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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2857#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 912 fasta sequence
[TTTATCTGATGGGAGTTACAGGAATGTCATGGACATGAATGCCGGCTTTGGTGGCTTTGCTGCGGCTATGTCTGAATATCCTGTTTGGGTCATGAATGTAGTTCCTGCAAATCTGACGGACAATACACTTGGTATCATCTATGAGCGTGGCTTGATAGGAACATACATGGACTGGTGCGAGTCTTTCTCTACTTATCCACGTACATATGATGTGCTACATGCCAATGGAGTATTCAGCCTGTATATGGACACGTGTGGCATCCCTTACATCATGCTCGAGATGGATCGCATTCTCCGGCCAGGAGGTGCTGCGATAATCCGGGACGCGCCTGATGTGGTTCACAAGGTGAAGGATGCTGCAGACAGGCTACACTGGCACAGCGAAATCGTTGACACTGAGAATGGGGGCCTGGATCCTGAGAAGCTTCTCATCGTGGACAATTCTCTTCCATTCCCAGATCACCCTGCATGATGTTGATAATTTCCACATCTTCTCTGATCATCATCTTCAGAATCAGAAAAGATTGTTCTTGGATGCTTGTATACATGCACAGATGAAGAGTATAAGAGGACTCTACACGCAATAGTTACATATCCAGATGACCACATAGCCGAATAATCCAATGTATTTGAGCTGTTTACTCCACTAGACACTGTCAGATTCCAATAAACCAGTATAGGTAACTTAATCTCCTGAGCTCTGTGTTGTTCCCAGCATGGTGTTGGATGTGCAGAGATGCAACCATGCTCGATTCTGTAGAGATGTAGTATCTAATTGCTCTGCATTTGTATATTGTATACTAGCTGTGTATTATCGGTGAGATTTCTGTGAAATTCCTTCAGAGTTTGCCTTGCTTTGCTTGCTAAGCAATGGCATGATTCATGTATGATGATGGAATCTGTAGCCTCTAC]
[+] EMBL AK108736 [TTTATCTGATGGGAGTTACAGGAATGTCATGGACATGAATGCCGGCTTTGGTGGCTTTGCTGCGGCTATGTCTGAATATCCTGTTTGGGTCATGAATGTAGTTCCTGCAAATCTGACGGACAATACACTTGGTATCATCTATGAGCGTGGCTTGATAGGAACATACATGGACTGGTGCGAGTCTTTCTCTACTTATCCACGTACATATGATGTGCTACATGCCAATGGAGTATTCAGCCTGTATATGGACACGTGTGGCATCCCTTACATCATGCTCGAGATGGATCGCATTCTCCGGCCAGGAGGTGCTGCGATAATCCGGGACGCGCCTGATGTGGTTCACAAGGTGAAGGATGCTGCAGACAGGCTACACTGGCACAGCGAAATCGTTGACACTGAGAATGGGGGCCTGGATCCTGAGAAGCTTCTCATCGTGGACAATTCTCTTCCATTCCCAGATCACCCTGCATGATGTTGATAATTTCCACATCTTCTCTGATCATCATCTTCAGAATCAGAAAAGATTGTTCTTGGATGCTTGTATACATGCACAGATGAAGAGTATAAGAGGACTCTACACGCAATAGTTACATATCCAGATGACCACATAGCCGAATAATCCAATGTATTTGAGCTGTTTACTCCACTAGACACTGTCAGATTCCAATAAACCAGTATAGGTAACTTAATCTCCTGAGCTCTGTGTTGTTCCCAGCATGGTGTTGGATGTGCAGAGATGCAACCATGCTCGATTCTGTAGAGATGTAGTATCTAATTGCTCTGCATTTGTATATTGTATACTAGCTGTGTATTATCGGTGAGATTTCTGTGAAATTCCTTCAGAGTTTGCCTTGCTTTGCTTGCTAAGCAATGGCATGATTCATGTATGATGATGGAATCTGTAGCCTCTAC]
consensusID : consensus_2857#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 597 fasta sequence
[CGAGNACAAGGGGGTAGTTCCTGCAAATCTGACGGACAATACACTTGGTATCATCTATGAGCGTGGCTTGATAGGAACATACATGGACTGGTGCGAGTCTTTCTCTACTTATCCACGTACATATGATGTGCTACATGCCAATGGAGTATTCAGCCTGTATATGGACACGTGTGGCATCCCTTACATCATGCTCGAGATGGATCGCATTCTCCGGCCAGGAGGCGCTGCGATAATCCGGGACGCGCCTGATGTGGTTCACAAGGTGAAGGATGCTGCAGACAGGCTACACTGGCACAGCGAAATCGTTGACATTGAGAATGGGGGCCTGGATCCTGAGAAGCTTCTCATCGTGGACAATTCTCTTCCATTCCCAGATCACCCTGCATGATGTTGATAATTTCCACATCTTCTCTGATCATCATCTTCAGAATCAGAAAAGATTGTTCTTGGATGCTTGTATACATGCACAGATGAAGAGTATAAGAGGACTCTACACGCAATAGTTACATATCCAGATGACCACATAGCCGAATAATCCAATGTATTTGAGCTGTTTACTCCACTAGACACTGTCAGATTCCAATAAACCAGTATAGG]
[+] EMBL CA764279 [CGAGNACAAGGGGGTAGTTCCTGCAAATCTGACGGACAATACACTTGGTATCATCTATGAGCGTGGCTTGATAGGAACATACATGGACTGGTGCGAGTCTTTCTCTACTTATCCACGTACATATGATGTGCTACATGCCAATGGAGTATTCAGCCTGTATATGGACACGTGTGGCATCCCTTACATCATGCTCGAGATGGATCGCATTCTCCGGCCAGGAGGCGCTGCGATAATCCGGGACGCGCCTGATGTGGTTCACAAGGTGAAGGATGCTGCAGACAGGCTACACTGGCACAGCGAAATCGTTGACATTGAGAATGGGGGCCTGGATCCTGAGAAGCTTCTCATCGTGGACAATTCTCTTCCATTCCCAGATCACCCTGCATGATGTTGATAATTTCCACATCTTCTCTGATCATCATCTTCAGAATCAGAAAAGATTGTTCTTGGATGCTTGTATACATGCACAGATGAAGAGTATAAGAGGACTCTACACGCAATAGTTACATATCCAGATGACCACATAGCCGAATAATCCAATGTATTTGAGCTGTTTACTCCACTAGACACTGTCAGATTCCAATAAACCAGTATAGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_2857#0 TTTATCTGATGGGAGTTACAGGAATGTCATGGACATGAATGCCGGCTTTGGTGGCTTTGC 60
consensus_2857#1 ------------------------------------------------------------
consensus_2857#0 TGCGGCTATGTCTGAATATCCTGTTTGGGTCATGAATGTAGTTCCTGCAAATCTGACGGA 120
consensus_2857#1 ------------------------CGAGNACAAGGGGGTAGTTCCTGCAAATCTGACGGA 36
* ** * ***********************
consensus_2857#0 CAATACACTTGGTATCATCTATGAGCGTGGCTTGATAGGAACATACATGGACTGGTGCGA 180
consensus_2857#1 CAATACACTTGGTATCATCTATGAGCGTGGCTTGATAGGAACATACATGGACTGGTGCGA 96
************************************************************
consensus_2857#0 GTCTTTCTCTACTTATCCACGTACATATGATGTGCTACATGCCAATGGAGTATTCAGCCT 240
consensus_2857#1 GTCTTTCTCTACTTATCCACGTACATATGATGTGCTACATGCCAATGGAGTATTCAGCCT 156
************************************************************
consensus_2857#0 GTATATGGACACGTGTGGCATCCCTTACATCATGCTCGAGATGGATCGCATTCTCCGGCC 300
consensus_2857#1 GTATATGGACACGTGTGGCATCCCTTACATCATGCTCGAGATGGATCGCATTCTCCGGCC 216
************************************************************
consensus_2857#0 AGGAGGTGCTGCGATAATCCGGGACGCGCCTGATGTGGTTCACAAGGTGAAGGATGCTGC 360
consensus_2857#1 AGGAGGCGCTGCGATAATCCGGGACGCGCCTGATGTGGTTCACAAGGTGAAGGATGCTGC 276
****** *****************************************************
consensus_2857#0 AGACAGGCTACACTGGCACAGCGAAATCGTTGACACTGAGAATGGGGGCCTGGATCCTGA 420
consensus_2857#1 AGACAGGCTACACTGGCACAGCGAAATCGTTGACATTGAGAATGGGGGCCTGGATCCTGA 336
*********************************** ************************
consensus_2857#0 GAAGCTTCTCATCGTGGACAATTCTCTTCCATTCCCAGATCACCCTGCATGATGTTGATA 480
consensus_2857#1 GAAGCTTCTCATCGTGGACAATTCTCTTCCATTCCCAGATCACCCTGCATGATGTTGATA 396
************************************************************
consensus_2857#0 ATTTCCACATCTTCTCTGATCATCATCTTCAGAATCAGAAAAGATTGTTCTTGGATGCTT 540
consensus_2857#1 ATTTCCACATCTTCTCTGATCATCATCTTCAGAATCAGAAAAGATTGTTCTTGGATGCTT 456
************************************************************
consensus_2857#0 GTATACATGCACAGATGAAGAGTATAAGAGGACTCTACACGCAATAGTTACATATCCAGA 600
consensus_2857#1 GTATACATGCACAGATGAAGAGTATAAGAGGACTCTACACGCAATAGTTACATATCCAGA 516
************************************************************
consensus_2857#0 TGACCACATAGCCGAATAATCCAATGTATTTGAGCTGTTTACTCCACTAGACACTGTCAG 660
consensus_2857#1 TGACCACATAGCCGAATAATCCAATGTATTTGAGCTGTTTACTCCACTAGACACTGTCAG 576
************************************************************
consensus_2857#0 ATTCCAATAAACCAGTATAGGTAACTTAATCTCCTGAGCTCTGTGTTGTTCCCAGCATGG 720
consensus_2857#1 ATTCCAATAAACCAGTATAGG--------------------------------------- 597
*********************
consensus_2857#0 TGTTGGATGTGCAGAGATGCAACCATGCTCGATTCTGTAGAGATGTAGTATCTAATTGCT 780
consensus_2857#1 ------------------------------------------------------------
consensus_2857#0 CTGCATTTGTATATTGTATACTAGCTGTGTATTATCGGTGAGATTTCTGTGAAATTCCTT 840
consensus_2857#1 ------------------------------------------------------------
consensus_2857#0 CAGAGTTTGCCTTGCTTTGCTTGCTAAGCAATGGCATGATTCATGTATGATGATGGAATC 900
consensus_2857#1 ------------------------------------------------------------
consensus_2857#0 TGTAGCCTCTAC 912
consensus_2857#1 ------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||