cluster # 277

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Oryza sativa
cluster # 277 cluster # 277 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_277#0 length = 785 sequences # 1

consensus_277#1 length = 696 sequences # 1

consensusID : consensus_277#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 785
fasta sequence

                              [TCCACTGTCTCTCCTTCCCAAATCCTCCTCCCTCCCTCCTTCCCACTCAAAAAAAAAAAAAAAAAACCCGCATCCTCTCCTCCTCTCCAACTCCAATCCCCACCACCTCGCGTCACGCCGATCACCTCCTCCTCCCCTTCCGGTGGATCCCCGCGGCGGTTTCGACAAGTCCCGCGTCGCCGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAGGTGCGGTGTTGTTGCTGGTGAGAGGTTACTGGGTTTTGCCGCGAGCGAGGTGCGTAGCCGCTCGCCTGCGTTTCGCGCGCTGGGTCTTATCACTTTGGAGGCTTCTAGAAGAAGGTTTCTGGAGTTTTCTGGAAACTGCGCTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTTTGTGACACAGGCGTGATTCTGCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGTCTCGGCGGAAGGCATGGGCTAGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATAGAATTGTTGCCTGAGAGCAGCAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACGTCATTGTCACGAACTCTATCCCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATCCTCAGAACGCAGACAGCGGTAAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCATCATCGCTTGTTGAGATCGCGCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAATCCCCGGGTTGCATACCTCTGTCGAT]

[+] EMBL CB675793             [TCCACTGTCTCTCCTTCCCAAATCCTCCTCCCTCCCTCCTTCCCACTCAAAAAAAAAAAAAAAAAACCCGCATCCTCTCCTCCTCTCCAACTCCAATCCCCACCACCTCGCGTCACGCCGATCACCTCCTCCTCCCCTTCCGGTGGATCCCCGCGGCGGTTTCGACAAGTCCCGCGTCGCCGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAGGTGCGGTGTTGTTGCTGGTGAGAGGTTACTGGGTTTTGCCGCGAGCGAGGTGCGTAGCCGCTCGCCTGCGTTTCGCGCGCTGGGTCTTATCACTTTGGAGGCTTCTAGAAGAAGGTTTCTGGAGTTTTCTGGAAACTGCGCTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTTTGTGACACAGGCGTGATTCTGCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGTCTCGGCGGAAGGCATGGGCTAGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATAGAATTGTTGCCTGAGAGCAGCAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACGTCATTGTCACGAACTCTATCCCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATCCTCAGAACGCAGACAGCGGTAAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCATCATCGCTTGTTGAGATCGCGCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAATCCCCGGGTTGCATACCTCTGTCGAT]




>consensus_277#0
TCCACTGTCTCTCCTTCCCAAATCCTCCTCCCTCCCTCCTTCCCACTCAAAAAAAAAAAA
AAAAAACCCGCATCCTCTCCTCCTCTCCAACTCCAATCCCCACCACCTCGCGTCACGCCG
ATCACCTCCTCCTCCCCTTCCGGTGGATCCCCGCGGCGGTTTCGACAAGTCCCGCGTCGC
CGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAGGTGCGGTGTTGTTGCTGGTG
AGAGGTTACTGGGTTTTGCCGCGAGCGAGGTGCGTAGCCGCTCGCCTGCGTTTCGCGCGC
TGGGTCTTATCACTTTGGAGGCTTCTAGAAGAAGGTTTCTGGAGTTTTCTGGAAACTGCG
CTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTTTGTGACACAGGCGTGATTCT
GCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGTCTCGGCGGAAGGCATGGGCT
AGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATAGAATTGTTGCCTGAGAGCAG
CAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACGTCATTGTCACGAACTCTATC
CCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATCCTCAGAACGCAGACAGCGGT
AAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCATCATCGCTTGTTGAGATCGC
GCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAATCCCCGGGTTGCATACCTCTG
TCGAT

consensusID : consensus_277#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 696
fasta sequence

                              [GTCACCCCTTATACCTCCTCCTCCCCTTCCGGTGGATCCCCGCTGGCGCGTTTCGACAAGTCCCGCGTCGCCGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAGAAGGTTTCTGGAGTTTTCTGGAAACTGCGCTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTTTGTGACACAGGCGTGATTCTGCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGTCTCGGCGGAAGGCATGGGCTAGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATAGAATTGTTGCCTGAGAGCAGCAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACGTCATTGTCACGAACTCTATCCCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATCCTCAGAACGCATACAGCGGTAAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCATCATCGCTTGTTGAGATCGCGCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAATCCCCGGGTTGCATACCTCTGTCGATTCTATGCATTTGAAAAGGCTCACAGGTTAGATCCAACTTCAAGTGGCCGGGGTGTCCGGCAATTCAAGACGGCTCTTTTGCAACGGCTTGAAAGGGAGAATGAACCCACCTTGAGAGGAACGGCCCGCAAG]

[+] EMBL CB649545             [GTCACCCCTTATACCTCCTCCTCCCCTTCCGGTGGATCCCCGCTGGCGCGTTTCGACAAGTCCCGCGTCGCCGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAGAAGGTTTCTGGAGTTTTCTGGAAACTGCGCTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTTTGTGACACAGGCGTGATTCTGCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGTCTCGGCGGAAGGCATGGGCTAGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATAGAATTGTTGCCTGAGAGCAGCAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACGTCATTGTCACGAACTCTATCCCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATCCTCAGAACGCATACAGCGGTAAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCATCATCGCTTGTTGAGATCGCGCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAATCCCCGGGTTGCATACCTCTGTCGATTCTATGCATTTGAAAAGGCTCACAGGTTAGATCCAACTTCAAGTGGCCGGGGTGTCCGGCAATTCAAGACGGCTCTTTTGCAACGGCTTGAAAGGGAGAATGAACCCACCTTGAGAGGAACGGCCCGCAAG]




>consensus_277#1
GTCACCCCTTATACCTCCTCCTCCCCTTCCGGTGGATCCCCGCTGGCGCGTTTCGACAAG
TCCCGCGTCGCCGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAGAAGGTTTCT
GGAGTTTTCTGGAAACTGCGCTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTT
TGTGACACAGGCGTGATTCTGCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGT
CTCGGCGGAAGGCATGGGCTAGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATA
GAATTGTTGCCTGAGAGCAGCAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACG
TCATTGTCACGAACTCTATCCCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATC
CTCAGAACGCATACAGCGGTAAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCA
TCATCGCTTGTTGAGATCGCGCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAAT
CCCCGGGTTGCATACCTCTGTCGATTCTATGCATTTGAAAAGGCTCACAGGTTAGATCCA
ACTTCAAGTGGCCGGGGTGTCCGGCAATTCAAGACGGCTCTTTTGCAACGGCTTGAAAGG
GAGAATGAACCCACCTTGAGAGGAACGGCCCGCAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_277#0      TCCACTGTCTCTCCTTCCCAAATCCTCCTCCCTCCCTCCTTCCCACTCAAAAAAAAAAAA 60
consensus_277#1      ------------------------------------------------------------
                                                                                 

consensus_277#0      AAAAAACCCGCATCCTCTCCTCCTCTCCAACTCCAATCCCCACCACCTCGCGTCACGCCG 120
consensus_277#1      ---------------------------------------------------GTCACCCCT 9
                                                                        ***** ** 

consensus_277#0      ATCACCTCCTCCTCCCCTTCCGGTGGATCCCCGC-GGCG-GTTTCGACAAGTCCCGCGTC 178
consensus_277#1      TATACCTCCTCCTCCCCTTCCGGTGGATCCCCGCTGGCGCGTTTCGACAAGTCCCGCGTC 69
                        ******************************* **** ********************

consensus_277#0      GCCGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAGGTGCGGTGTTGTTGCTGG 238
consensus_277#1      GCCGTCCGGTGTGGAGCGCCGTCGCGGCCGGTGGCCTGTAAG------------------ 111
                     ******************************************                  

consensus_277#0      TGAGAGGTTACTGGGTTTTGCCGCGAGCGAGGTGCGTAGCCGCTCGCCTGCGTTTCGCGC 298
consensus_277#1      ------------------------------------------------------------
                                                                                 

consensus_277#0      GCTGGGTCTTATCACTTTGGAGGCTTCTAGAAGAAGGTTTCTGGAGTTTTCTGGAAACTG 358
consensus_277#1      ---------------------------------AAGGTTTCTGGAGTTTTCTGGAAACTG 138
                                                      ***************************

consensus_277#0      CGCTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTTTGTGACACAGGCGTGATT 418
consensus_277#1      CGCTGTGATGCCCCCGCGACTGCGAGAAAGTGTCTCCAAGTTTGTGACACAGGCGTGATT 198
                     ************************************************************

consensus_277#0      CTGCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGTCTCGGCGGAAGGCATGGG 478
consensus_277#1      CTGCTTGTAGGCTGGGGTTTTGCATTTTGGAGCCGCGGTGGTCTCGGCGGAAGGCATGGG 258
                     ************************************************************

consensus_277#0      CTAGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATAGAATTGTTGCCTGAGAGC 538
consensus_277#1      CTAGGCCCCCAGCACGGTTTCCAGGTGATTGATTGGTGGATAGAATTGTTGCCTGAGAGC 318
                     ************************************************************

consensus_277#0      AGCAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACGTCATTGTCACGAACTCTA 598
consensus_277#1      AGCAAGGTTTGGGCGTGGTGACTGGAAGCAATCACGATGACGTCATTGTCACGAACTCTA 378
                     ************************************************************

consensus_277#0      TCCCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATCCTCAGAACGCAGACAGCG 658
consensus_277#1      TCCCGGGGAGGGCCAATGCAGCCACCGGGGCAGCGGCGCATCCTCAGAACGCATACAGCG 438
                     ***************************************************** ******

consensus_277#0      GTAAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCATCATCGCTTGTTGAGATC 718
consensus_277#1      GTAAACCTGGGCGAGCAAATCTTTGACAGTGAGGTGGTGCCATCATCGCTTGTTGAGATC 498
                     ************************************************************

consensus_277#0      GCGCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAATCCCCGGGTTGCATACCTC 778
consensus_277#1      GCGCCCATCCTCCGTGTTGCCAATGAGGTCGAGGCGTCCAATCCCCGGGTTGCATACCTC 558
                     ************************************************************

consensus_277#0      TGTCGAT----------------------------------------------------- 785
consensus_277#1      TGTCGATTCTATGCATTTGAAAAGGCTCACAGGTTAGATCCAACTTCAAGTGGCCGGGGT 618
                     *******                                                     

consensus_277#0      ------------------------------------------------------------
consensus_277#1      GTCCGGCAATTCAAGACGGCTCTTTTGCAACGGCTTGAAAGGGAGAATGAACCCACCTTG 678
                                                                                 

consensus_277#0      ------------------
consensus_277#1      AGAGGAACGGCCCGCAAG 696