These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2868#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 886 fasta sequence [CAAGGAGAAGTGTAAGTTTTGAGGTGAATCGAAGTAATCTGGTCAGGATTTCACACTACGGCTTGGAGTTGGGTCGGTGTTGTTTGAGTCACCTTACTCCATAGATGCCACTTCTATCTTAGAGAAAAGGCTTCCTCTCTTATCAGAAGTGATAGCAGGGCCGTGATGACAGGAGAATTTTTTAGCTTGGGTTGCTCACTTGCTCTAGCCTCGATGGGAGAGTGCACTGCGTAACATCACCAGTATGCCTTTTCCCCAGGTCAAGTTGGTGGCAGAACAGAGATTAGGGCTGCAATGAGTGCATAAAGAAGATTTTCTCAAATCAAATTGGTTACACAACAATGTTAATGTAGGGCAGATTCTTTTAATTAAAGGCACTTATTCGGTTACCTGTTATTTGTTCAAATAAAATCTCAAGAACTGGCTGTTGTTCACGTTTGGAAGAATGCTAAGTTTTTGTTCATCGTCTGTTTCTCCGGAATAGTAACTACAATTTTGGACTCTTTGCCTTCGCAGGGATCAGATTGTGTGAAGCCTTTTATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTAAAGAGATTTTGGAAGAAGAGGAGGATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGNTAGAGCACCAGCATGGTCCAGAGAATCTAAGCCAAAGCTTTGATTAGATGGTGGGGGGGGTTTGGCTGATACACTGATACAGGCATTCCTNCANCAGTCGACACACAACATCACCTTGGTTCTTCTACGAGNGCTTNCGTANTANATCAATTGGTTTTGAGANNGGNGGGACATAAATTTGAGTCAGCAATGGAAGCGTCCAAGACACTTTCGGCGGGAAANAAGTAGTATTTTCCNCAATT] [+] EMBL CA764327 [CAAGGAGAAGTGTAAGTTTTGAGGTGAATCGAAGTAATCTGGTCAGGATTTCACACTACGGCTTGGAGTTGGGTCGGTGTTGTTTGAGTCACCTTACTCCATAGATGCCACTTCTATCTTAGAGAAAAGGCTTCCTCTCTTATCAGAAGTGATAGCAGGGCCGTGATGACAGGAGAATTTTTTAGCTTGGGTTGCTCACTTGCTCTAGCCTCGATGGGAGAGTGCACTGCGTAACATCACCAGTATGCCTTTTCCCCAGGTCAAGTTGGTGGCAGAACAGAGATTAGGGCTGCAATGAGTGCATAAAGAAGATTTTCTCAAATCAAATTGGTTACACAACAATGTTAATGTAGGGCAGATTCTTTTAATTAAAGGCACTTATTCGGTTACCTGTTATTTGTTCAAATAAAATCTCAAGAACTGGCTGTTGTTCACGTTTGGAAGAATGCTAAGTTTTTGTTCATCGTCTGTTTCTCCGGAATAGTAACTACAATTTTGGACTCTTTGCCTTCGCAGGGATCAGATTGTGTGAAGCCTTTTATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTAAAGAGATTTTGGAAGAAGAGGAGGATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGNTAGAGCACCAGCATGGTCCAGAGAATCTAAGCCAAAGCTTTGATTAGATGGTGGGGGGGGTTTGGCTGATACACTGATACAGGCATTCCTNCANCAGTCGACACACAACATCACCTTGGTTCTTCTACGAGNGCTTNCGTANTANATCAATTGGTTTTGAGANNGGNGGGACATAAATTTGAGTCAGCAATGGAAGCGTCCAAGACACTTTCGGCGGGAAANAAGTAGTATTTTCCNCAATT] consensusID : consensus_2868#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 838 fasta sequence [TCGCCGCGCCGCCGCTTGCTCCCGTTCTCGCCGTCGCAGCCCGGGAAGACGAGAGAGTGTGGCCGCCGCCTGCTTCTTCTCTAGCGCTACACCTCGATGGGTCAAGGTCTGAGCCAGCCCGCGCAGGCGGTGGAGGAGCCTTCTCCGCCTGCCGTCGAGGCGGCGCCGTCGTCGTCGCCGTCTCCTGCCCCGGCGCCATCTTCCCTCGAGGCGCTCGCCGCAGAGGCTATGTCATTTGACGAGGATGGCAATGAGTCAATTGATGTGAAGGTACAGAAAGCACTGGACTGTCCATGTGTAGCTGAGTTGAAAAATGGTCCTTGTGGAAGTCAATTTGTTGATGCGTTCTCTTGCTTCCTGAAAAGCACAGAAGAGGAAAAGGGATCAGATTGTGTGAAGCCTTTTATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTAAAGAGATTTTGGAAGAAGAGGAGAATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGTTAGAGCACCAGCATGGTCCAGAGAATCTAAGCCAAAGCTTTGATTAGATGGTGTGGTGTTTGGCTGATACACTGATACAGGCATTCCTCCACCAGTCGACACACAACATCACCTTGTTTCTTCTACGAGTGCTTCCGTATTAGATCAATTGTTTTTGAGATGGTGGTACATAAATTTGAGTCAGCAATGAAGCGTCCAAGACACTTCGGCGGAAATAAGTAGTATTTCCACAATTTAATTTACAACAAACACTTACTGTTCAAATGGAGAACTGACGAACTTGTAATATGACGTCAGTTCTAGACGGATTATACGAGTGGGTAAAGATC] [+] EMBL AK072980 [TCGCCGCGCCGCCGCTTGCTCCCGTTCTCGCCGTCGCAGCCCGGGAAGACGAGAGAGTGTGGCCGCCGCCTGCTTCTTCTCTAGCGCTACACCTCGATGGGTCAAGGTCTGAGCCAGCCCGCGCAGGCGGTGGAGGAGCCTTCTCCGCCTGCCGTCGAGGCGGCGCCGTCGTCGTCGCCGTCTCCTGCCCCGGCGCCATCTTCCCTCGAGGCGCTCGCCGCAGAGGCTATGTCATTTGACGAGGATGGCAATGAGTCAATTGATGTGAAGGTACAGAAAGCACTGGACTGTCCATGTGTAGCTGAGTTGAAAAATGGTCCTTGTGGAAGTCAATTTGTTGATGCGTTCTCTTGCTTCCTGAAAAGCACAGAAGAGGAAAAGGGATCAGATTGTGTGAAGCCTTTTATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTAAAGAGATTTTGGAAGAAGAGGAGAATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGTTAGAGCACCAGCATGGTCCAGAGAATCTAAGCCAAAGCTTTGATTAGATGGTGTGGTGTTTGGCTGATACACTGATACAGGCATTCCTCCACCAGTCGACACACAACATCACCTTGTTTCTTCTACGAGTGCTTCCGTATTAGATCAATTGTTTTTGAGATGGTGGTACATAAATTTGAGTCAGCAATGAAGCGTCCAAGACACTTCGGCGGAAATAAGTAGTATTTCCACAATTTAATTTACAACAAACACTTACTGTTCAAATGGAGAACTGACGAACTTGTAATATGACGTCAGTTCTAGACGGATTATACGAGTGGGTAAAGATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2868#0 CAAGGAGAAGTGTAAGTTTTGAGGTGAATCGAAGTAATCTGGTCAGGATTTCACACTACG 60 consensus_2868#1 ------------------------------------------------------------ consensus_2868#0 GCTTGGAGTTGGGTCGGTGTTGTTTGAGTCACCTTACTCCATAGATGCCACTTCTATCTT 120 consensus_2868#1 --------------------------------------------------------TCGC 4 ** consensus_2868#0 AGAGAAAAGGCTTCCTCTCTTATCAGAAGTGATAGCAGGGCCGTGATGACAGGAGAATTT 180 consensus_2868#1 CGCGCCGCCGCTTGCTCCCGTTCTCGCCGTCGCAGC----CCGGGAAGACGAGAGAGTGT 60 * * **** *** * * * ** *** *** ** *** **** * * consensus_2868#0 TTTAGCT--TGGGTTGCTCACTTGCTCTA-GCCTCGATGGGAGAG----TGCACTGCGTA 233 consensus_2868#1 GGCCGCCGCCTGCTTCTTCTCTAGCGCTACACCTCGATGGGTCAAGGTCTGAGCCAGCCC 120 ** * ** ** ** ** *** ********** * ** * consensus_2868#0 ACATCACCAGT--ATGCCTTTTCCCCAGGTCAAGTTGGTGGCAGAACAGAGATTAGGGCT 291 consensus_2868#1 GCGCAGGCGGTGGAGGAGCCTTCTCCGCCTGCCGTCGA-GGCGGCGCCGTCGTCGTCGCC 179 * * ** * * *** ** * ** * *** * * * * ** consensus_2868#0 GCAATGAGTGCATAAAGAAGATTTTCTCAAATCAAATTGGTTACACAA-CAATGTTAATG 350 consensus_2868#1 GTCTCCTGCCCCGGCGCCATCTTCCCTCGAGGCG--CTCGCCGCAGAGGCTATGTCATTT 237 * * * * ** *** * * * * ** * * **** * * consensus_2868#0 TAGGGCAGATTCTTTTAATTAA---AGGCACTTATTCGGTTACCTGTTATTTGTTCAAAT 407 consensus_2868#1 GACGAGGATGGCAATGAGTCAATTGATGTGAAGGTACAGAAAGCACTGGACTGTCCATGT 297 * * * * * * ** * * * * * * * * *** ** * consensus_2868#0 AAAATCTCAAGAACTGGCTGTTGTTCACGTTTGGAAGAATGCTAAGTTTTTGTT-CATCG 466 consensus_2868#1 GTAGCT----GAGTTGAAAAATGGTC-CTTGTGGAAG----TCAATTTGTTGATGCGTTC 348 * ** ** ** ** * * ****** ** ** *** * * * consensus_2868#0 TCTGTTTCTCCGGAATAGTAACTACAATTTTGGACTCTTTGCCTTCGCAGGGATCAGATT 526 consensus_2868#1 TCTTGCTTCCTGAAA-----AGCACAGAAGAGGA------------AAAGGGATCAGATT 391 *** * * * ** * *** *** ************ consensus_2868#0 GTGTGAAGCCTTTTATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTA 586 consensus_2868#1 GTGTGAAGCCTTTTATCGCACTGCAGGACTGCATCAAAATCAATCCAGAGGCGTTTTCTA 451 ************************************************************ consensus_2868#0 AAGAGATTTTGGAAGAAGAGGAGGATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGNTA 646 consensus_2868#1 AAGAGATTTTGGAAGAAGAGGAGAATGACGAGGAGGCTGAGAAGTCCAACCTGAAAGTTA 511 *********************** ********************************* ** consensus_2868#0 GAGCACCAGCATGGTCCAGAGAATCTAAGCCAAAGCTTTGATTAGATGGTGGGGGGGGTT 706 consensus_2868#1 GAGCACCAGCATGGTCCAGAGAATCTAAGCCAAAGCTTTGATTAGATGGTGTGGT--GTT 569 *************************************************** ** *** consensus_2868#0 TGGCTGATACACTGATACAGGCATTCCTNCANCAGTCGACACACAACATCACCTTGGTTC 766 consensus_2868#1 TGGCTGATACACTGATACAGGCATTCCTCCACCAGTCGACACACAACATCACCTTGTTTC 629 **************************** ** ************************ *** consensus_2868#0 TTCTACGAGNGCTTNCGTANTANATCAATTGGTTTTGAGANNGGNGGGACATAAATTTGA 826 consensus_2868#1 TTCTACGAGTGCTTCCGTATTAGATCAATTGTTTTTGAGATGG-TGGTACATAAATTTGA 688 ********* **** **** ** ******** ******** * ** ************ consensus_2868#0 GTCAGCAATGGAAGCGTCCAAGACACTTTCGGCGGGAAANAAGTAGTATTTTCCNCAATT 886 consensus_2868#1 GTCAGCAATG-AAGCGTCCAAGACACTT-CGGCGG-AAATAAGTAGTATTT-CCACAATT 744 ********** ***************** ****** *** *********** ** ***** consensus_2868#0 ------------------------------------------------------------ consensus_2868#1 TAATTTACAACAAACACTTACTGTTCAAATGGAGAACTGACGAACTTGTAATATGACGTC 804 consensus_2868#0 ---------------------------------- consensus_2868#1 AGTTCTAGACGGATTATACGAGTGGGTAAAGATC 838 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||