cluster # 2778

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Oryza sativa
cluster # 2778 cluster # 2778 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2778#0 length = 608 sequences # 1

consensus_2778#1 length = 471 sequences # 1

consensusID : consensus_2778#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 608
fasta sequence

                              [GCGGCGCGCTGGGACGTGGCATCTCGGGGCCGGATACCGGGCTCCCCCGGGCCGGGCCGCGGCGGGAGGCCGCGGGCCCGCGCCGGGCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGGACATAATGCCGCTGCTCCCGTCCCCGGGGCCCGACTCCGACGGCTCCGCCGAGGCGCCGTCCGACGTCATGCCCACCATCCCCTCCAGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCGCTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCGACGACGACGGCGGCGGCGGCGGCGTGGGCGCCTCCCCGTGGCCGTGGGGCCTAGTGGCCATGTGGTTGGTGTAGTGGGCGAGTGGTGCAAGCGACAGCAGCTGCAGCTGCAGTTGCAGCCTTCGGGTTCAGTCGTGCAGGACAAAAAGTTGGCCGTTGGTTGGTCGGTTGGCTTTGCATTCTTGGCAGCCAACATTGTGAAGAAATTGTTGCTTCATTTCACTAAATTTTTTTAGCTTTCGATCTCCTGTAACTTTTTCTGTCAAGTTTACGTAATTGTTTCTGGCTGGGGGCGGCT]

[+] EMBL CB967483             [GCGGCGCGCTGGGACGTGGCATCTCGGGGCCGGATACCGGGCTCCCCCGGGCCGGGCCGCGGCGGGAGGCCGCGGGCCCGCGCCGGGCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGGACATAATGCCGCTGCTCCCGTCCCCGGGGCCCGACTCCGACGGCTCCGCCGAGGCGCCGTCCGACGTCATGCCCACCATCCCCTCCAGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCGCTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCGACGACGACGGCGGCGGCGGCGGCGTGGGCGCCTCCCCGTGGCCGTGGGGCCTAGTGGCCATGTGGTTGGTGTAGTGGGCGAGTGGTGCAAGCGACAGCAGCTGCAGCTGCAGTTGCAGCCTTCGGGTTCAGTCGTGCAGGACAAAAAGTTGGCCGTTGGTTGGTCGGTTGGCTTTGCATTCTTGGCAGCCAACATTGTGAAGAAATTGTTGCTTCATTTCACTAAATTTTTTTAGCTTTCGATCTCCTGTAACTTTTTCTGTCAAGTTTACGTAATTGTTTCTGGCTGGGGGCGGCT]




>consensus_2778#0
GCGGCGCGCTGGGACGTGGCATCTCGGGGCCGGATACCGGGCTCCCCCGGGCCGGGCCGC
GGCGGGAGGCCGCGGGCCCGCGCCGGGCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGG
ACATAATGCCGCTGCTCCCGTCCCCGGGGCCCGACTCCGACGGCTCCGCCGAGGCGCCGT
CCGACGTCATGCCCACCATCCCCTCCAGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGC
CGGACTCCGCGCTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGC
CGCCGCCGTCGACGACGACGGCGGCGGCGGCGGCGTGGGCGCCTCCCCGTGGCCGTGGGG
CCTAGTGGCCATGTGGTTGGTGTAGTGGGCGAGTGGTGCAAGCGACAGCAGCTGCAGCTG
CAGTTGCAGCCTTCGGGTTCAGTCGTGCAGGACAAAAAGTTGGCCGTTGGTTGGTCGGTT
GGCTTTGCATTCTTGGCAGCCAACATTGTGAAGAAATTGTTGCTTCATTTCACTAAATTT
TTTTAGCTTTCGATCTCCTGTAACTTTTTCTGTCAAGTTTACGTAATTGTTTCTGGCTGG
GGGCGGCT

consensusID : consensus_2778#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 471
fasta sequence

                              [GCTAAATTACCTCACTAACGGGACACTAGCGCGGCGCGCTGCGGACGTGGCCATCTCCGCGGCGCCGGAGTACCCGCGGCTCCCCACCGGGCCGGGCCACGGCGGCGGGAGGCACGCGGCGCCCGCGCCCGCGGCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGGACATACTGCCGCTGCTCCCGTCCCCGGGGCCCGCCTCCGACGGCTCCGCCGACGGCGCCGTCCGCCGTCATGCCCCCCACTCCCCTCCCGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCGCTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCGACGACGACGGCGGCGGCGGCGGCGTGGGCGCTCCCCGTGGCCGAGGGGCTAGATGGCCATGTGGCTTGGTGTAGATGGGCGAGTGGTGCAAGCGACAGCAGCATGCAGCAG]

[+] EMBL CB964710             [GCTAAATTACCTCACTAACGGGACACTAGCGCGGCGCGCTGCGGACGTGGCCATCTCCGCGGCGCCGGAGTACCCGCGGCTCCCCACCGGGCCGGGCCACGGCGGCGGGAGGCACGCGGCGCCCGCGCCCGCGGCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGGACATACTGCCGCTGCTCCCGTCCCCGGGGCCCGCCTCCGACGGCTCCGCCGACGGCGCCGTCCGCCGTCATGCCCCCCACTCCCCTCCCGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCGCTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCGACGACGACGGCGGCGGCGGCGGCGTGGGCGCTCCCCGTGGCCGAGGGGCTAGATGGCCATGTGGCTTGGTGTAGATGGGCGAGTGGTGCAAGCGACAGCAGCATGCAGCAG]




>consensus_2778#1
GCTAAATTACCTCACTAACGGGACACTAGCGCGGCGCGCTGCGGACGTGGCCATCTCCGC
GGCGCCGGAGTACCCGCGGCTCCCCACCGGGCCGGGCCACGGCGGCGGGAGGCACGCGGC
GCCCGCGCCCGCGGCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGGACATACTGCCGCT
GCTCCCGTCCCCGGGGCCCGCCTCCGACGGCTCCGCCGACGGCGCCGTCCGCCGTCATGC
CCCCCACTCCCCTCCCGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCG
CTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCG
ACGACGACGGCGGCGGCGGCGGCGTGGGCGCTCCCCGTGGCCGAGGGGCTAGATGGCCAT
GTGGCTTGGTGTAGATGGGCGAGTGGTGCAAGCGACAGCAGCATGCAGCAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2778#0      ------------------------------GCGGCGCGCTG-GGACGTGGC-ATCTC--- 25
consensus_2778#1      GCTAAATTACCTCACTAACGGGACACTAGCGCGGCGCGCTGCGGACGTGGCCATCTCCGC 60
                                                    *********** ********* *****   

consensus_2778#0      GGGGCCGGA-TACCGG--GCTCCCC--CGGGCCGGGCC---GCGGCGGGAGGC-CGCGG- 75
consensus_2778#1      GGCGCCGGAGTACCCGCGGCTCCCCACCGGGCCGGGCCACGGCGGCGGGAGGCACGCGGC 120
                      ** ****** **** *  *******  ***********   ************ ***** 

consensus_2778#0      GCCCGCGCCGG--GCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGGACATAATGCCGCT 133
consensus_2778#1      GCCCGCGCCCGCGGCGGTCCTCCCGCCGGCGCCGGCGCTCTCGCCGGACATACTGCCGCT 180
                      ********* *  *************************************** *******

consensus_2778#0      GCTCCCGTCCCCGGGGCCCGACTCCGACGGCTCCGCCGA-GGCGCCGTCCGACGTCATGC 192
consensus_2778#1      GCTCCCGTCCCCGGGGCCCGCCTCCGACGGCTCCGCCGACGGCGCCGTCCGCCGTCATGC 240
                      ******************** ****************** *********** ********

consensus_2778#0      CCACCA-TCCCCTCCAGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCG 251
consensus_2778#1      CCCCCACTCCCCTCCCGCCCGAGCCCGCCCAACCCCGACGCGCTCTTGCCGGACTCCGCG 300
                      ** *** ******** ********************************************

consensus_2778#0      CTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCG 311
consensus_2778#1      CTCGCCCCGTTCGGCTCCGCGCCCGCCGTCGCCGCCCAGTCCCGCGCGCCGCCGCCGTCG 360
                      ************************************************************

consensus_2778#0      ACGACGACGGCGGCGGCGGCGGCGTGGGCGCCTCCCCGTGGCCGTGGGGCCTAGTGGCCA 371
consensus_2778#1      ACGACGACGGCGGCGGCGGCGGCGTGGGCGC-TCCCCGTGGCCGAGGGGCTAGATGGCCA 419
                      ******************************* ************ *****    ******

consensus_2778#0      TGTGG-TTGGTGTAG-TGGGCGAGTGGTGCAAGCGACAGCAGC-TGCAGCTGCAGTTGCA 428
consensus_2778#1      TGTGGCTTGGTGTAGATGGGCGAGTGGTGCAAGCGACAGCAGCATGCAGCAG-------- 471
                      ***** ********* *************************** ****** *        

consensus_2778#0      GCCTTCGGGTTCAGTCGTGCAGGACAAAAAGTTGGCCGTTGGTTGGTCGGTTGGCTTTGC 488
consensus_2778#1      ------------------------------------------------------------
                                                                                  

consensus_2778#0      ATTCTTGGCAGCCAACATTGTGAAGAAATTGTTGCTTCATTTCACTAAATTTTTTTAGCT 548
consensus_2778#1      ------------------------------------------------------------
                                                                                  

consensus_2778#0      TTCGATCTCCTGTAACTTTTTCTGTCAAGTTTACGTAATTGTTTCTGGCTGGGGGCGGCT 608
consensus_2778#1      ------------------------------------------------------------