These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_283#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 812 fasta sequence [AGACGAAATCTCGGATGGATCCAAGAAATCGGCGGATCTGGATTCTGCAGTCGCAGATAGGTCTTTGCGCAACCGGAGGCGATGGGGGTGGTAGGTAATATATATATCCTTCTGGATATGTCCGGCTGCCATTGTTGAATAATATGAAGAACTCTTTTCTGGAATGAAACACAGATGCATGGAACAGTGAGAAATAAGAAGGGTGCAACGAGGAAAAATCATATGAAGACCTTGACTAGCTGCAGAAAAATGCATTCTCTTTAATTGGAGGTGCATTGGTTTGACTTATTGACTACTCTTCCTGAGTCTTCACTCGTTTTCCCAACTAACTCCGTGTCTTCCCTCCTCTCATCATATAATAGTTCATCAGAACTGTTTCTTGCCACTTCATAGTATTCCTCCTTTCTGAATCTTGATATTGTTCTATAGAGTTGTCCTTGGTAGATACCTGGTACAAGATGCCAGCTTCCACATCTTCATCAACAAATATGTCTTTTGTCCTCACAAGCACAACAGAATTGGCCTCTTCGTATGATATCCAAAGCTCCTCTGAGGAAGCTGCTATTTCCCAGTATCAGCAGTGCTCTTATGAAGCCGGTATTCGCATCTATAAGCAACTTCTGGGGGACATCCCTGAAGATGGACTCGATCTCTCAAATATCCGTATCTGGATTCAGAGGGCAGACTCGCGGATGCTCGAACTGTTCAAGGAAGAATTGGTGGCAATGATTGATCAGAGCATTNCAGAAATCAACAGCAAGCATGGGCAAGAACAAGAATCTGATATGCATCGCCTGCTGAAGCTTGCANGC] [+] EMBL CB671474 [AGACGAAATCTCGGATGGATCCAAGAAATCGGCGGATCTGGATTCTGCAGTCGCAGATAGGTCTTTGCGCAACCGGAGGCGATGGGGGTGGTAGGTAATATATATATCCTTCTGGATATGTCCGGCTGCCATTGTTGAATAATATGAAGAACTCTTTTCTGGAATGAAACACAGATGCATGGAACAGTGAGAAATAAGAAGGGTGCAACGAGGAAAAATCATATGAAGACCTTGACTAGCTGCAGAAAAATGCATTCTCTTTAATTGGAGGTGCATTGGTTTGACTTATTGACTACTCTTCCTGAGTCTTCACTCGTTTTCCCAACTAACTCCGTGTCTTCCCTCCTCTCATCATATAATAGTTCATCAGAACTGTTTCTTGCCACTTCATAGTATTCCTCCTTTCTGAATCTTGATATTGTTCTATAGAGTTGTCCTTGGTAGATACCTGGTACAAGATGCCAGCTTCCACATCTTCATCAACAAATATGTCTTTTGTCCTCACAAGCACAACAGAATTGGCCTCTTCGTATGATATCCAAAGCTCCTCTGAGGAAGCTGCTATTTCCCAGTATCAGCAGTGCTCTTATGAAGCCGGTATTCGCATCTATAAGCAACTTCTGGGGGACATCCCTGAAGATGGACTCGATCTCTCAAATATCCGTATCTGGATTCAGAGGGCAGACTCGCGGATGCTCGAACTGTTCAAGGAAGAATTGGTGGCAATGATTGATCAGAGCATTNCAGAAATCAACAGCAAGCATGGGCAAGAACAAGAATCTGATATGCATCGCCTGCTGAAGCTTGCANGC] consensusID : consensus_283#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence [ATTTTAACACAACTTTCGTTTAGAATTTTTTTTAAAAGATATAATATTTTTTAGTAGTTTAAAAAACGTGCGTGTGGAAAGTGAACTAAGAAACTCAGCCTAACTTCTTAAAAAAAAAAGAAACTCAGCCTAAGGGTCTATTTAGATTGATGACATTTTCAAATATACTATTATTTGGTAAAATTAATAATTATGTGGCTATGTTTAGTTTGTTACTAGTAACGTGTATAGAAATTTAGCAACATTATTAAGCTAATCATACCAAAATTTGGCAATGTCAAAATTTTGACAAATTAACGATATTACTAAAATTTTGGTATGGTTCATTTTGACACCAATCCAAATAGAACTAAGTGATGGGAATAAAAAAATATTGTAATTATCAAAATTTCTCCTCTTTTCTGTCTCCAACTCCATCCTCTCGAGAGAGCTCAATCGCCAGGAAGGCAGGAAGCAAGAGTACCCGCGGCTGTGAAATCAAGACGAAATCTCGTATGAATCCAAGAAATCGGCGGATCTGGATTCTGGAGTCGCGGCTAGGTCTTTGCGCAACCGGAGGCGATGGGGGTGGTAATTTATCCTTCTGGATATGTCCGGCTGCCATTGTTGAATAATATGAAGAACTCTTTTCTGGAATGAAACACAGATGCATGGAACAGTGAGAAATAATGTGCATTTTATTTTTTCAAAAAAAA] [-] EMBL CA760555 [ATTTTAACACAACTTTCGTTTAGAATTTTTTTTAAAAGATATAATATTTTTTAGTAGTTTAAAAAACGTGCGTGTGGAAAGTGAACTAAGAAACTCAGCCTAACTTCTTAAAAAAAAAAGAAACTCAGCCTAAGGGTCTATTTAGATTGATGACATTTTCAAATATACTATTATTTGGTAAAATTAATAATTATGTGGCTATGTTTAGTTTGTTACTAGTAACGTGTATAGAAATTTAGCAACATTATTAAGCTAATCATACCAAAATTTGGCAATGTCAAAATTTTGACAAATTAACGATATTACTAAAATTTTGGTATGGTTCATTTTGACACCAATCCAAATAGAACTAAGTGATGGGAATAAAAAAATATTGTAATTATCAAAATTTCTCCTCTTTTCTGTCTCCAACTCCATCCTCTCGAGAGAGCTCAATCGCCAGGAAGGCAGGAAGCAAGAGTACCCGCGGCTGTGAAATCAAGACGAAATCTCGTATGAATCCAAGAAATCGGCGGATCTGGATTCTGGAGTCGCGGCTAGGTCTTTGCGCAACCGGAGGCGATGGGGGTGGTAATTTATCCTTCTGGATATGTCCGGCTGCCATTGTTGAATAATATGAAGAACTCTTTTCTGGAATGAAACACAGATGCATGGAACAGTGAGAAATAATGTGCATTTTATTTTTTCAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_283#0 AGACGAAATCTCGGATGGATCCAAGAAATCGGCGGATCTGGATTCTGCAGTCGCAGATAG 60 consensus_283#1 ------------------------------------------------------------ consensus_283#0 GTCTTTGCGCAACCGGAGGCGATGGGGGTGGTAGGTAATATATATATCCTTCTGGATATG 120 consensus_283#1 ---------------------------------------------ATTTTAACACAACTT 15 ** * * * consensus_283#0 TCCGGCTGCCATTGTTGAATAATATGAAGAACTCTTTTCTGGAATGAAACACAGATGCAT 180 consensus_283#1 TCGTTTAGAATTTTTTTTAAAAGATATAATATTTTTTAGTAGTTTAAAAAACGTGCGTGT 75 ** * ** ** * ** ** * * * *** * * * *** ** * * consensus_283#0 GGAACAGTGAGAAATAAGAAGGGTGCAACGAGGAAAAATCATATGAAG---ACCTTGACT 237 consensus_283#1 GGAAAGTGAACTAAGAAACTCAGCCTAACTTCTTAAAAAAAAAAGAAACTCAGCCTAAGG 135 **** * ** ** * *** **** * * *** * * * * consensus_283#0 AGCTGCAGAAAAATGCATTCTCTTTAATTGGAGGTGCATTGGTTTGACTTATTGACTA-- 295 consensus_283#1 GTCTATTTAGATTGATGACATTTTCAAATATACTATTATTTGGTAAAATTAATAATTATG 195 ** * * * ** ** * * *** * * * *** * * ** consensus_283#0 ---CTCTTCCTGAGTCTTCACTCGT--TTTCCCAACTAACTCCGTGTCTTCCCTCCTCTC 350 consensus_283#1 TGGCTATGTTTAGTTTGTTACTAGTAACGTGTATAGAAATTTAGCAACATTATTAAGCTA 255 ** * * * * *** ** * * ** * * * * * ** consensus_283#0 ATCATATAATAGTTCATCAGAACTGT--TTCTTGCCACTTCATAGTATTCCTCCTTTCTG 408 consensus_283#1 ATCATACCAAAATTTGGCAATGTCAAAATTTTGACAAATTAACGATATTACT------AA 309 ****** * * ** ** ** * * * ** * **** ** consensus_283#0 AATCTTGATATTGTTC--TATAGAGTTGTCCTTGGTAGATACCTGGTACAAGATGCCAGC 466 consensus_283#1 AATTTTGGTATGGTTCATTTTGACACCAATCCAAATAGA-ACTAAGTGATGGGAATAAAA 368 *** *** *** **** * * * **** ** ** * * consensus_283#0 TTCCACATCTTCATCAACAAATATGTCTTTTGTCCTCACAAGCACAACAGAATTGGCCTC 526 consensus_283#1 AA--ATATTGTAATTATCAAA-ATTTCTCCTCTTTTC-----TGTCTCCAACTCCATCCT 420 * ** * ** * **** ** *** * * ** * * * * consensus_283#0 TTCGTATGATATCCAAAGCTCCTCTGAGGAAGCTGCTATTTCCCAGTATCAGCAGTGCTC 586 consensus_283#1 CTCGAGAGAGCTCAATCGCC------AGGAAGGCAGGAAGCAAGAGTACCCGCGGCTGTG 474 *** ** ** * ** ****** * **** * ** * * consensus_283#0 TTATGAAGCCGGTAT-TCGCATCTAT--AAGCAACTTCTGGGGGACATCCCTGAAGATG- 642 consensus_283#1 AAATCAAGACGAAATCTCGTATGAATCCAAGAAATCGGCGGATCTGGATTCTGGAGTCGC 534 ** *** ** ** *** ** ** *** ** ** *** ** * consensus_283#0 GACTCGATCTCTCAAATATCCGTATCTGGATTCAGAGGGCAGACTCGCGGATGCTCGAAC 702 consensus_283#1 GGCTAGGTCTTTGCGCAACCGGAGGC--GATGGGGGTGGTAATTTATCC--TTCTGGATA 590 * ** * *** * * * * * *** * ** * * * * ** ** consensus_283#0 TGTTCAAGGAAGAATTGGTGGCAATGAT-TGATCAGAGCATTNCAGAAATCAACAGCAAG 761 consensus_283#1 TGTCCG-GCTGCCATTGTTG--AATAATATGAAGAACTCTTTTCTGGAATGAAACACAGA 647 *** * * **** ** *** ** *** * * ** * * *** ** ** consensus_283#0 CATGGGCAAGAACAAGAATCTGATATGCATCGCCTGCTGAAGCTTGCANGC 812 consensus_283#1 TGCATGGAACAGTGAGAAA-TAATGTGCATTTTATTTTTTCAAAAAAAA-- 695 * ** * **** * ** ***** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||