cluster # 2886

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Oryza sativa
cluster # 2886 cluster # 2886 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_2886#0 length = 438 sequences # 1

consensus_2886#1 length = 282 sequences # 1

consensusID : consensus_2886#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 438
fasta sequence

                              [AACCTCAAGAGGTGCATGGACGCGCACGNGACTACTACGCCCCCGTGCTCCGCGCCGAGCAGGCCGTCAACGACCACGCCGACGCCGCCATCGCCGCCGACAAGGCAAAGGAAGGCGGGGAGAAGAAGCTAGATGCGGTGGCCCAGGAGGCCGCGTCCGCCGCCGACGAGAAGAAACAACAGGTTGAGGAGAAGTCGTCGTCGTCTTCTTCCTCGCCGACCACCACCATTGACGNGAGAAAGGAGAAAGAAGTGGTGACTGAAAAGGCTGAATTCCTGAGTAACTTAACAGTTTTTTTCAAATTTNGGTTAAGCAATTGGAGTTTATGATCCTNACTGGTGATTGATATGAAGCAGAGCTAACTATATTATAGATTTNGTCAAGCCAAATTTTTTGGGNACCCTTTTGTGGGGGGGGAAANAAAGCCGATTACGGGTA]

[+] EMBL C74183               [AACCTCAAGAGGTGCATGGACGCGCACGNGACTACTACGCCCCCGTGCTCCGCGCCGAGCAGGCCGTCAACGACCACGCCGACGCCGCCATCGCCGCCGACAAGGCAAAGGAAGGCGGGGAGAAGAAGCTAGATGCGGTGGCCCAGGAGGCCGCGTCCGCCGCCGACGAGAAGAAACAACAGGTTGAGGAGAAGTCGTCGTCGTCTTCTTCCTCGCCGACCACCACCATTGACGNGAGAAAGGAGAAAGAAGTGGTGACTGAAAAGGCTGAATTCCTGAGTAACTTAACAGTTTTTTTCAAATTTNGGTTAAGCAATTGGAGTTTATGATCCTNACTGGTGATTGATATGAAGCAGAGCTAACTATATTATAGATTTNGTCAAGCCAAATTTTTTGGGNACCCTTTTGTGGGGGGGGAAANAAAGCCGATTACGGGTA]




>consensus_2886#0
AACCTCAAGAGGTGCATGGACGCGCACGNGACTACTACGCCCCCGTGCTCCGCGCCGAGC
AGGCCGTCAACGACCACGCCGACGCCGCCATCGCCGCCGACAAGGCAAAGGAAGGCGGGG
AGAAGAAGCTAGATGCGGTGGCCCAGGAGGCCGCGTCCGCCGCCGACGAGAAGAAACAAC
AGGTTGAGGAGAAGTCGTCGTCGTCTTCTTCCTCGCCGACCACCACCATTGACGNGAGAA
AGGAGAAAGAAGTGGTGACTGAAAAGGCTGAATTCCTGAGTAACTTAACAGTTTTTTTCA
AATTTNGGTTAAGCAATTGGAGTTTATGATCCTNACTGGTGATTGATATGAAGCAGAGCT
AACTATATTATAGATTTNGTCAAGCCAAATTTTTTGGGNACCCTTTTGTGGGGGGGGAAA
NAAAGCCGATTACGGGTA

consensusID : consensus_2886#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 282
fasta sequence

                              [CTCGCCGACCACCACCATTGACGAGAGAAAGGAGAAAGAAGTGGTGACTGAAAAGGNTGATTCCTGAGTAACTTAACAGTTTTTTTCAAATTTGGTTAGCAATTGAGTTTATGATCTTACTGTGATTGATATGAGCAGAGCTACTATATCATAGATTCGTCAAGCTAATTTTTGGGTCCCTTTGTGGGGGAAATAAAGCCGATTACGGAATAATTGTTGGACATGATAAGCAATTTACTGAGGAAATTTTGATGCTAAAAAAAAAAAAAAAAAAAAAAAANA]

[+] EMBL AU161341             [CTCGCCGACCACCACCATTGACGAGAGAAAGGAGAAAGAAGTGGTGACTGAAAAGGNTGATTCCTGAGTAACTTAACAGTTTTTTTCAAATTTGGTTAGCAATTGAGTTTATGATCTTACTGTGATTGATATGAGCAGAGCTACTATATCATAGATTCGTCAAGCTAATTTTTGGGTCCCTTTGTGGGGGAAATAAAGCCGATTACGGAATAATTGTTGGACATGATAAGCAATTTACTGAGGAAATTTTGATGCTAAAAAAAAAAAAAAAAAAAAAAAANA]




>consensus_2886#1
CTCGCCGACCACCACCATTGACGAGAGAAAGGAGAAAGAAGTGGTGACTGAAAAGGNTGA
TTCCTGAGTAACTTAACAGTTTTTTTCAAATTTGGTTAGCAATTGAGTTTATGATCTTAC
TGTGATTGATATGAGCAGAGCTACTATATCATAGATTCGTCAAGCTAATTTTTGGGTCCC
TTTGTGGGGGAAATAAAGCCGATTACGGAATAATTGTTGGACATGATAAGCAATTTACTG
AGGAAATTTTGATGCTAAAAAAAAAAAAAAAAAAAAAAAANA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_2886#0      AACCTCAAGAGGTGCATGGACGCGCACGNGACTACTACGCCCCCGTGCTCCGCGCCGAGC 60
consensus_2886#1      ------------------------------------------------------------
                                                                                  

consensus_2886#0      AGGCCGTCAACGACCACGCCGACGCCGCCATCGCCGCCGACAAGGCAAAGGAAGGCGGGG 120
consensus_2886#1      ------------------------------------------------------------
                                                                                  

consensus_2886#0      AGAAGAAGCTAGATGCGGTGGCCCAGGAGGCCGCGTCCGCCGCCGACGAGAAGAAACAAC 180
consensus_2886#1      ------------------------------------------------------------
                                                                                  

consensus_2886#0      AGGTTGAGGAGAAGTCGTCGTCGTCTTCTTCCTCGCCGACCACCACCATTGACGNGAGAA 240
consensus_2886#1      -------------------------------CTCGCCGACCACCACCATTGACGAGAGAA 29
                                                     *********************** *****

consensus_2886#0      AGGAGAAAGAAGTGGTGACTGAAAAGGCTGAATTCCTGAGTAACTTAACAGTTTTTTTCA 300
consensus_2886#1      AGGAGAAAGAAGTGGTGACTGAAAAGGNTGA-TTCCTGAGTAACTTAACAGTTTTTTTCA 88
                      *************************** *** ****************************

consensus_2886#0      AATTTNGGTTAAGCAATTGGAGTTTATGATCCTNACTGGTGATTGATATGAAGCAGAGCT 360
consensus_2886#1      AATTTGG--TTAGCAATTG-AGTTTATGATC-TTACTG-TGATTGATATGA-GCAGAGCT 142
                      ***** *  * ******** *********** * **** ************ ********

consensus_2886#0      AACTATATTATAGATTTNGTCAAGCCAAATTTTTTGGGNACCCTTTTGTGGGGGGGGAAA 420
consensus_2886#1      A-CTATATCATAGATT-CGTCAAGCTAA--TTTTTGGGT--CCCTTTGTGGGGG---AAA 193
                      * ****** *******  ******* **  ********   ** **********   ***

consensus_2886#0      NAAAGCCGATTACGGG-TA----------------------------------------- 438
consensus_2886#1      TAAAGCCGATTACGGAATAATTGTTGGACATGATAAGCAATTTACTGAGGAAATTTTGAT 253
                       **************  **                                         

consensus_2886#0      -----------------------------
consensus_2886#1      GCTAAAAAAAAAAAAAAAAAAAAAAAANA 282