These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_284#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [TCCTTCCACAGCACCCACCACAAGTTATCATCCAGCACCAGGTCAACCAGACTGCCACCAACTCTAGGAATCACCTCCATTGCCTCCACATCCGGAAATCCAGCCAGTGAATTATATGCCTGGCGACACCCTGAGCAGAAGATCTTACCTGCTACAACTGTCAAGAGGGTCGTCATTCGTTCCGTCAAAGATTAACACGCAGAGCACGTCTCCGGTGTAACTCCAGCTAGTAGGACACCTGAAGGAACAAGTCAACCAGCGACAGAATTACGCGAAGCATTGCCAGTACCAGTTGAGACCTTTACTTATCAAGTACAGCAGCAGTCCACAAGTTTTCTAAATTTGTAGTACTCTTATTTGTACACTAGAAGTTTTATGCGCAGTTATGTAAGGTAAAAGGGAATGCTTGATTAAAGTATGAGTCAGGCTGTTTTTCTTTTCCTATGATTCAAAAAAAAAA] [+] EMBL BI812304 [TCCTTCCACAGCACCCACCACAAGTTATCATCCAGCACCAGGTCAACCAGACTGCCACCAACTCTAGGAATCACCTCCATTGCCTCCACATCCGGAAATCCAGCCAGTGAATTATATGCCTGGCGACACCCTGAGCAGAAGATCTTACCTGCTACAACTGTCAAGAGGGTCGTCATTCGTTCCGTCAAAGATTAACACGCAGAGCACGTCTCCGGTGTAACTCCAGCTAGTAGGACACCTGAAGGAACAAGTCAACCAGCGACAGAATTACGCGAAGCATTGCCAGTACCAGTTGAGACCTTTACTTATCAAGTACAGCAGCAGTCCACAAGTTTTCTAAATTTGTAGTACTCTTATTTGTACACTAGAAGTTTTATGCGCAGTTATGTAAGGTAAAAGGGAATGCTTGATTAAAGTATGAGTCAGGCTGTTTTTCTTTTCCTATGATTCAAAAAAAAAA] consensusID : consensus_284#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 161 fasta sequence [AGAGGGTCGTCATTCGTTCCGTTCAGAAGAGTTAACACGCAGAGCAACGTTTCCGGTGAAACTCCAGCTAGTAGGAATCTGAAGGAACAAGTCAACCAGGACAGAATTACGGAAGCAATTGCAAGTACCAGGTTGAGACCTTTACTTATCAAGTACAGCAG] [+] EMBL BI808475 [AGAGGGTCGTCATTCGTTCCGTTCAGAAGAGTTAACACGCAGAGCAACGTTTCCGGTGAAACTCCAGCTAGTAGGAATCTGAAGGAACAAGTCAACCAGGACAGAATTACGGAAGCAATTGCAAGTACCAGGTTGAGACCTTTACTTATCAAGTACAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_284#0 TCCTTCCACAGCACCCACCACAAGTTATCATCCAGCACCAGGTCAACCAGACTGCCACCA 60 consensus_284#1 ------------------------------------------------------------ consensus_284#0 ACTCTAGGAATCACCTCCATTGCCTCCACATCCGGAAATCCAGCCAGTGAATTATATGCC 120 consensus_284#1 ------------------------------------------------------------ consensus_284#0 TGGCGACACCCTGAGCAGAAGATCTTACCTGCTACAACTGTCAAGAGGGTCGTCATTCGT 180 consensus_284#1 -------------------------------------------AGAGGGTCGTCATTCGT 17 ***************** consensus_284#0 TCCGTC---AAAGATTAACACGCAGAGCA-CGTCTCCGGTGTAACTCCAGCTAGTAGGAC 236 consensus_284#1 TCCGTTCAGAAGAGTTAACACGCAGAGCAACGTTTCCGGTGAAACTCCAGCTAGTAGGA- 76 ***** ** *************** *** ******* ***************** consensus_284#0 ACCTGAAGGAACAAGTCAACCAGCGACAGAATTACGCGAAGCATTGCCAGTACCAG-TTG 295 consensus_284#1 ATCTGAAGGAACAAGTCAACCAG-GACAGAATTACGGAAGCAATTGCAAGTACCAGGTTG 135 * ********************* ************ * ***** ******** *** consensus_284#0 AGACCTTTACTTATCAAGTACAGCAGCAGTCCACAAGTTTTCTAAATTTGTAGTACTCTT 355 consensus_284#1 AGACCTTTACTTATCAAGTACAGCAG---------------------------------- 161 ************************** consensus_284#0 ATTTGTACACTAGAAGTTTTATGCGCAGTTATGTAAGGTAAAAGGGAATGCTTGATTAAA 415 consensus_284#1 ------------------------------------------------------------ consensus_284#0 GTATGAGTCAGGCTGTTTTTCTTTTCCTATGATTCAAAAAAAAAA 460 consensus_284#1 --------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||