These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 450 fasta sequence [ATCACCNACATCGGGGTGAGGAAGGACGTCGTCAAGGTGGAGGTGGAGANCCTGTCGGCGCATCTTGGCTGGCGTCGCGCCAAAGCCGAGGAAGAAATGGCCATGAAAAAACAGCAGCCTTCATCACATGATACTNAGGTCAAGAAGAGTTTACTTCCTCTCAAGAGAAAACGTGACAATTTCTGCGAAATTATTACGAGCTGAAATTCTACTACAATTTGTATGGTTTTGTGTGGATAGGTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGTGTGCTTTGATTTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAATTGGGTGTGCCAAGGAGATTGGATTGCTGTACCACTATAGTATTATAGTCAGAAAATTTACTNTCTNTCAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU101523 [ATCACCNACATCGGGGTGAGGAAGGACGTCGTCAAGGTGGAGGTGGAGANCCTGTCGGCGCATCTTGGCTGGCGTCGCGCCAAAGCCGAGGAAGAAATGGCCATGAAAAAACAGCAGCCTTCATCACATGATACTNAGGTCAAGAAGAGTTTACTTCCTCTCAAGAGAAAACGTGACAATTTCTGCGAAATTATTACGAGCTGAAATTCTACTACAATTTGTATGGTTTTGTGTGGATAGGTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGTGTGCTTTGATTTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAATTGGGTGTGCCAAGGAGATTGGATTGCTGTACCACTATAGTATTATAGTCAGAAAATTTACTNTCTNTCAAAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_2767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 433 fasta sequence [GGAAGAAATGGCCATGAAAAAACAGCAGCCTTCATCACATGATACTAAGGTCAAGAAGAGTTTACTTCCTNTCAANAGAAAACGTGACAATTTNTGCGAAATTATTACGAGCTGAAATTNTACTACAATTTGTATGGTTTTGTGTGGATAGGTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGTGTGCTTTGATTTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAATTGGGTGTGCCAAGGAGATTGGATTGCTGTACCNCTATAGTATTATAGTCAGAAAATTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCATTTGAACCATCTAGTAGTATATATCTCTGTATTNTGATAAAAAAAAAAAAAAA] [+] EMBL AU197913 [GGAAGAAATGGCCATGAAAAAACAGCAGCCTTCATCACATGATACTAAGGTCAAGAAGAGTTTACTTCCTNTCAANAGAAAACGTGACAATTTNTGCGAAATTATTACGAGCTGAAATTNTACTACAATTTGTATGGTTTTGTGTGGATAGGTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGTGTGCTTTGATTTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAATTGGGTGTGCCAAGGAGATTGGATTGCTGTACCNCTATAGTATTATAGTCAGAAAATTTACTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCATTTGAACCATCTAGTAGTATATATCTCTGTATTNTGATAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2767#0 ATCACCNACATCGGGGTGAGGAAGGACGTCGTCAAGGTGGAGGTGGAGANCCTGTCGGCG 60 consensus_2767#1 ------------------------------------------------------------ consensus_2767#0 CATCTTGGCTGGCGTCGCGCCAAAGCCGAGGAAGAAATGGCCATGAAAAAACAGCAGCCT 120 consensus_2767#1 -----------------------------GGAAGAAATGGCCATGAAAAAACAGCAGCCT 31 ******************************* consensus_2767#0 TCATCACATGATACTNAGGTCAAGAAGAGTTTACTTCCTCTCAAGAGAAAACGTGACAAT 180 consensus_2767#1 TCATCACATGATACTAAGGTCAAGAAGAGTTTACTTCCTNTCAANAGAAAACGTGACAAT 91 *************** *********************** **** *************** consensus_2767#0 TTCTGCGAAATTATTACGAGCTGAAATTCTACTACAATTTGTATGGTTTTGTGTGGATAG 240 consensus_2767#1 TTNTGCGAAATTATTACGAGCTGAAATTNTACTACAATTTGTATGGTTTTGTGTGGATAG 151 ** ************************* ******************************* consensus_2767#0 GTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGTGTGCTTTGAT 300 consensus_2767#1 GTTTTGGAGTTAAAATGCAATAAGTCCTGGAAATATATGAAGCGTCAAGTGTGCTTTGAT 211 ************************************************************ consensus_2767#0 TTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAAT 360 consensus_2767#1 TTAATCAAGCATTCGCTGTCTCTGTGTGTGTGTGATAGATAGATCGATCTGATCATGAAT 271 ************************************************************ consensus_2767#0 TGGGTGTGCCAAGGAGATTGGATTGCTGTACCACTATAGTATTATAGTCAGAAAATTTAC 420 consensus_2767#1 TGGGTGTGCCAAGGAGATTGGATTGCTGTACCNCTATAGTATTATAGTCAGAAAATTTAC 331 ******************************** *************************** consensus_2767#0 TNTCTNTCAAAAAAAAAAAAAAAAAAAAAA------------------------------ 450 consensus_2767#1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTTCATTTGAACCATC 391 * *** ** consensus_2767#0 ------------------------------------------ consensus_2767#1 TAGTAGTATATATCTCTGTATTNTGATAAAAAAAAAAAAAAA 433 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||