These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_2871#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1358 fasta sequence [TGTCTATCTTTTTTGTGTGTAGTACATAAATGCAAATAATGCGTCTCTTTTCTCTCATCATAGCCTTTCGATCGGTAGAAGCTAGAATGCCAGAGATGGTGAGGGCGTCAACAGCCATCTCTGCGGGAAGAGTCGTCGTCGTCGCCGGAGCGGCGGCGTTGGTGGTTGTCTTGCTGTGCGCGGCGCCGGCGCCGGCGGCCGTGGAAGCTGTCCCGGCCGGCGCCGAGGTCTCCGAGTTCCCGGGGTTCGACGGCGACCTCCCCTCCAAGCACTACGCTGGGTACATAACTGTTGGACATCAGCCGCTAAAGAGACATATGTATTACTATTTTGCCACTTCCGAAAGGAACTCAACCACTGACCCTGTCATCATCTGGATAAATGGTGGCCCAGCATGTTCAGGATCTAGTGCCTTTTTGCATTCAATCGGACCATTGAAAATAGAGGGACCCATGATTCATGCCAGAGATGAGCCAAGGACCAAGTTAAATCCTTTCTCATGGACCAAGATGTCTAGTGTCCTTTTGGTTGACTCACCAGCAGGAGTGGGCTATTCTTATTCTGAAAATGAAGATGACTATGTAACAAATGATACAAGCAGAGTATTGGACCTGTATGATTTTTTATCGAAGTGGTTTTCTGAATATCTTGAGTTTCTATCAAATCCTTTCTACATTGCCGGTTGCTCCTATAGTGGCGTGATAGTACCAGTTCTTGCACAAGAAATTCTGAAGCGAAATGAAGACAATGGCAGAATAAAGATAAATTTTAAGGGTTATTCACTGTGTAATCCAGCTGTTGATGTAGAAATTGAAAATAACGCGTTTGTACCTTATGCATTTCGAATGGGATTGATTTCAGATGAATTATATCAGAATTTAGTTAGTACGTGCAATGGGAAGTACTGGAATAACAAAGGCCCATCTTGTCTAGCAAACTTGGAACAGTTTCATAAGAAGCCAATGAGGAATATGATTTTGGTCAGATGTTTGAGCTCCTTTCCGAAAGCTCCGAGTATGGTTTAGAATGCAATTGGAGATCATGCCTTGCTTGTCCCATTTTCTGCAACTTTAGAGTGGCTAAAAACATTGAACTATAAGGAAATTGAGAAATGGCATCCATGGTTTGTAGAGAAACAAATTGCAGGGTATTCAGTTCGGTATGAAAATAATATACTATTTGCAACAATCAAGGGAGCTGGCCATGTCCCATCAGATTACCTGCCATTTGAAGTATTTGTTGCCTATCAAAGATGGATAGATGGTTCTGATTCTTTATAGTAGTTTGACTAATGTTGTGTCATTTGTACATGAATAATCTTAACTCAGTACCAATATACAATGGTGATATAACCTCTG] [+] EMBL AK107401 [TGTCTATCTTTTTTGTGTGTAGTACATAAATGCAAATAATGCGTCTCTTTTCTCTCATCATAGCCTTTCGATCGGTAGAAGCTAGAATGCCAGAGATGGTGAGGGCGTCAACAGCCATCTCTGCGGGAAGAGTCGTCGTCGTCGCCGGAGCGGCGGCGTTGGTGGTTGTCTTGCTGTGCGCGGCGCCGGCGCCGGCGGCCGTGGAAGCTGTCCCGGCCGGCGCCGAGGTCTCCGAGTTCCCGGGGTTCGACGGCGACCTCCCCTCCAAGCACTACGCTGGGTACATAACTGTTGGACATCAGCCGCTAAAGAGACATATGTATTACTATTTTGCCACTTCCGAAAGGAACTCAACCACTGACCCTGTCATCATCTGGATAAATGGTGGCCCAGCATGTTCAGGATCTAGTGCCTTTTTGCATTCAATCGGACCATTGAAAATAGAGGGACCCATGATTCATGCCAGAGATGAGCCAAGGACCAAGTTAAATCCTTTCTCATGGACCAAGATGTCTAGTGTCCTTTTGGTTGACTCACCAGCAGGAGTGGGCTATTCTTATTCTGAAAATGAAGATGACTATGTAACAAATGATACAAGCAGAGTATTGGACCTGTATGATTTTTTATCGAAGTGGTTTTCTGAATATCTTGAGTTTCTATCAAATCCTTTCTACATTGCCGGTTGCTCCTATAGTGGCGTGATAGTACCAGTTCTTGCACAAGAAATTCTGAAGCGAAATGAAGACAATGGCAGAATAAAGATAAATTTTAAGGGTTATTCACTGTGTAATCCAGCTGTTGATGTAGAAATTGAAAATAACGCGTTTGTACCTTATGCATTTCGAATGGGATTGATTTCAGATGAATTATATCAGAATTTAGTTAGTACGTGCAATGGGAAGTACTGGAATAACAAAGGCCCATCTTGTCTAGCAAACTTGGAACAGTTTCATAAGAAGCCAATGAGGAATATGATTTTGGTCAGATGTTTGAGCTCCTTTCCGAAAGCTCCGAGTATGGTTTAGAATGCAATTGGAGATCATGCCTTGCTTGTCCCATTTTCTGCAACTTTAGAGTGGCTAAAAACATTGAACTATAAGGAAATTGAGAAATGGCATCCATGGTTTGTAGAGAAACAAATTGCAGGGTATTCAGTTCGGTATGAAAATAATATACTATTTGCAACAATCAAGGGAGCTGGCCATGTCCCATCAGATTACCTGCCATTTGAAGTATTTGTTGCCTATCAAAGATGGATAGATGGTTCTGATTCTTTATAGTAGTTTGACTAATGTTGTGTCATTTGTACATGAATAATCTTAACTCAGTACCAATATACAATGGTGATATAACCTCTG] consensusID : consensus_2871#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 591 fasta sequence [CCAAAGAAGCCAATGAGGAATATGATTTTGGTCAGATGTTTGAGCTCCTTTCCGAAAGCTCCGAGTATGGTTTAGAATGCAATATTGAAATATTACAAAAGTGGAAGAGATGCCCCAACTTTATCCAATACACAAGAGATATTCCAACTTTAACAGAGTATCACTTAAATGTAACATCCAAAGGTTACAGAGTGTTTTTATATAGTGGAGATCATGCCTTGCTTGTCCCATTTTCTGCAACTTTAGAGTGGCTAAAAACATTGAACTATAAGGAAATTGAGAAATGGCATCCATGGTTTGTAGAGAAACAAATTGCAGGGTATTCAGTTCGGTATGAAAATAATATACTATTTGCAACAATCAAGGGAGCTGGCCATGTCCCATCAGATTACCTGCCATTTGAAGTATTTGTTGCCTATCAAAGATGGATAGATGGTTCTGATTCTTTATAGTAGTTTGACTAATGTTGTGTCATTTGTACATGAATAATCTTAACTCAGTACCAATATACAATGGTGATATAACCCTCTGTTTTGAGGCCAATGTGAAACAGTTTCAGGCAATAGATGTGCATGATACATGACTAGTTCT] [+] EMBL CA764351 [CCAAAGAAGCCAATGAGGAATATGATTTTGGTCAGATGTTTGAGCTCCTTTCCGAAAGCTCCGAGTATGGTTTAGAATGCAATATTGAAATATTACAAAAGTGGAAGAGATGCCCCAACTTTATCCAATACACAAGAGATATTCCAACTTTAACAGAGTATCACTTAAATGTAACATCCAAAGGTTACAGAGTGTTTTTATATAGTGGAGATCATGCCTTGCTTGTCCCATTTTCTGCAACTTTAGAGTGGCTAAAAACATTGAACTATAAGGAAATTGAGAAATGGCATCCATGGTTTGTAGAGAAACAAATTGCAGGGTATTCAGTTCGGTATGAAAATAATATACTATTTGCAACAATCAAGGGAGCTGGCCATGTCCCATCAGATTACCTGCCATTTGAAGTATTTGTTGCCTATCAAAGATGGATAGATGGTTCTGATTCTTTATAGTAGTTTGACTAATGTTGTGTCATTTGTACATGAATAATCTTAACTCAGTACCAATATACAATGGTGATATAACCCTCTGTTTTGAGGCCAATGTGAAACAGTTTCAGGCAATAGATGTGCATGATACATGACTAGTTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_2871#0 TGTCTATCTTTTTTGTGTGTAGTACATAAATGCAAATAATGCGTCTCTTTTCTCTCATCA 60 consensus_2871#1 ------------------------------------------------------------ consensus_2871#0 TAGCCTTTCGATCGGTAGAAGCTAGAATGCCAGAGATGGTGAGGGCGTCAACAGCCATCT 120 consensus_2871#1 ------------------------------------------------------------ consensus_2871#0 CTGCGGGAAGAGTCGTCGTCGTCGCCGGAGCGGCGGCGTTGGTGGTTGTCTTGCTGTGCG 180 consensus_2871#1 ------------------------------------------------------------ consensus_2871#0 CGGCGCCGGCGCCGGCGGCCGTGGAAGCTGTCCCGGCCGGCGCCGAGGTCTCCGAGTTCC 240 consensus_2871#1 ------------------------------------------------------------ consensus_2871#0 CGGGGTTCGACGGCGACCTCCCCTCCAAGCACTACGCTGGGTACATAACTGTTGGACATC 300 consensus_2871#1 ------------------------------------------------------------ consensus_2871#0 AGCCGCTAAAGAGACATATGTATTACTATTTTGCCACTTCCGAAAGGAACTCAACCACTG 360 consensus_2871#1 ------------------------------------------------------------ consensus_2871#0 ACCCTGTCATCATCTGGATAAATGGTGGCCCAGCATGTTCAGGATCTAGTGCCTTTTTGC 420 consensus_2871#1 ------------------------------------------------------------ consensus_2871#0 ATTCAATCGGACCATTGAAAATAGAGGGACCCATGATTCATGCCAGAGATGAGCCAAGGA 480 consensus_2871#1 ------------------------------------------------------------ consensus_2871#0 CCAAGTTAAATCCTTTCTCATGGACCAAGATGTCTAGTGTCCTTTTGGTTGACTCACCAG 540 consensus_2871#1 ------------------------------------------------------------ consensus_2871#0 CAGGAGTGGGCTATTCTTATTCTGAAAATGAAGATGACTATGTAACAAATGATACAAGCA 600 consensus_2871#1 ------------------------------------------------------------ consensus_2871#0 GAGTATTGGACCTGTATGATTTTTTATCGAAGTGGTTTTCTGAATATCTTGAGTTTCTAT 660 consensus_2871#1 ------------------------------------------------------------ consensus_2871#0 CAAATCCTTTCTACATTGCCGGTTGCTCCTATAGTGGCGTGATAGTACCAGTTCTTGCAC 720 consensus_2871#1 ------------------------------------------------------------ consensus_2871#0 AAGAAATTCTGAAGCGAAATGAAGACAATGGCAGAATAAAGATAAATTTTAAGGGTTATT 780 consensus_2871#1 ------------------------------------------------------------ consensus_2871#0 CACTGTGTAATCCAGCTGTTGATGTAGAAATTGAAAATAACGCGTTTGTACCTTATGCAT 840 consensus_2871#1 ------------------CCAAAGAAGCCAATGAGGAATATGATTTTG---GTCAGATGT 39 * * ** * *** * * * **** * * * consensus_2871#0 TTCGAATGGGATTGATTTCAGATGAATTATATCAGAATTTAGTTAGTACGTGCAATGGGA 900 consensus_2871#1 TT------GAGCTCCTTTCCGAAAGCTCCGAGTATGGTTTAG--AATGCA-ATATTGAAA 90 ** * * **** ** * * * ***** * * * * ** * consensus_2871#0 -AGTACTGGAATAACAAAGGCCCATCTTGTCTAGCAAACTTGGAACAGTTTCATAAGAAG 959 consensus_2871#1 TATTACAAAAGTGGAAGAGATGCCCCAACTTTATCCAATACACAAGAG-------ATATT 143 * *** * * * ** * * * ** * ** ** ** * * consensus_2871#0 CCAATGAGGAATATGATTTTGGTCAGATGTTTGAGCTCCTTTCCGAAAGCTCCGAGTATG 1019 consensus_2871#1 CCAACTTT-AACAGAGTATCACTTAAATGTAACA-------TCCAAAGGTTAC-AGAGTG 194 **** ** * * * * * **** * *** ** * * * ** ** consensus_2871#0 GTTTAGAATGCAATTGGAGATCATGCCTTGCTTGTCCCATTTTCTGCAACTTTAGAGTGG 1079 consensus_2871#1 TTTTTATAT---AGTGGAGATCATGCCTTGCTTGTCCCATTTTCTGCAACTTTAGAGTGG 251 *** ** * ********************************************** consensus_2871#0 CTAAAAACATTGAACTATAAGGAAATTGAGAAATGGCATCCATGGTTTGTAGAGAAACAA 1139 consensus_2871#1 CTAAAAACATTGAACTATAAGGAAATTGAGAAATGGCATCCATGGTTTGTAGAGAAACAA 311 ************************************************************ consensus_2871#0 ATTGCAGGGTATTCAGTTCGGTATGAAAATAATATACTATTTGCAACAATCAAGGGAGCT 1199 consensus_2871#1 ATTGCAGGGTATTCAGTTCGGTATGAAAATAATATACTATTTGCAACAATCAAGGGAGCT 371 ************************************************************ consensus_2871#0 GGCCATGTCCCATCAGATTACCTGCCATTTGAAGTATTTGTTGCCTATCAAAGATGGATA 1259 consensus_2871#1 GGCCATGTCCCATCAGATTACCTGCCATTTGAAGTATTTGTTGCCTATCAAAGATGGATA 431 ************************************************************ consensus_2871#0 GATGGTTCTGATTCTTTATAGTAGTTTGACTAATGTTGTGTCATTTGTACATGAATAATC 1319 consensus_2871#1 GATGGTTCTGATTCTTTATAGTAGTTTGACTAATGTTGTGTCATTTGTACATGAATAATC 491 ************************************************************ consensus_2871#0 TTAACTCAGTACCAATATACAATGGTGATATAACC-TCTG-------------------- 1358 consensus_2871#1 TTAACTCAGTACCAATATACAATGGTGATATAACCCTCTGTTTTGAGGCCAATGTGAAAC 551 *********************************** **** consensus_2871#0 ---------------------------------------- consensus_2871#1 AGTTTCAGGCAATAGATGTGCATGATACATGACTAGTTCT 591 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||