Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 2780 cluster # 2780       Sequences # 2       consensus # 1


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_2780#0 length = 1522 sequences # 2  

consensusID : consensus_2780#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1522
fasta sequence
                              [CTCCACGGGGCATCAAAACCACGGCGAGGCCACGAGTTCGCGGAGAGGAAGCCGACGCAATCGAACTCCGGCGAAACTGTGGTCTCCGGCCGCCATGGACGGAAGAAACTCAGGAGACGCGCTGCCGCGGGAGCGGTGGAACGACATCCCGGCGGACATGCTGGGCCTCGTGCTCCGCGTCATCCCGTGCGCCGCTGACCGCGCCAGGGTGCGCTCCGTCTGCCGCTCGTGGCGCGCCGCCGCGGCCATCCAGCGCCCGCCCCCGCCACTCCCGGTGCTCGTGTTCTCCCGGTTCAGCTTCGCAAGCCTCTCCAGATTATCGCCCGCCATGGCGTTCACCAAACCCCGCCGCTTTTTTTTTCACAAGGACGTGACCATCCGCTGGGTGGGATCGTTCGACGAGTGGCTCGTCGGGACGAAACCCAGCAGGGAATGCAAGGATGCCGACGGCCATTGTTTCTTGCTGAATCTCATGTCCCGGAAGAAGATTCAACTACCGAGGCCATGTGCCTTGCATTTCTTCGATTACTTCTGCAAGACTCTCCCCATCGTCAACACCTCAGGTTGGGTCGACATTATTATCCATGACCGGGAGTACTCGATGTGCTTCAGAAAGGTGGTCTTATCTGCTTCACCTGCCTCTGACTCAATGTGCATCGTGGCTGCCATTTCTAGTCGCACCCTTGCTCTCTGGCACCCTGGGATGAGATCATGGTGCGTTTGCAGAAGCTTTGGCATCGATGGTTCAGCTGATATTGCCTTCTACCAGGGGAGGATCTACATGGCGATGGTCTCCACATACTTTCCACATATCCTGTCCATCCTGTTCTTTCAGCTTGAAGAGGTCAATGGCAGAGTTATGGTTTCGTATGTTGAGCAGTGTGTTACAGAGACGCTGCCCCCAGTCGAGGGTTGTGTAGTGAATGAATTCTACATTGTTGAATGGCGTGGGAAACTATTGCTGATCGTTATGTATGCTGAACATGTCTGGCTAGACACTGAGAAAATTGGGATATATGCTCTGGACTTCAGCACAAACCCTCACAGCTTGACTGAGATAAACAACTTGGATGGTGATTGTCTCTTCATTAGTTTGCGCAGCAGCAAGTCCTTTCCTGCTTGTCAGTATGATGGAGCCAAAGGTGATTTTGTCTACTTCGTTAGCGGCTATTGGCAACATGCTACTGGTGTCCATCATTCTTTTGATGTACTTGTGTACAATGTGAGAGATGCTACAACGACACGATTATCTGTTTCTGCACCTGAGGACAACTCTGGCCCGTTCACGAACAACCTCTTGTGGTTATTTCCTCCGAGATGAATGCTACTGAGAAGATCCAATCAGATCATATCATATCAATAGTATGACAGTGCTAATGTGGCCTCCATTGACCGAAATGTAAACCAGTGATGGTGTTCTTTTCCTCTTCATGACCGAAATATTGTGTTGTTGGTTGTTCTCAAATAACCCTGAGTACATGTCACAGATCTACTTTGATTGCAATATACTTATCATGCCCTG]

[+] EMBL AK101215             [CTCCACGGGGCATCAAAACCACGGCGAGGCCACGAGTTCGCGGAGAGGAAGCCGACGCAATCGAACTCCGGCGAAACTGTGGTCTCCGGCCGCCATGGACGGAAGAAACTCAGGAGACGCGCTGCCGCGGGAGCGGTGGAACGACATCCCGGCGGACATGCTGGGCCTCGTGCTCCGCGTCATCCCGTGCGCCGCTGACCGCGCCAGGGTGCGCTCCGTCTGCCGCTCGTGGCGCGCCGCCGCGGCCATCCAGCGCCCGCCCCCGCCACTCCCGGTGCTCGTGTTCTCCCGGTTCAGCTTCGCAAGCCTCTCCAGATTATCGCCCGCCATGGCGTTCACCAAACCCCGCCGCTTTTTTTTTCACAAGGACGTGACCATCCGCTGGGTGGGATCGTTCGACGAGTGGCTCGTCGGGACGAAACCCAGCAGGGAATGCAAGGATGCCGACGGCCATTGTTTCTTGCTGAATCTCATGTCCCGGAAGAAGATTCAACTACCGAGGCCATGTGCCTTGCATTTCTTCGATTACTTCTGCAAGACTCTCCCCATCGTCAACACCTCAGGTTGGGTCGACATTATTATCCATGACCGGGAGTACTCGATGTGCTTCAGAAAGGTGGTCTTATCTGCTTCACCTGCCTCTGACTCAATGTGCATCGTGGCTGCCATTTCTAGTCGCACCCTTGCTCTCTGGCACCCTGGGATGAGATCATGGTGCGTTTGCAGAAGCTTTGGCATCGATGGTTCAGCTGATATTGCCTTCTACCAGGGGAGGATCTACATGGCGATGGTCTCCACATACTTTCCACATATCCTGTCCATCCTGTTCTTTCAGCTTGAAGAGGTCAATGGCAGAGTTATGGTTTCGTATGTTGAGCAGTGTGTTACAGAGACGCTGCCCCCAGTCGAGGGTTGTGTAGTGAATGAATTCTACATTGTTGAATGGCGTGGGAAACTATTGCTGATCGTTATGTATGCTGAACATGTCTGGCTAGACACTGAGAAAATTGGGATATATGCTCTGGACTTCAGCACAAACCCTCACAGCTTGACTGAGATAAACAACTTGGATGGTGATTGTCTCTTCATTAGTTTGCGCAGCAGCAAGTCCTTTCCTGCTTGTCAGTATGATGGAGCCAAAGGTGATTTTGTCTACTTCGTTAGCGGCTATTGGCAACATGCTACTGGTGTCCATCATTCTTTTGATGTACTTGTGTACAATGTGAGAGATGCTACAACGACACGATTATCTGTTTCTGCACCTGAGGACAACTCTGGCCCGTTCACGAACAACCTCTTGTGGTTATTTCCTCCGAGATGAATGCTACTGAGAAGATCCAATCAGATCATATCATATCAATAGTATGACAGTGCTAATGTGGCCTCCATTGACCGAAATGTAAACCAGTGATGGTGTTCTTTTCCTCTTCATGACCGAAATATTGTGTTGTTGGTTGTTCTCAAATAACCCTGAGTACATGTCACAGATCTACTTTGATTGCAATATACTTATCATGCCCT ]
[+] EMBL AK107103             [       GGGCATCAAAACCACGGCGAGGCCACGAGTTCGCGGAGAGGAAGCCGACGCAATCGAACTCCGGCGAAACTGTGGTCTCCGGCCGCCATGGACGGAAGAAACTCAGGAGACGCGCTGCCGCGGGAGCGGTGGAACGACATCCCGGCGGACATGCTGGGCCTCGTGCTCCGCGTCATCCCGTGCGCCGCTGACCGCGCCAGGGTGCGCTCCGTCTGCCGCTCGTGGCGCGCCGCCGCGGCCATCCAGCGCCCGCCCCCGCCACTCCCGGTGCTCGTGTTCTCCCGGTTCAGCTTCGCAAGCCTCTCCAGATTATCGCCCGCCATGGCGTTCACCAAACCCCGCCGCTTTTTTTTTCACAAGGACGTGACCATCCGCTGGGTGGGATCGTTCGACGAGTGGCTCGTCGGGACGAAACCCAGCAGGGAATGCAAGGATGCCGACGGCCATTGTTTCTTGCTGAATCTCATGTCCCGGAAGAAGATTCAACTACCGAGGCCATGTGCCTTGCATTTCTTCGATTACTTCTGCAAGACTCTCCCCATCGTCAACACCTCAGGTTGGGTCGACATTATTATCCATGACCGGGAGTACTCGATGTGCTTCAGAAAGGTGGTCTTATCTGCTTCACCTGCCTCTGACTCAATGTGCATCGTGGCTGCCATTTCTAGTCGCACCCTTGCTCTCTGGCACCCTGGGATGAGATCATGGTGCGTTTGCAGAAGCTTTGGCATCGATGGTTCAGCTGATATTGCCTTCTACCAGGGGAGGATCTACATGGCGATGGTCTCCACATACTTTCCACATATCCTGTCCATCCTGTTCTTTCAGCTTGAAGAGGTCAATGGCAGAGTTATGGTTTCGTATGTTGAGCAGTGTGTTACAGAGACGCTGCCCCCAGTCGAGGGTTGTGTAGTGAATGAATTCTACATTGTTGAATGGCGTGGGAAACTATTGCTGATCGTTATGTATGCTGAACATGTCTGGCTAGACACTGAGAAAATTGGGATATATGCTCTGGACTTCAGCACAAACCCTCACAGCTTGACTGAGATAAACAACTTGGATGGTGATTGTCTCTTCATTAGTTTGCGCAGCAGCAAGTCCTTTCCTGCTTGTCAGTATGATGGAGCCAAAGGTGATTTTGTCTACTTCGTTAGCGGCTATTGGCAACATGCTACTGGTGTCCATCATTCTTTTGATGTACTTGTGTACAATGTGAGAGATGCTACAACGACACGATTATCTGTTTCTGCACCTGAGGACAACTCTGGCCCGTTCACGAACAACCTCTTGTGGTTATTTCCTCCGAGATGAATGCTACTGAGAAGATCCAATCAGATCATATCATATCAATAGTATGACAGTGCTAATGTGGCCTCCATTGACCGAAATGTAAACCAGTGATGGTGTTCTTTTCCTCTTCATGACCGAAATATTGTGTTGTTGGTTGTTCTCAAATAACCCTGAGTACATGTCACAGATCTACTTTGATTGCAATATACTTATCATGCCCTG]


>consensus_2780#0 CTCCACGGGGCATCAAAACCACGGCGAGGCCACGAGTTCGCGGAGAGGAAGCCGACGCAA TCGAACTCCGGCGAAACTGTGGTCTCCGGCCGCCATGGACGGAAGAAACTCAGGAGACGC GCTGCCGCGGGAGCGGTGGAACGACATCCCGGCGGACATGCTGGGCCTCGTGCTCCGCGT CATCCCGTGCGCCGCTGACCGCGCCAGGGTGCGCTCCGTCTGCCGCTCGTGGCGCGCCGC CGCGGCCATCCAGCGCCCGCCCCCGCCACTCCCGGTGCTCGTGTTCTCCCGGTTCAGCTT CGCAAGCCTCTCCAGATTATCGCCCGCCATGGCGTTCACCAAACCCCGCCGCTTTTTTTT TCACAAGGACGTGACCATCCGCTGGGTGGGATCGTTCGACGAGTGGCTCGTCGGGACGAA ACCCAGCAGGGAATGCAAGGATGCCGACGGCCATTGTTTCTTGCTGAATCTCATGTCCCG GAAGAAGATTCAACTACCGAGGCCATGTGCCTTGCATTTCTTCGATTACTTCTGCAAGAC TCTCCCCATCGTCAACACCTCAGGTTGGGTCGACATTATTATCCATGACCGGGAGTACTC GATGTGCTTCAGAAAGGTGGTCTTATCTGCTTCACCTGCCTCTGACTCAATGTGCATCGT GGCTGCCATTTCTAGTCGCACCCTTGCTCTCTGGCACCCTGGGATGAGATCATGGTGCGT TTGCAGAAGCTTTGGCATCGATGGTTCAGCTGATATTGCCTTCTACCAGGGGAGGATCTA CATGGCGATGGTCTCCACATACTTTCCACATATCCTGTCCATCCTGTTCTTTCAGCTTGA AGAGGTCAATGGCAGAGTTATGGTTTCGTATGTTGAGCAGTGTGTTACAGAGACGCTGCC CCCAGTCGAGGGTTGTGTAGTGAATGAATTCTACATTGTTGAATGGCGTGGGAAACTATT GCTGATCGTTATGTATGCTGAACATGTCTGGCTAGACACTGAGAAAATTGGGATATATGC TCTGGACTTCAGCACAAACCCTCACAGCTTGACTGAGATAAACAACTTGGATGGTGATTG TCTCTTCATTAGTTTGCGCAGCAGCAAGTCCTTTCCTGCTTGTCAGTATGATGGAGCCAA AGGTGATTTTGTCTACTTCGTTAGCGGCTATTGGCAACATGCTACTGGTGTCCATCATTC TTTTGATGTACTTGTGTACAATGTGAGAGATGCTACAACGACACGATTATCTGTTTCTGC ACCTGAGGACAACTCTGGCCCGTTCACGAACAACCTCTTGTGGTTATTTCCTCCGAGATG AATGCTACTGAGAAGATCCAATCAGATCATATCATATCAATAGTATGACAGTGCTAATGT GGCCTCCATTGACCGAAATGTAAACCAGTGATGGTGTTCTTTTCCTCTTCATGACCGAAA TATTGTGTTGTTGGTTGTTCTCAAATAACCCTGAGTACATGTCACAGATCTACTTTGATT GCAATATACTTATCATGCCCTG



clustalw multiple alignements is not computed in this case


Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)