These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2805#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 501 fasta sequence [ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTAACGAACCAACTATACATTCATCTACAGGGTTACAAATGTATGACAATTCCAGCCTTTCGGCTTAGCCATTTCGTCGAACAGTTGGTGAGCGAGATGAATCAGCATCACAAACTAGCTCTACGCTCGCTTAACTGGTCACAGGTTCTGGATTTGGGATGAAGTAGAGTTGAGTACTTACTGGAAGCTAACTGATTCGCATACGAAGAAGATGAAAAAGAAAAAAAGAATCTCACGGAAGCAAGCAAAGGATGGAAGGAACAGGACAATGAATTGATTATTACCTGGATGAACACAAGGTGGCCGGGTTAGTGATGGCGCACGGGAGGCGATTCGTCGACGAGGAGAAGAGGAAATAGGCGAGCCTCCGGAACAACGAGGCGGGGCGGAGGAGGACGAATCTCGCCACAGACTATTTATAGATCCGACGGCTCACGTTAGCATTAAATGG] [+] EMBL CB965146 [ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTAACGAACCAACTATACATTCATCTACAGGGTTACAAATGTATGACAATTCCAGCCTTTCGGCTTAGCCATTTCGTCGAACAGTTGGTGAGCGAGATGAATCAGCATCACAAACTAGCTCTACGCTCGCTTAACTGGTCACAGGTTCTGGATTTGGGATGAAGTAGAGTTGAGTACTTACTGGAAGCTAACTGATTCGCATACGAAGAAGATGAAAAAGAAAAAAAGAATCTCACGGAAGCAAGCAAAGGATGGAAGGAACAGGACAATGAATTGATTATTACCTGGATGAACACAAGGTGGCCGGGTTAGTGATGGCGCACGGGAGGCGATTCGTCGACGAGGAGAAGAGGAAATAGGCGAGCCTCCGGAACAACGAGGCGGGGCGGAGGAGGACGAATCTCGCCACAGACTATTTATAGATCCGACGGCTCACGTTAGCATTAAATGG] consensusID : consensus_2805#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 336 fasta sequence [ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTCACACGAACCCAACTATACATTCATCTACAGGGTTACAAATGTATGACCAATTCCCAGCCTTTCGGCTTAGCCCATTTCGTCGAACAGTGGGTGCAGCGAGATGAATCAGCATCCACAAACTCACTCTACGCCTCGCTTACCTGGTCCCCGGTTCTGGCATTTGGGCATGAAGTCACAGTGCAGTACTTACTGGCCAGCTCACTGCATTCGCCATCACGCACGCAACATGCAACAAACAACAAAAGACATCTCCCGGCCAGCCAAGCCAAAGGCATGGAAGGCA] [+] EMBL CB966206 [ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTCACACGAACCCAACTATACATTCATCTACAGGGTTACAAATGTATGACCAATTCCCAGCCTTTCGGCTTAGCCCATTTCGTCGAACAGTGGGTGCAGCGAGATGAATCAGCATCCACAAACTCACTCTACGCCTCGCTTACCTGGTCCCCGGTTCTGGCATTTGGGCATGAAGTCACAGTGCAGTACTTACTGGCCAGCTCACTGCATTCGCCATCACGCACGCAACATGCAACAAACAACAAAAGACATCTCCCGGCCAGCCAAGCCAAAGGCATGGAAGGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2805#0 ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTAACG---A 57 consensus_2805#1 ATCAGATCACACCGCGACGCACGACGCAATCATCATATTGATCTTCTGAGGTCACACGAA 60 **************************************************** ** * consensus_2805#0 ACCAACTATACATTCATCTACAGGGTTACAAATGTATGACAA--TTCCAGCCTTTCGGCT 115 consensus_2805#1 CCCAACTATACATTCATCTACAGGGTTACAAATGTATGACCAATTCCCAGCCTTTCGGCT 120 *************************************** * * ************** consensus_2805#0 TAGCC-ATTTCGTCGAACAGTTGGTG-AGCGAGATGAATCAGCATC-ACAAACTAGCTCT 172 consensus_2805#1 TAGCCCATTTCGTCGAACAGTGGGTGCAGCGAGATGAATCAGCATCCACAAACTCACTCT 180 ***** *************** **** ******************* ******* **** consensus_2805#0 ACGC-TCGCTTAACTGGTCACAGGTTCTGG-ATTTGGG-ATGAAGT-AGAGTTGAGTACT 228 consensus_2805#1 ACGCCTCGCTTACCTGGTCCCCGGTTCTGGCATTTGGGCATGAAGTCACAGTGCAGTACT 240 **** ******* ****** * ******** ******* ******* * *** ****** consensus_2805#0 TACTGGA-AGCTAACTG-ATTCGC------ATACGAAGAAGATGAAAAAGAAAAAAAGA- 279 consensus_2805#1 TACTGGCCAGCTCACTGCATTCGCCATCACGCACGCAACATGCAACAAACAACAAAAGAC 300 ****** **** **** ****** *** * * * *** ** ****** consensus_2805#0 ATCTCACGG--AAGCAAGCAAAGG--ATGGAAGGAACAGGACAATGAATTGATTATTACC 335 consensus_2805#1 ATCTCCCGGCCAGCCAAGCCAAAGGCATGGAAGGCA------------------------ 336 ***** *** * ***** ** * ******** * consensus_2805#0 TGGATGAACACAAGGTGGCCGGGTTAGTGATGGCGCACGGGAGGCGATTCGTCGACGAGG 395 consensus_2805#1 ------------------------------------------------------------ consensus_2805#0 AGAAGAGGAAATAGGCGAGCCTCCGGAACAACGAGGCGGGGCGGAGGAGGACGAATCTCG 455 consensus_2805#1 ------------------------------------------------------------ consensus_2805#0 CCACAGACTATTTATAGATCCGACGGCTCACGTTAGCATTAAATGG 501 consensus_2805#1 ---------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||