cluster # 2863

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Oryza sativa
cluster # 2863 cluster # 2863 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2863#0 length = 522 sequences # 1

consensus_2863#1 length = 183 sequences # 1

consensusID : consensus_2863#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 522
fasta sequence

                              [GGACGGACAAGGGGGAGAGCAGCCCCAAAAATAAATCTAGAGTATTATGCCCTCCTCACTGCTAGATCCAGGGCGAGTGGGCAACACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCTCATGGCGGCGGGGCAACTTGGAAAAAGCAAGGTCATCGGGAACTGGGAGGATAAGGCCCAACGTGTGCTCCTCAGCCTCCTCCTTCAATGTGCGTTGTCGATGGTGATGAAGGGGCAACGTGATGGTGAGCCATCATGCTCCTCACCCGATTGTGTGCAGGAATGCTTTGAATGCGTGAAGCATCTGTGAGATTCAGCTCTGCTTGATCGGATTCTAGGGTAACAATGAACAATATCTGCACAACATTGGAGGAACAAACAACAAGCAGTGTCTCTCGTTCAATGTAGTGTTTTGGAGTAAGACATTAAACATTTAAATTGTTCCGTAGAAATAGTGAGAGGGGTTGGGGG]

[+] EMBL CB097113             [GGACGGACAAGGGGGAGAGCAGCCCCAAAAATAAATCTAGAGTATTATGCCCTCCTCACTGCTAGATCCAGGGCGAGTGGGCAACACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCTCATGGCGGCGGGGCAACTTGGAAAAAGCAAGGTCATCGGGAACTGGGAGGATAAGGCCCAACGTGTGCTCCTCAGCCTCCTCCTTCAATGTGCGTTGTCGATGGTGATGAAGGGGCAACGTGATGGTGAGCCATCATGCTCCTCACCCGATTGTGTGCAGGAATGCTTTGAATGCGTGAAGCATCTGTGAGATTCAGCTCTGCTTGATCGGATTCTAGGGTAACAATGAACAATATCTGCACAACATTGGAGGAACAAACAACAAGCAGTGTCTCTCGTTCAATGTAGTGTTTTGGAGTAAGACATTAAACATTTAAATTGTTCCGTAGAAATAGTGAGAGGGGTTGGGGG]




>consensus_2863#0
GGACGGACAAGGGGGAGAGCAGCCCCAAAAATAAATCTAGAGTATTATGCCCTCCTCACT
GCTAGATCCAGGGCGAGTGGGCAACACCAATCTCATAGCCTCCTCTGTCTCATGGCCACC
TCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCTCATGGCGGC
GGGGCAACTTGGAAAAAGCAAGGTCATCGGGAACTGGGAGGATAAGGCCCAACGTGTGCT
CCTCAGCCTCCTCCTTCAATGTGCGTTGTCGATGGTGATGAAGGGGCAACGTGATGGTGA
GCCATCATGCTCCTCACCCGATTGTGTGCAGGAATGCTTTGAATGCGTGAAGCATCTGTG
AGATTCAGCTCTGCTTGATCGGATTCTAGGGTAACAATGAACAATATCTGCACAACATTG
GAGGAACAAACAACAAGCAGTGTCTCTCGTTCAATGTAGTGTTTTGGAGTAAGACATTAA
ACATTTAAATTGTTCCGTAGAAATAGTGAGAGGGGTTGGGGG

consensusID : consensus_2863#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 183
fasta sequence

                              [ACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCNCATGGCGGCGGGGNCAACTTGGAAAAAGCAAGGNCCATCGGGGAACTGGGAAGGNTTAAGGGCCCCANNCGNGTGCCTCCTNAGGACTTCCNTCCTT]

[+] EMBL CA764301             [ACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCNCATGGCGGCGGGGNCAACTTGGAAAAAGCAAGGNCCATCGGGGAACTGGGAAGGNTTAAGGGCCCCANNCGNGTGCCTCCTNAGGACTTCCNTCCTT]




>consensus_2863#1
ACCAATCTCATAGCCTCCTCTGTCTCATGGCCACCTCCTCCGTCTCATGCTTTTGAGGCA
TGGTGACACCCACTGGATCTAGCTCNCATGGCGGCGGGGNCAACTTGGAAAAAGCAAGGN
CCATCGGGGAACTGGGAAGGNTTAAGGGCCCCANNCGNGTGCCTCCTNAGGACTTCCNTC
CTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2863#0      GGACGGACAAGGGGGAGAGCAGCCCCAAAAATAAATCTAGAGTATTATGCCCTCCTCACT 60
consensus_2863#1      ------------------------------------------------------------
                                                                                  

consensus_2863#0      GCTAGATCCAGGGCGAGTGGGCAACACCAATCTCATAGCCTCCTCTGTCTCATGGCCACC 120
consensus_2863#1      -------------------------ACCAATCTCATAGCCTCCTCTGTCTCATGGCCACC 35
                                               ***********************************

consensus_2863#0      TCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCTCATGGCGGC 180
consensus_2863#1      TCCTCCGTCTCATGCTTTTGAGGCATGGTGACACCCACTGGATCTAGCTCNCATGGCGGC 95
                      ************************************************** *********

consensus_2863#0      GGGGC-AACTTGGAAAAAGCAAGGTC-ATCGGG-AACTGGGAGGAT---AAGGCCC--AA 232
consensus_2863#1      GGGGNCAACTTGGAAAAAGCAAGGNCCATCGGGGAACTGGGAAGGNTTAAGGGCCCCANN 155
                      ****  ****************** * ****** ******** *     * *****    

consensus_2863#0      CGTGTGCTCCTCAGCCTCCTCCTTCAATGTGCGTTGTCGATGGTGATGAAGGGGCAACGT 292
consensus_2863#1      CGNGTGCCTCCTNAGGACTTCCNTCCTT-------------------------------- 183
                      ** ****  *       * *** **  *                                

consensus_2863#0      GATGGTGAGCCATCATGCTCCTCACCCGATTGTGTGCAGGAATGCTTTGAATGCGTGAAG 352
consensus_2863#1      ------------------------------------------------------------
                                                                                  

consensus_2863#0      CATCTGTGAGATTCAGCTCTGCTTGATCGGATTCTAGGGTAACAATGAACAATATCTGCA 412
consensus_2863#1      ------------------------------------------------------------
                                                                                  

consensus_2863#0      CAACATTGGAGGAACAAACAACAAGCAGTGTCTCTCGTTCAATGTAGTGTTTTGGAGTAA 472
consensus_2863#1      ------------------------------------------------------------
                                                                                  

consensus_2863#0      GACATTAAACATTTAAATTGTTCCGTAGAAATAGTGAGAGGGGTTGGGGG 522
consensus_2863#1      --------------------------------------------------