These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_286#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 763 fasta sequence [ACGAGACAAGGGGGAACATCACAACATCTGCAACCAGTCTAGGTCTTCCCAGCCTCCAGGCTCGCCACGCGTGGGTTCCGGCTGGTCTCTTGACAGTTTGACTGCGAGAAACCTCTGCCAGCAGGCTTTGGCTGCTGCCTGGAACCGGTCAACATGCAATGTTCCGTGCCCCTCATCGCGTCTTAATGATGCTCTACCCGCGAGCGGGCAACCAACCCCAAGGTTGCTTGCTGGGTCGACTCGACGTATTTTCGCCTGCTTAACCTCGGACCCGTCCCGCTCTGCATAATGCCCGTACTATCAAATATCGGATTTCCATGACGGACCACCCATCGAATCCAGACAAAGCACCCTCTTGATCCTCGGGCTTCCGCATCCAGCGCCTTGGCTACAAGAGCAGGGAATTTGACTGGTAATCAGTGAGAAGGCATTCTGCTCTTCTGATATGGACTCCTCATGCGTAAGTTACCAGTCTTGCTTCGTGGTCTACTCCTGGAAGGGGGCCATTTCGGGCGAATCCCACCTGCGGGTCTATCAGCACCATTGTGGAAAATGTGAGTGGGGGGCACAAGGCTTACCGGTAATGCTTGCCGCTGAGATCCGTCGTCGCGCCAGCGACCCGGTTGGCGATAACGGTTCCTGGCTGCTCGGGTTTGAGCAACTTGCCCTCATTGTGCTCATCTATGAAGCTTTGGTGGTCTGTGGCCTTCATGGAGCTGCCACCGAGTTCTCTGATCTGCTGCTGCATAGCTGNTGCGACTTT] [+] EMBL CA766790 [ACGAGACAAGGGGGAACATCACAACATCTGCAACCAGTCTAGGTCTTCCCAGCCTCCAGGCTCGCCACGCGTGGGTTCCGGCTGGTCTCTTGACAGTTTGACTGCGAGAAACCTCTGCCAGCAGGCTTTGGCTGCTGCCTGGAACCGGTCAACATGCAATGTTCCGTGCCCCTCATCGCGTCTTAATGATGCTCTACCCGCGAGCGGGCAACCAACCCCAAGGTTGCTTGCTGGGTCGACTCGACGTATTTTCGCCTGCTTAACCTCGGACCCGTCCCGCTCTGCATAATGCCCGTACTATCAAATATCGGATTTCCATGACGGACCACCCATCGAATCCAGACAAAGCACCCTCTTGATCCTCGGGCTTCCGCATCCAGCGCCTTGGCTACAAGAGCAGGGAATTTGACTGGTAATCAGTGAGAAGGCATTCTGCTCTTCTGATATGGACTCCTCATGCGTAAGTTACCAGTCTTGCTTCGTGGTCTACTCCTGGAAGGGGGCCATTTCGGGCGAATCCCACCTGCGGGTCTATCAGCACCATTGTGGAAAATGTGAGTGGGGGGCACAAGGCTTACCGGTAATGCTTGCCGCTGAGATCCGTCGTCGCGCCAGCGACCCGGTTGGCGATAACGGTTCCTGGCTGCTCGGGTTTGAGCAACTTGCCCTCATTGTGCTCATCTATGAAGCTTTGGTGGTCTGTGGCCTTCATGGAGCTGCCACCGAGTTCTCTGATCTGCTGCTGCATAGCTGNTGCGACTTT] consensusID : consensus_286#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 694 fasta sequence [AACCGTTTAGGTCTTCCCAGCCTCCAGGCTCGCCACGCGTGGGTTCCGGCTGGTCTCTTGACAGTTTGACTGCGAGAAACCTCTGCCAGCAGGCTTTGGNTGCTGCCTGGAACCGGTCAACATGCAATGTTCCGTGCCCCTCATCGCGTTTTAATGATGCTCTACCCGCGAGCGGGCAACCAAACCCCAAGGTTGCCTGCTGGGTCGACTTGACGTATTTTTGCCTGCTTAACCTTGGACCCGTCCCGCTTTGCATAATGCCCGTACTATCAAATATTGGATTTCCATGACGGGCCCCCCATTGAATCCAGACAAAGCCCCCTCTTGATTCTCGGGGTTTCGCATCCAGCGCCTTGGGTACAAGAGCAGGGAATTTGGCTGGTTATCAGTGAGAAGGCCTTTTGCTTTTTTGATATGGACTCCTCCTGCGTAAGTTACCCGTCCTGGTTCGTGGTTTACTCCCGGAAGGGGGCCCTTTCGGGCGAATTCCCCCTGCGGGTCTATTAGCCCCATTGTGGAAAATTTGAGTGGGGGGCCCAAGGCTTACCGGTAATGCTTGCCCCTTAGATCCGTTGTCGCGCCAACGACCAGGTTGGCGATAACGGTTTCTGGCTGCTCGGGTTTGAGCAACTTGCCCTCATTGTGCTTATCTATGAAGCTTTGGTGGTCTGTGAAAAAAAAAAAAAAAAAAAAA] [-] EMBL CA760546 [AACCGTTTAGGTCTTCCCAGCCTCCAGGCTCGCCACGCGTGGGTTCCGGCTGGTCTCTTGACAGTTTGACTGCGAGAAACCTCTGCCAGCAGGCTTTGGNTGCTGCCTGGAACCGGTCAACATGCAATGTTCCGTGCCCCTCATCGCGTTTTAATGATGCTCTACCCGCGAGCGGGCAACCAAACCCCAAGGTTGCCTGCTGGGTCGACTTGACGTATTTTTGCCTGCTTAACCTTGGACCCGTCCCGCTTTGCATAATGCCCGTACTATCAAATATTGGATTTCCATGACGGGCCCCCCATTGAATCCAGACAAAGCCCCCTCTTGATTCTCGGGGTTTCGCATCCAGCGCCTTGGGTACAAGAGCAGGGAATTTGGCTGGTTATCAGTGAGAAGGCCTTTTGCTTTTTTGATATGGACTCCTCCTGCGTAAGTTACCCGTCCTGGTTCGTGGTTTACTCCCGGAAGGGGGCCCTTTCGGGCGAATTCCCCCTGCGGGTCTATTAGCCCCATTGTGGAAAATTTGAGTGGGGGGCCCAAGGCTTACCGGTAATGCTTGCCCCTTAGATCCGTTGTCGCGCCAACGACCAGGTTGGCGATAACGGTTTCTGGCTGCTCGGGTTTGAGCAACTTGCCCTCATTGTGCTTATCTATGAAGCTTTGGTGGTCTGTGAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_286#0 ACGAGACAAGGGGGAACATCACAACATCTGCAACCAGTCTAGGTCTTCCCAGCCTCCAGG 60 consensus_286#1 -------------------------------AACC-GTTTAGGTCTTCCCAGCCTCCAGG 28 **** ** ********************* consensus_286#0 CTCGCCACGCGTGGGTTCCGGCTGGTCTCTTGACAGTTTGACTGCGAGAAACCTCTGCCA 120 consensus_286#1 CTCGCCACGCGTGGGTTCCGGCTGGTCTCTTGACAGTTTGACTGCGAGAAACCTCTGCCA 88 ************************************************************ consensus_286#0 GCAGGCTTTGGCTGCTGCCTGGAACCGGTCAACATGCAATGTTCCGTGCCCCTCATCGCG 180 consensus_286#1 GCAGGCTTTGGNTGCTGCCTGGAACCGGTCAACATGCAATGTTCCGTGCCCCTCATCGCG 148 *********** ************************************************ consensus_286#0 TCTTAATGATGCTCTACCCGCGAGCGGGCAACCAA-CCCCAAGGTTGCTTGCTGGGTCGA 239 consensus_286#1 TTTTAATGATGCTCTACCCGCGAGCGGGCAACCAAACCCCAAGGTTGCCTGCTGGGTCGA 208 * ********************************* ************ *********** consensus_286#0 CTCGACGTATTTTCGCCTGCTTAACCTCGGACCCGTCCCGCTCTGCATAATGCCCGTACT 299 consensus_286#1 CTTGACGTATTTTTGCCTGCTTAACCTTGGACCCGTCCCGCTTTGCATAATGCCCGTACT 268 ** ********** ************* ************** ***************** consensus_286#0 ATCAAATATCGGATTTCCATGACGGACCACCCATCGAATCCAGACAAAGCACCCTCTTGA 359 consensus_286#1 ATCAAATATTGGATTTCCATGACGGGCCCCCCATTGAATCCAGACAAAGCCCCCTCTTGA 328 ********* *************** ** ***** *************** ********* consensus_286#0 TCCTCGGGCTTCCGCATCCAGCGCCTTGGCTACAAGAGCAGGGAATTTGACTGGTAATCA 419 consensus_286#1 TTCTCGGGGTTTCGCATCCAGCGCCTTGGGTACAAGAGCAGGGAATTTGGCTGGTTATCA 388 * ****** ** ***************** ******************* ***** **** consensus_286#0 GTGAGAAGGCATTCTGCTCTTCTGATATGGACTCCTCATGCGTAAGTTACCAGTCTTGCT 479 consensus_286#1 GTGAGAAGGCCTTTTGCTTTTTTGATATGGACTCCTCCTGCGTAAGTTACCCGTCCTGGT 448 ********** ** **** ** *************** ************* *** ** * consensus_286#0 TCGTGGTCTACTCCTGGAAGGGGGCCATTTCGGGCGAATCCCACCTGCGGGTCTATCAGC 539 consensus_286#1 TCGTGGTTTACTCCCGGAAGGGGGCCCTTTCGGGCGAATTCCCCCTGCGGGTCTATTAGC 508 ******* ****** *********** ************ ** ************* *** consensus_286#0 ACCATTGTGGAAAATGTGAGTGGGGGGCACAAGGCTTACCGGTAATGCTTGCCGCTGAGA 599 consensus_286#1 CCCATTGTGGAAAATTTGAGTGGGGGGCCCAAGGCTTACCGGTAATGCTTGCCCCTTAGA 568 ************** ************ ************************ ** *** consensus_286#0 TCCGTCGTCGCGCCAGCGACCCGGTTGGCGATAACGGTTCCTGGCTGCTCGGGTTTGAGC 659 consensus_286#1 TCCGTTGTCGCGCCAACGACCAGGTTGGCGATAACGGTTTCTGGCTGCTCGGGTTTGAGC 628 ***** ********* ***** ***************** ******************** consensus_286#0 AACTTGCCCTCATTGTGCTCATCTATGAAGCTTTGGTGGTCTGTGGCCTTCATGGAGCTG 719 consensus_286#1 AACTTGCCCTCATTGTGCTTATCTATGAAGCTTTGGTGGTCTGTGAAAAAAAAAAAAAAA 688 ******************* ************************* * * consensus_286#0 CCACCGAGTTCTCTGATCTGCTGCTGCATAGCTGNTGCGACTTT 763 consensus_286#1 AAAAAA-------------------------------------- 694 * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||