTTCTCGGCGACGCCTTCGAGA
GGATGGACGGCGAGACGCTCTCCTGGGCGGTGCCGGAGTGCGGCGACGAGTTCGCGCTCT
GCTTCCTTGACGAGGCCGCCTGCGCCGCCGTCTCCGGCGCCATCTCCACGGTGACGGCCT
CGCGGACAGGCTCGCCGAGCTGCGCGTGGCGAGGCAGGAGGGTGCCCCCGCCGGAGGTGA
CATCGCCGGCCGGCTTGCTGCGCTCAGCAGGCTCGCCGGAGCTATGCTTGCTGCGCTCAG
CATAGGCCGGAGGCGACGATGAGCAGCGGCTGCGCGACGACGGGAGCGGCGGCGCGACGA
CGGCAACGACGACGGGAGCGGCGGCGTGACGACGACGAATGCTGGCGGAGGCGGAGCGGC
GGCTGCGGCGACGCGGCTGCTGGCGACGGCGACGACGAGCGGCGGCTGCGCGTCGACGGC
GACGACGACGGGAGCAGCGGCGCGACGACGGCGACTGCGCAACCACGGCGACGATGACCA
TGGATAGTGTCAGTGAGAGCTTCAATGGCATGAACAAGGCCAGTGCCATCGCCCACTGTC
CAATGATCAGTGAACCACGTGATTTCTATCTATAATTTCAGTTTTTTTAGAATTTTCCGT
TGTAATTTGCGAAAACGAAGGGACCATTAATTATGCCGAT

consensusID : consensus_2759#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 599
fasta sequence

                              [TCTGTAAACATCTGCCTCTTTCCTCTTTCCTCCCCTCCCCTTCCCTTCCCGGCGACGCCTTCGAGAGGATGGACGGCGAGACGCTCTCCTGGGCGGAGCCGGAGTGCGGCGACGAGTTCGCGCTTTTCTTCCTCGACAAGGCCGCCTGCACCACCGTCTCCGGCGCCATCTCCACGGTGACGGCCTCGCGGACAGGCTCGCCGGGCTGCGCGTGGCGAGGCAGGAGGGTGCCCCCGCCGGAGGTGACATCGCCGGCCGGCTTGCTGCGCTCAGCATAGGCCGGAGGCGACGATGAGCAGCGGCTGCGCGACGACGGGAGCGGCGGCGACGGCGAATGCTGGCGGAGGCGGAGCGGCGGCTGCGGCGACGCGGCTGTTGGCGACGGCGACGACGACGACGACGGGAGCGGCGGCGCGACGACGGCGACGACGACCATGGAGAGTGTCAGTGAGAGCTTCGATGGCATGAACAAGGCCAGTGCCATCGCCCACTGTTTAATGATCAGTGAACCACGTGATTTCTATCTATAATTTCAGTTTTTTTAGAATTTTCCGTTGTAATTTGCGAAAATGAAGGGACCATTAATTATGCCGATTTGC]

[+] EMBL AK100581             [TCTGTAAACATCTGCCTCTTTCCTCTTTCCTCCCCTCCCCTTCCCTTCCCGGCGACGCCTTCGAGAGGATGGACGGCGAGACGCTCTCCTGGGCGGAGCCGGAGTGCGGCGACGAGTTCGCGCTTTTCTTCCTCGACAAGGCCGCCTGCACCACCGTCTCCGGCGCCATCTCCACGGTGACGGCCTCGCGGACAGGCTCGCCGGGCTGCGCGTGGCGAGGCAGGAGGGTGCCCCCGCCGGAGGTGACATCGCCGGCCGGCTTGCTGCGCTCAGCATAGGCCGGAGGCGACGATGAGCAGCGGCTGCGCGACGACGGGAGCGGCGGCGACGGCGAATGCTGGCGGAGGCGGAGCGGCGGCTGCGGCGACGCGGCTGTTGGCGACGGCGACGACGACGACGACGGGAGCGGCGGCGCGACGACGGCGACGACGACCATGGAGAGTGTCAGTGAGAGCTTCGATGGCATGAACAAGGCCAGTGCCATCGCCCACTGTTTAATGATCAGTGAACCACGTGATTTCTATCTATAATTTCAGTTTTTTTAGAATTTTCCGTTGTAATTTGCGAAAATGAAGGGACCATTAATTATGCCGATTTGC]




>consensus_2759#1
TCTGTAAACATCTGCCTCTTTCCTCTTTCCTCCCCTCCCCTTCCCTTCCCGGCGACGCCT
TCGAGAGGATGGACGGCGAGACGCTCTCCTGGGCGGAGCCGGAGTGCGGCGACGAGTTCG
CGCTTTTCTTCCTCGACAAGGCCGCCTGCACCACCGTCTCCGGCGCCATCTCCACGGTGA
CGGCCTCGCGGACAGGCTCGCCGGGCTGCGCGTGGCGAGGCAGGAGGGTGCCCCCGCCGG
AGGTGACATCGCCGGCCGGCTTGCTGCGCTCAGCATAGGCCGGAGGCGACGATGAGCAGC
GGCTGCGCGACGACGGGAGCGGCGGCGACGGCGAATGCTGGCGGAGGCGGAGCGGCGGCT
GCGGCGACGCGGCTGTTGGCGACGGCGACGACGACGACGACGGGAGCGGCGGCGCGACGA
CGGCGACGACGACCATGGAGAGTGTCAGTGAGAGCTTCGATGGCATGAACAAGGCCAGTG
CCATCGCCCACTGTTTAATGATCAGTGAACCACGTGATTTCTATCTATAATTTCAGTTTT
TTTAGAATTTTCCGTTGTAATTTGCGAAAATGAAGGGACCATTAATTATGCCGATTTGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2759#0      ------AACATCTGCCTCTTTCCTCTTTCCTCCCCTCCCCTTCCCTTCTCGGCGACGCCT 54
consensus_2759#1      TCTGTAAACATCTGCCTCTTTCCTCTTTCCTCCCCTCCCCTTCCCTTCCCGGCGACGCCT 60
                            ****************************************** ***********

consensus_2759#0      TCGAGAGGATGGACGGCGAGACGCTCTCCTGGGCGGTGCCGGAGTGCGGCGACGAGTTCG 114
consensus_2759#1      TCGAGAGGATGGACGGCGAGACGCTCTCCTGGGCGGAGCCGGAGTGCGGCGACGAGTTCG 120
                      ************************************ ***********************

consensus_2759#0      CGCTCTGCTTCCTTGACGAGGCCGCCTGCGCCGCCGTCTCCGGCGCCATCTCCACGGTGA 174
consensus_2759#1      CGCTTTTCTTCCTCGACAAGGCCGCCTGCACCACCGTCTCCGGCGCCATCTCCACGGTGA 180
                      **** * ****** *** *********** ** ***************************

consensus_2759#0      CGGCCTCGCGGACAGGCTCGCCGAGCTGCGCGTGGCGAGGCAGGAGGGTGCCCCCGCCGG 234
consensus_2759#1      CGGCCTCGCGGACAGGCTCGCCGGGCTGCGCGTGGCGAGGCAGGAGGGTGCCCCCGCCGG 240
                      *********************** ************************************

consensus_2759#0      AGGTGACATCGCCGGCCGGCTTGCTGCGCTCAGCAGGCTCGCCGGAGCTATGCTTGCTGC 294
consensus_2759#1      AGGTGACATCGCCGGCCGGCTTGCTGCGCTCAGCA------------------------- 275
                      ***********************************                         

consensus_2759#0      GCTCAGCATAGGCCGGAGGCGACGATGAGCAGCGGCTGCGCGACGACGGGAGCGGCGGCG 354
consensus_2759#1      --------TAGGCCGGAGGCGACGATGAGCAGCGGCTGCGCGACGACGGGAGCGGCGGCG 327
                              ****************************************************

consensus_2759#0      CGACGACGGCAACGACGACGGGAGCGGCGGCGTGACGACGACGAATGCTGGCGGAGGCGG 414
consensus_2759#1      -------------------------------------ACGGCGAATGCTGGCGGAGGCGG 350
                                                           *** *******************

consensus_2759#0      AGCGGCGGCTGCGGCGACGCGGCTGCTGGCGACGGCGACGACGAGCGGCGGCTGCGCGTC 474
consensus_2759#1      AGCGGCGGCTGCGGCGACGCGGCTGTTGGCGACGGCGACGACG----------------- 393
                      ************************* *****************                 

consensus_2759#0      GACGGCGACGACGACGGGAGCAGCGGCGCGACGACGGCGACTGCGCAACCACGGCGACGA 534
consensus_2759#1      -------ACGACGACGGGAGCGGCGGCGCGACGA-----------------CGGCGACGA 429
                             ************** ************                 *********

consensus_2759#0      TGACCATGGATAGTGTCAGTGAGAGCTTCAATGGCATGAACAAGGCCAGTGCCATCGCCC 594
consensus_2759#1      CGACCATGGAGAGTGTCAGTGAGAGCTTCGATGGCATGAACAAGGCCAGTGCCATCGCCC 489
                       ********* ****************** ******************************

consensus_2759#0      ACTGTCCAATGATCAGTGAACCACGTGATTTCTATCTATAATTTCAGTTTTTTTAGAATT 654
consensus_2759#1      ACTGTTTAATGATCAGTGAACCACGTGATTTCTATCTATAATTTCAGTTTTTTTAGAATT 549
                      *****  *****************************************************

consensus_2759#0      TTCCGTTGTAATTTGCGAAAACGAAGGGACCATTAATTATGCCGAT---- 700
consensus_2759#1      TTCCGTTGTAATTTGCGAAAATGAAGGGACCATTAATTATGCCGATTTGC 599
                      ********************* ************************