These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_288#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 861 fasta sequence [ACGATATGAACTTATTCGAGAAAAAATTGGGGAAAACATACAGTAGAATTTTGTATCAGGAAACAGTAACAAATTCACAACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGCAGCCGCGACGCATCCAAACTCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCTCCCGATCTCACCGCGAGCCAGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTCCGCCGCCGCCGCCGCCGTTGGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCAGTACGTGGTGCTTCGGCGCGACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCANGGGTGCCACGCCGCCGTTGCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGCCTACTGCGGGCCAGACAACCTCGACCGGATGCACAAGGTAACACTGGAGGGTGAAGGAGAGACACANCTTGAGAACCTGGCTGAGAAGCTGGAAACCCGCTGTTGTCCGCACAAGGTGTGGATAGAGCAGCCAGAGAACATACCAACTTGCATAGCGACTGCGGCGGTGCCCAAAGTACAGGTTTCTTCAATCTTCAAGAAAGCTCAAGCTTTGGTAAATGAAGCACTATTTTAGGATCCCTCAAAATTCAAAACTTTTCCAAGCCAATCCGGCTTTTCAATAACTGGGNTTTAACGTCAAAAGGGTGGCATTTGGAAGGTCCAACCAGAATCTTGCAGCCCAGGAACTGGCTATAACCCGGTTCCATTTTTTGGGAATATATGGACCGGGCCTTGTTTTTGCCAAAANAAAAAAAAANNNNNNTNNATTTAATTTTTATC] [+] EMBL BE040613 [ACGATATGAACTTATTCGAGAAAAAATTGGGGAAAACATACAGTAGAATTTTGTATCAGGAAACAGTAACAAATTCACAACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGCAGCCGCGACGCATCCAAACTCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCTCCCGATCTCACCGCGAGCCAGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTCCGCCGCCGCCGCCGCCGTTGGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCAGTACGTGGTGCTTCGGCGCGACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCANGGGTGCCACGCCGCCGTTGCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGCCTACTGCGGGCCAGACAACCTCGACCGGATGCACAAGGTAACACTGGAGGGTGAAGGAGAGACACANCTTGAGAACCTGGCTGAGAAGCTGGAAACCCGCTGTTGTCCGCACAAGGTGTGGATAGAGCAGCCAGAGAACATACCAACTTGCATAGCGACTGCGGCGGTGCCCAAAGTACAGGTTTCTTCAATCTTCAAGAAAGCTCAAGCTTTGGTAAATGAAGCACTATTTTAGGATCCCTCAAAATTCAAAACTTTTCCAAGCCAATCCGGCTTTTCAATAACTGGGNTTTAACGTCAAAAGGGTGGCATTTGGAAGGTCCAACCAGAATCTTGCAGCCCAGGAACTGGCTATAACCCGGTTCCATTTTTTGGGAATATATGGACCGGGCCTTGTTTTTGCCAAAANAAAAAAAAANNNNNNTNNATTTAATTTTTATC] consensusID : consensus_288#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 773 fasta sequence [ACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGCAGCCGCGACGCATCCAAACTCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCTCCCGATCTCACCGCGAGCCAGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTCCGCCGCCGCCGCCGCCGTTGGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCAGTACGTGGTGCTTCGGCGCGACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCAGGGGTGCCACGCCGCCGTTGCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGCCTACTGCGGGCCAGACAACCTCGACCGGATGCACAAGGTAACACTGGAGGTGAAAGGAGAGACACAACTGAAGAACCTGGCTGAGAAGCTGGAAACCGCTGGTGTCCGGCACAAGGTGTGGATAGAGCAGCCAGAGAACATACCAACTTGCATAGCGACTGCGCCGTGCCCAAAGTCACAGGTTTCTTCATTCTTCAAGAAGCTCAAGCTTTGTAAATGAGCCACTATTTAGGATCCTCAAAATTCAAAACTTTGCAAGCAATCTGTCTTTTCATTACTGGTTTTATCGTCAAAGGTTGGCATTAGAAGTCACACCAGATACTGCAGCCATGTACTGTCTATACCTGTTCCATTTTTGGATTTATTGATCGTGCATGTTTTTGCCATGGGACCATGGTGGCGGGTTGATGAAGCAATCAGTGAGAAATTGAC] [+] EMBL AK108075 [ACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGCAGCCGCGACGCATCCAAACTCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCTCCCGATCTCACCGCGAGCCAGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTCCGCCGCCGCCGCCGCCGTTGGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCAGTACGTGGTGCTTCGGCGCGACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCAGGGGTGCCACGCCGCCGTTGCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGCCTACTGCGGGCCAGACAACCTCGACCGGATGCACAAGGTAACACTGGAGGTGAAAGGAGAGACACAACTGAAGAACCTGGCTGAGAAGCTGGAAACCGCTGGTGTCCGGCACAAGGTGTGGATAGAGCAGCCAGAGAACATACCAACTTGCATAGCGACTGCGCCGTGCCCAAAGTCACAGGTTTCTTCATTCTTCAAGAAGCTCAAGCTTTGTAAATGAGCCACTATTTAGGATCCTCAAAATTCAAAACTTTGCAAGCAATCTGTCTTTTCATTACTGGTTTTATCGTCAAAGGTTGGCATTAGAAGTCACACCAGATACTGCAGCCATGTACTGTCTATACCTGTTCCATTTTTGGATTTATTGATCGTGCATGTTTTTGCCATGGGACCATGGTGGCGGGTTGATGAAGCAATCAGTGAGAAATTGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_288#0 ACGATATGAACTTATTCGAGAAAAAATTGGGGAAAACATACAGTAGAATTTTGTATCAGG 60 consensus_288#1 ------------------------------------------------------------ consensus_288#0 AAACAGTAACAAATTCACAACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGC 120 consensus_288#1 -------------------ACCATGCTGTCCTTGCTTCCCCTTCGCTTGCCGTTCTCCGC 41 ***************************************** consensus_288#0 AGCCGCGACGCATCCAAACTCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCT 180 consensus_288#1 AGCCGCGACGCATCCAAACTCCACTTTCCTCCTCCAACGCGCCGTTAGGCTTCCCATCCT 101 ************************************************************ consensus_288#0 CCCGATCTCACCGCGAGCCAGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTC 240 consensus_288#1 CCCGATCTCACCGCGAGCCAGCATGAGCGCCACCGCCGCCACGCCGGATTCCTCGGCTTC 161 ************************************************************ consensus_288#0 CGCCGCCGCCGCCGCCGTTGGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCA 300 consensus_288#1 CGCCGCCGCCGCCGCCGTTGGCGGGGAAGTGGGGAAGGAGGCGGAGGATGTGGTGGTGCA 221 ************************************************************ consensus_288#0 GTACGTGGTGCTTCGGCGCGACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCA 360 consensus_288#1 GTACGTGGTGCTTCGGCGCGACCTGGCGGACGCGTGGCCGCTGGGGAGCGTGGTGGCGCA 281 ************************************************************ consensus_288#0 NGGGTGCCACGCCGCCGTTGCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGC 420 consensus_288#1 GGGGTGCCACGCCGCCGTTGCCGCCGTGTGGGCGCACCGCGACCACCCGGACACTGCCGC 341 *********************************************************** consensus_288#0 CTACTGCGGGCCAGACAACCTCGACCGGATGCACAAGGTAACACTGGAGGGTGAAGGAGA 480 consensus_288#1 CTACTGCGGGCCAGACAACCTCGACCGGATGCACAAGGTAACACTGGAGGTGAAAGGAGA 401 ************************************************** ******* consensus_288#0 GACACANCTTGAGAACCTGGCTGAGAAGCTGGAAACCCGCTGTTGTCCG-CACAAGGTGT 539 consensus_288#1 GACACAACTGAAGAACCTGGCTGAGAAGCTGGAAACC-GCTGGTGTCCGGCACAAGGTGT 460 ****** ** ************************** **** ****** ********** consensus_288#0 GGATAGAGCAGCCAGAGAACATACCAACTTGCATAGCGACTGCGGCGGTGCCCAAAGT-A 598 consensus_288#1 GGATAGAGCAGCCAGAGAACATACCAACTTGCATAGCGACTGCG-CCGTGCCCAAAGTCA 519 ******************************************** * *********** * consensus_288#0 CAGGTTTCTTCAATCTTCAAGAAAGCTCAAGCTTTGGTAAATGAAGCACTATTTTAGGAT 658 consensus_288#1 CAGGTTTCTTCATTCTTCAAGAA-GCTCAAGCTTTG-TAAATGAGCCACTATTT-AGGAT 576 ************ ********** ************ ******* ******** ***** consensus_288#0 CCCTCAAAATTCAAAACTTTTCCAAGCCAATCCGGCTTTTCAATAACTGGGNTTTAACGT 718 consensus_288#1 CC-TCAAAATTCAAAACTTTGCAAG--CAATCTGTCTTTTCATTACT--GGTTTTATCGT 631 ** ***************** * * ***** * ******* ** ** **** *** consensus_288#0 CAAAAGGGTGGCATTTGGAAGGTCCAACCAGAATCTTGCAGCCCAGGAACTGGCTATAAC 778 consensus_288#1 CAAA-GGTTGGCATTAGAA--GTCACACCAGA-TACTGCAGCC-ATGTACTGTCTATA-- 684 **** ** ******* * * *** ****** * ******* * * **** ***** consensus_288#0 CCGGTTCCATTTTTTGGGAATATATGGACCGGGCCTTGTTTTTGCCAAAANAAAAAAAAA 838 consensus_288#1 CCTGTTCCATTTTT---GGATTTATTGATCGTGCAT-GTTTTTGCCATGGGACCATGGT- 739 ** *********** * ** *** ** ** ** * ********** * * consensus_288#0 NNNNNNTNNATTTAATTTTTATC----------- 861 consensus_288#1 GGCGGGTTGATGAAGCAATCAGTGAGAAATTGAC 773 * ** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||