cluster # 283

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Oryza sativa
cluster # 283 cluster # 283 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_283#0 length = 812 sequences # 1

consensus_283#1 length = 695 sequences # 1

consensusID : consensus_283#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 812
fasta sequence

                              [AGACGAAATCTCGGATGGATCCAAGAAATCGGCGGATCTGGATTCTGCAGTCGCAGATAGGTCTTTGCGCAACCGGAGGCGATGGGGGTGGTAGGTAATATATATATCCTTCTGGATATGTCCGGCTGCCATTGTTGAATAATATGAAGAACTCTTTTCTGGAATGAAACACAGATGCATGGAACAGTGAGAAATAAGAAGGGTGCAACGAGGAAAAATCATATGAAGACCTTGACTAGCTGCAGAAAAATGCATTCTCTTTAATTGGAGGTGCATTGGTTTGACTTATTGACTACTCTTCCTGAGTCTTCACTCGTTTTCCCAACTAACTCCGTGTCTTCCCTCCTCTCATCATATAATAGTTCATCAGAACTGTTTCTTGCCACTTCATAGTATTCCTCCTTTCTGAATCTTGATATTGTTCTATAGAGTTGTCCTTGGTAGATACCTGGTACAAGATGCCAGCTTCCACATCTTCATCAACAAATATGTCTTTTGTCCTCACAAGCACAACAGAATTGGCCTCTTCGTATGATATCCAAAGCTCCTCTGAGGAAGCTGCTATTTCCCAGTATCAGCAGTGCTCTTATGAAGCCGGTATTCGCATCTATAAGCAACTTCTGGGGGACATCCCTGAAGATGGACTCGATCTCTCAAATATCCGTATCTGGATTCAGAGGGCAGACTCGCGGATGCTCGAACTGTTCAAGGAAGAATTGGTGGCAATGATTGATCAGAGCATTNCAGAAATCAACAGCAAGCATGGGCAAGAACAAGAATCTGATATGCATCGCCTGCTGAAGCTTGCANGC]

[+] EMBL CB671474             [AGACGAAATCTCGGATGGATCCAAGAAATCGGCGGATCTGGATTCTGCAGTCGCAGATAGGTCTTTGCGCAACCGGAGGCGATGGGGGTGGTAGGTAATATATATATCCTTCTGGATATGTCCGGCTGCCATTGTTGAATAATATGAAGAACTCTTTTCTGGAATGAAACACAGATGCATGGAACAGTGAGAAATAAGAAGGGTGCAACGAGGAAAAATCATATGAAGACCTTGACTAGCTGCAGAAAAATGCATTCTCTTTAATTGGAGGTGCATTGGTTTGACTTATTGACTACTCTTCCTGAGTCTTCACTCGTTTTCCCAACTAACTCCGTGTCTTCCCTCCTCTCATCATATAATAGTTCATCAGAACTGTTTCTTGCCACTTCATAGTATTCCTCCTTTCTGAATCTTGATATTGTTCTATAGAGTTGTCCTTGGTAGATACCTGGTACAAGATGCCAGCTTCCACATCTTCATCAACAAATATGTCTTTTGTCCTCACAAGCACAACAGAATTGGCCTCTTCGTATGATATCCAAAGCTCCTCTGAGGAAGCTGCTATTTCCCAGTATCAGCAGTGCTCTTATGAAGCCGGTATTCGCATCTATAAGCAACTTCTGGGGGACATCCCTGAAGATGGACTCGATCTCTCAAATATCCGTATCTGGATTCAGAGGGCAGACTCGCGGATGCTCGAACTGTTCAAGGAAGAATTGGTGGCAATGATTGATCAGAGCATTNCAGAAATCAACAGCAAGCATGGGCAAGAACAAGAATCTGATATGCATCGCCTGCTGAAGCTTGCANGC]




>consensus_283#0
AGACGAAATCTCGGATGGATCCAAGAAATCGGCGGATCTGGATTCTGCAGTCGCAGATAG
GTCTTTGCGCAACCGGAGGCGATGGGGGTGGTAGGTAATATATATATCCTTCTGGATATG
TCCGGCTGCCATTGTTGAATAATATGAAGAACTCTTTTCTGGAATGAAACACAGATGCAT
GGAACAGTGAGAAATAAGAAGGGTGCAACGAGGAAAAATCATATGAAGACCTTGACTAGC
TGCAGAAAAATGCATTCTCTTTAATTGGAGGTGCATTGGTTTGACTTATTGACTACTCTT
CCTGAGTCTTCACTCGTTTTCCCAACTAACTCCGTGTCTTCCCTCCTCTCATCATATAAT
AGTTCATCAGAACTGTTTCTTGCCACTTCATAGTATTCCTCCTTTCTGAATCTTGATATT
GTTCTATAGAGTTGTCCTTGGTAGATACCTGGTACAAGATGCCAGCTTCCACATCTTCAT
CAACAAATATGTCTTTTGTCCTCACAAGCACAACAGAATTGGCCTCTTCGTATGATATCC
AAAGCTCCTCTGAGGAAGCTGCTATTTCCCAGTATCAGCAGTGCTCTTATGAAGCCGGTA
TTCGCATCTATAAGCAACTTCTGGGGGACATCCCTGAAGATGGACTCGATCTCTCAAATA
TCCGTATCTGGATTCAGAGGGCAGACTCGCGGATGCTCGAACTGTTCAAGGAAGAATTGG
TGGCAATGATTGATCAGAGCATTNCAGAAATCAACAGCAAGCATGGGCAAGAACAAGAAT
CTGATATGCATCGCCTGCTGAAGCTTGCANGC

consensusID : consensus_283#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [ATTTTAACACAACTTTCGTTTAGAATTTTTTTTAAAAGATATAATATTTTTTAGTAGTTTAAAAAACGTGCGTGTGGAAAGTGAACTAAGAAACTCAGCCTAACTTCTTAAAAAAAAAAGAAACTCAGCCTAAGGGTCTATTTAGATTGATGACATTTTCAAATATACTATTATTTGGTAAAATTAATAATTATGTGGCTATGTTTAGTTTGTTACTAGTAACGTGTATAGAAATTTAGCAACATTATTAAGCTAATCATACCAAAATTTGGCAATGTCAAAATTTTGACAAATTAACGATATTACTAAAATTTTGGTATGGTTCATTTTGACACCAATCCAAATAGAACTAAGTGATGGGAATAAAAAAATATTGTAATTATCAAAATTTCTCCTCTTTTCTGTCTCCAACTCCATCCTCTCGAGAGAGCTCAATCGCCAGGAAGGCAGGAAGCAAGAGTACCCGCGGCTGTGAAATCAAGACGAAATCTCGTATGAATCCAAGAAATCGGCGGATCTGGATTCTGGAGTCGCGGCTAGGTCTTTGCGCAACCGGAGGCGATGGGGGTGGTAATTTATCCTTCTGGATATGTCCGGCTGCCATTGTTGAATAATATGAAGAACTCTTTTCTGGAATGAAACACAGATGCATGGAACAGTGAGAAATAATGTGCATTTTATTTTTTCAAAAAAAA]

[-] EMBL CA760555             [ATTTTAACACAACTTTCGTTTAGAATTTTTTTTAAAAGATATAATATTTTTTAGTAGTTTAAAAAACGTGCGTGTGGAAAGTGAACTAAGAAACTCAGCCTAACTTCTTAAAAAAAAAAGAAACTCAGCCTAAGGGTCTATTTAGATTGATGACATTTTCAAATATACTATTATTTGGTAAAATTAATAATTATGTGGCTATGTTTAGTTTGTTACTAGTAACGTGTATAGAAATTTAGCAACATTATTAAGCTAATCATACCAAAATTTGGCAATGTCAAAATTTTGACAAATTAACGATATTACTAAAATTTTGGTATGGTTCATTTTGACACCAATCCAAATAGAACTAAGTGATGGGAATAAAAAAATATTGTAATTATCAAAATTTCTCCTCTTTTCTGTCTCCAACTCCATCCTCTCGAGAGAGCTCAATCGCCAGGAAGGCAGGAAGCAAGAGTACCCGCGGCTGTGAAATCAAGACGAAATCTCGTATGAATCCAAGAAATCGGCGGATCTGGATTCTGGAGTCGCGGCTAGGTCTTTGCGCAACCGGAGGCGATGGGGGTGGTAATTTATCCTTCTGGATATGTCCGGCTGCCATTGTTGAATAATATGAAGAACTCTTTTCTGGAATGAAACACAGATGCATGGAACAGTGAGAAATAATGTGCATTTTATTTTTTCAAAAAAAA]




>consensus_283#1
ATTTTAACACAACTTTCGTTTAGAATTTTTTTTAAAAGATATAATATTTTTTAGTAGTTT
AAAAAACGTGCGTGTGGAAAGTGAACTAAGAAACTCAGCCTAACTTCTTAAAAAAAAAAG
AAACTCAGCCTAAGGGTCTATTTAGATTGATGACATTTTCAAATATACTATTATTTGGTA
AAATTAATAATTATGTGGCTATGTTTAGTTTGTTACTAGTAACGTGTATAGAAATTTAGC
AACATTATTAAGCTAATCATACCAAAATTTGGCAATGTCAAAATTTTGACAAATTAACGA
TATTACTAAAATTTTGGTATGGTTCATTTTGACACCAATCCAAATAGAACTAAGTGATGG
GAATAAAAAAATATTGTAATTATCAAAATTTCTCCTCTTTTCTGTCTCCAACTCCATCCT
CTCGAGAGAGCTCAATCGCCAGGAAGGCAGGAAGCAAGAGTACCCGCGGCTGTGAAATCA
AGACGAAATCTCGTATGAATCCAAGAAATCGGCGGATCTGGATTCTGGAGTCGCGGCTAG
GTCTTTGCGCAACCGGAGGCGATGGGGGTGGTAATTTATCCTTCTGGATATGTCCGGCTG
CCATTGTTGAATAATATGAAGAACTCTTTTCTGGAATGAAACACAGATGCATGGAACAGT
GAGAAATAATGTGCATTTTATTTTTTCAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_283#0      AGACGAAATCTCGGATGGATCCAAGAAATCGGCGGATCTGGATTCTGCAGTCGCAGATAG 60
consensus_283#1      ------------------------------------------------------------
                                                                                 

consensus_283#0      GTCTTTGCGCAACCGGAGGCGATGGGGGTGGTAGGTAATATATATATCCTTCTGGATATG 120
consensus_283#1      ---------------------------------------------ATTTTAACACAACTT 15
                                                                  **  *     *  * 

consensus_283#0      TCCGGCTGCCATTGTTGAATAATATGAAGAACTCTTTTCTGGAATGAAACACAGATGCAT 180
consensus_283#1      TCGTTTAGAATTTTTTTTAAAAGATATAATATTTTTTAGTAGTTTAAAAAACGTGCGTGT 75
                     **     *   ** **  * ** **  *  * * ***  * *  * *** **    *  *

consensus_283#0      GGAACAGTGAGAAATAAGAAGGGTGCAACGAGGAAAAATCATATGAAG---ACCTTGACT 237
consensus_283#1      GGAAAGTGAACTAAGAAACTCAGCCTAACTTCTTAAAAAAAAAAGAAACTCAGCCTAAGG 135
                     ****     *  ** **     *   ***     ****  * * ***    * * * *  

consensus_283#0      AGCTGCAGAAAAATGCATTCTCTTTAATTGGAGGTGCATTGGTTTGACTTATTGACTA-- 295
consensus_283#1      GTCTATTTAGATTGATGACATTTTCAAATATACTATTATTTGGTAAAATTAATAATTATG 195
                       **    * *         * ** ** *  *     *** * *  * *** * * **  

consensus_283#0      ---CTCTTCCTGAGTCTTCACTCGT--TTTCCCAACTAACTCCGTGTCTTCCCTCCTCTC 350
consensus_283#1      TGGCTATGTTTAGTTTGTTACTAGTAACGTGTATAGAAATTTAGCAACATTATTAAGCTA 255
                        ** *   *   *  * *** **    *    *  ** *  *   * *   *   ** 

consensus_283#0      ATCATATAATAGTTCATCAGAACTGT--TTCTTGCCACTTCATAGTATTCCTCCTTTCTG 408
consensus_283#1      ATCATACCAAAATTTGGCAATGTCAAAATTTTGACAAATTAACGATATTACT------AA 309
                     ******  * * **   **         ** *  * * ** *   **** **        

consensus_283#0      AATCTTGATATTGTTC--TATAGAGTTGTCCTTGGTAGATACCTGGTACAAGATGCCAGC 466
consensus_283#1      AATTTTGGTATGGTTCATTTTGACACCAATCCAAATAGA-ACTAAGTGATGGGAATAAAA 368
                     *** *** *** ****  * *         *    **** **   **    *     *  

consensus_283#0      TTCCACATCTTCATCAACAAATATGTCTTTTGTCCTCACAAGCACAACAGAATTGGCCTC 526
consensus_283#1      AA--ATATTGTAATTATCAAA-ATTTCTCCTCTTTTC-----TGTCTCCAACTCCATCCT 420
                         * **  * ** * **** ** ***  * *  **          *  * *    *  

consensus_283#0      TTCGTATGATATCCAAAGCTCCTCTGAGGAAGCTGCTATTTCCCAGTATCAGCAGTGCTC 586
consensus_283#1      CTCGAGAGAGCTCAATCGCC------AGGAAGGCAGGAAGCAAGAGTACCCGCGGCTGTG 474
                      ***   **  ** *  **       ******     *      **** * ** *   * 

consensus_283#0      TTATGAAGCCGGTAT-TCGCATCTAT--AAGCAACTTCTGGGGGACATCCCTGAAGATG- 642
consensus_283#1      AAATCAAGACGAAATCTCGTATGAATCCAAGAAATCGGCGGATCTGGATTCTGGAGTCGC 534
                       ** *** **  ** *** **  **  *** **     **         *** **  * 

consensus_283#0      GACTCGATCTCTCAAATATCCGTATCTGGATTCAGAGGGCAGACTCGCGGATGCTCGAAC 702
consensus_283#1      GGCTAGGTCTTTGCGCAACCGGAGGC--GATGGGGGTGGTAATTTATCC--TTCTGGATA 590
                     * ** * *** *     * * *   *  ***   *  ** *   *  *   * ** **  

consensus_283#0      TGTTCAAGGAAGAATTGGTGGCAATGAT-TGATCAGAGCATTNCAGAAATCAACAGCAAG 761
consensus_283#1      TGTCCG-GCTGCCATTGTTG--AATAATATGAAGAACTCTTTTCTGGAATGAAACACAGA 647
                     *** *  *     **** **  *** ** ***  *   * ** * * *** **   **  

consensus_283#0      CATGGGCAAGAACAAGAATCTGATATGCATCGCCTGCTGAAGCTTGCANGC 812
consensus_283#1      TGCATGGAACAGTGAGAAA-TAATGTGCATTTTATTTTTTCAAAAAAAA-- 695
                          * ** *   ****  * ** *****    *  *         *