These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2817#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 302 fasta sequence [TAGCCGGAGCTTTCCATAGATTTCATTCCACATATGCGCTCTACCCCAACCAACATCATCAGTCGTAGCCAGCATACCCACTCTTCACATCCAAGTCCAGAGCAGAGCATCAGGTGCAAACACAAAACACAAAGCAGCAGCACGGGCCGGGTCAAAATCCAAAAGCACGCATGCACACAAACGTGGGCACACCACCACGCAACACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCAGCATGCACACACATTCAAACGCAGGCGTCATCATATGCACGCATGCACGGCGTTCAGTTGCC] [+] EMBL CB965284 [TAGCCGGAGCTTTCCATAGATTTCATTCCACATATGCGCTCTACCCCAACCAACATCATCAGTCGTAGCCAGCATACCCACTCTTCACATCCAAGTCCAGAGCAGAGCATCAGGTGCAAACACAAAACACAAAGCAGCAGCACGGGCCGGGTCAAAATCCAAAAGCACGCATGCACACAAACGTGGGCACACCACCACGCAACACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCAGCATGCACACACATTCAAACGCAGGCGTCATCATATGCACGCATGCACGGCGTTCAGTTGCC] consensusID : consensus_2817#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence [AAAACACAAAAGCCAGCAGCCACGGCGCGGTCAAAATCGAAAAGCACGCATGCAACCAAACGTGGGCACACACGACGCAAACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCAGCATGCAACCAATTCAACACGCAGGCTCATCATATGCAC] [+] EMBL CB965820 [AAAACACAAAAGCCAGCAGCCACGGCGCGGTCAAAATCGAAAAGCACGCATGCAACCAAACGTGGGCACACACGACGCAAACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCAGCATGCAACCAATTCAACACGCAGGCTCATCATATGCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2817#0 TAGCCGGAGCTTTCCATAGATTTCATTCCACATATGCGCTCTACCCCAACCAACATCATC 60 consensus_2817#1 ------------------------------------------------------------ consensus_2817#0 AGTCGTAGCCAGCATACCCACTCTTCACATCCAAGTCCAGAGCAGAGCATCAGGTGCAAA 120 consensus_2817#1 ------------------------------------------------------------ consensus_2817#0 CACAAAACACAAAGCAGCAGCACGGGCCGGGTCAAAATCCAAAAGCACGCATGCACACAA 180 consensus_2817#1 -AAAACACAAAAGCCAGCAGCCACGGCGCGGTCAAAATCGAAAAGCACGCATGCAACCAA 59 * ** *** ** ******* *** ********** *************** *** consensus_2817#0 ACGTGGGCACACCACCACGCAACACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCA 240 consensus_2817#1 ACGTGGGCACAC-ACGACGCAA-ACCAAGGGTGGGCAGCACCATCCATCGCAATCCAGCA 117 ************ ** ****** ************************************* consensus_2817#0 GCATGCACACACATTCAAACGCAGGCGTCATCATATGCACGCATGCACGGCGTTCAGTTG 300 consensus_2817#1 GCATGCAACCAATTCAACACGCAGGC-TCATCATATGCAC-------------------- 156 ******* ** * * ******** ************* consensus_2817#0 CC 302 consensus_2817#1 -- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||